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transcript:BL97059_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97059_cuf3
Unique Nametranscript:BL97059_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97059_cuf3

>transcript:BL97059_cuf3-protein ID=transcript:BL97059_cuf3-protein|Name=transcript:BL97059_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
EVTGSGKTQIARWVASQFLKHHPTAVVWVLDGQNSQTFLSSKRRLLAALN
AEVPEEEDSTKVDECLDKALKDRGTPVLLIVDDLEDAALLTPTLLRERIQ
SRVMILTHREDLQLPAETPFPCNLNGGFLTEEGVRFSQTVLEEADIPIDH
LRCLTDVFEGSPLGLAAAREYMRVTKTSPEQYMLMLKEEQTARILQQEAK
RGFWDSTTQSSTRDVSIQCSKLLRTM
Run BLAST on NCBI

mRNA from alignment at Sc0000022:1908316..1909693-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97059_cuf3 ID=transcript:BL97059_cuf3|Name=transcript:BL97059_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1378bp|location=Sequence derived from alignment at Sc0000022:1908316..1909693- (Branchiostoma lanceolatum)
GTGAAGTCACCGGATCAGGAAAGACACAGATTGCACGATGGGTAGCAAGC CAGTTCCTTAAGCACCACCCCACAGCTGTGGTGTGGGTGCTGGATGGACA GAACAGTCAGACTTTCCTGTCAAGCAAGAGGAGGCTCCTTGCAGCACTAA ATGCTGAGGTTCCAGAGGAAGAAGACTCCACCAAAGTGGACGAGTGCCTA GACAAGGCTCTAAAGGACCGGGGGACCCCAGTCCTGCTGATCGTGGATGA CCTTGAAGATGCTGCCCTCCTCACACCGACCTTGCTGAGAGAAAGGATCC AGTCCAGGGTGATGATCCTCACACATCGGGAGGATCTCCAACTTCCAGCT GAAACCCCGTTTCCATGCAACTTAAATGGAGGTTTTCTCACCGAGGAAGG TGTGAGATTCTCTCAAACGGTTCTGGAAGAAGCAGACATCCCAATTGATC ACCTACGGTGTCTAACAGATGTGTTTGAGGGCTCCCCGTTGGGACTTGCA GCAGCACGAGAATACATGCGGGTCACCAAAACCAGCCCAGAACAGTACAT GCTCATGCTGAAGGAAGAACAAACTGCTAGGATCCTCCAGCAAGAAGCTA AAAGGTTAGTTTGAATTATTCAGAACAGAAAATTGTGATTCTATCTCTTA TTATCAGTATTATCATACAAACTACTAGTATTCTTACTACTTAAGATTAC TGTAAATACAGGAATGTTTGCGGACTGGTTTTATGTTCGCAGTTTTCACA GTGAACTCTTTACCGCAAACTTAAAACCACTGCAAAAAGCCATTCCATTG TGTGACTGTAGCGCTACAGTACTGTTTTAAATGCAAACTCAGAACCACTG CAAACACTCCCTACCACGAAATTAGATCATTTCTGCATTTACACTGTACT TTGAGAAGCAAATATCAGATTATATGAGTATTGTGGGAATCACTTAAAGA TGGTTATCATCTGACTGTTTCAATTTCATTTAGTTGCATGTCAATTTGTA AAGTTGTATTAAAATTCAATTTGTCTTAATGTTGTTTAACAAAGTCCTAT TTTTGCTGTGTCTGCAGGTTTTTGGGACAGCACTACACAAAGTTCAACCA GGGATGTCTCCATCCAGTGTTCCAAGTTGCTCAGAACAATGTGAGACCAA TCAATGCAACTCCTAGTGTCCAAGATGAGAGTGGTGAAGAAATATCCCAC CCAGAAGATTCCTCATCTCTTCAGTCACCGGAAAGTCAGCTGACGGGGAA TGAGGTTCAAGAACAAGGAACCCAAGAACTCCACAACCCACATTGCATGC TGTCAGAAGAGGCTATCCCTACAGTGCTGTCACAAGAAGGAGCAGTAGCA AGTCACCCTCAAGATGAACAGCACACGG

Coding sequence (CDS) from alignment at Sc0000022:1908316..1909693-

>transcript:BL97059_cuf3 ID=transcript:BL97059_cuf3|Name=transcript:BL97059_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1362bp|location=Sequence derived from alignment at Sc0000022:1908316..1909693- (Branchiostoma lanceolatum)
GAAGTCACCGGATCAGGAAAGACACAGATTGCACGATGGGTAGCAAGCCA
GTTCCTTAAGCACCACCCCACAGCTGTGGTGTGGGTGCTGGATGGACAGA
ACAGTCAGACTTTCCTGTCAAGCAAGAGGAGGCTCCTTGCAGCACTAAAT
GCTGAGGTTCCAGAGGAAGAAGACTCCACCAAAGTGGACGAGTGCCTAGA
CAAGGCTCTAAAGGACCGGGGGACCCCAGTCCTGCTGATCGTGGATGACC
TTGAAGATGCTGCCCTCCTCACACCGACCTTGCTGAGAGAAAGGATCCAG
TCCAGGGTGATGATCCTCACACATCGGGAGGATCTCCAACTTCCAGCTGA
AACCCCGTTTCCATGCAACTTAAATGGAGGTTTTCTCACCGAGGAAGGTG
TGAGATTCTCTCAAACGGTTCTGGAAGAAGCAGACATCCCAATTGATCAC
CTACGGTGTCTAACAGATGTGTTTGAGGGCTCCCCGTTGGGACTTGCAGC
AGCACGAGAATACATGCGGGTCACCAAAACCAGCCCAGAACAGTACATGC
TCATGCTGAAGGAAGAACAAACTGCTAGGATCCTCCAGCAAGAAGCTAAA
AGAGGTTTTTGGGACAGCACTACACAAAGTTCAACCAGGGATGTCTCCAT
CCAGTGTTCCAAGTTGCTCAGAACAATGTGAGAAGTCACCGGATCAGGAA
AGACACAGATTGCACGATGGGTAGCAAGCCAGTTCCTTAAGCACCACCCC
ACAGCTGTGGTGTGGGTGCTGGATGGACAGAACAGTCAGACTTTCCTGTC
AAGCAAGAGGAGGCTCCTTGCAGCACTAAATGCTGAGGTTCCAGAGGAAG
AAGACTCCACCAAAGTGGACGAGTGCCTAGACAAGGCTCTAAAGGACCGG
GGGACCCCAGTCCTGCTGATCGTGGATGACCTTGAAGATGCTGCCCTCCT
CACACCGACCTTGCTGAGAGAAAGGATCCAGTCCAGGGTGATGATCCTCA
CACATCGGGAGGATCTCCAACTTCCAGCTGAAACCCCGTTTCCATGCAAC
TTAAATGGAGGTTTTCTCACCGAGGAAGGTGTGAGATTCTCTCAAACGGT
TCTGGAAGAAGCAGACATCCCAATTGATCACCTACGGTGTCTAACAGATG
TGTTTGAGGGCTCCCCGTTGGGACTTGCAGCAGCACGAGAATACATGCGG
GTCACCAAAACCAGCCCAGAACAGTACATGCTCATGCTGAAGGAAGAACA
AACTGCTAGGATCCTCCAGCAAGAAGCTAAAAGAGGTTTTTGGGACAGCA
CTACACAAAGTTCAACCAGGGATGTCTCCATCCAGTGTTCCAAGTTGCTC
AGAACAATGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97059gene:BL97059Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97059_cuf3-E1BL97059_cuf3-E1-1564476830-151524Branchiostoma lanceolatumexon
BL97059_cuf3-E2BL97059_cuf3-E2-1564476830-151521Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97059_cuf3transcript:BL97059_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000022genomeSc0000022:1908316..1909693 -
Properties
Property NameValue
Transcript idBL97059_cuf3
Biotypeprotein_coding