transcript:BL97054_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97054_cuf4
Unique Nametranscript:BL97054_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97054_cuf4

>transcript:BL97054_cuf4-protein ID=transcript:BL97054_cuf4-protein|Name=transcript:BL97054_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=337bp
GSESFVVTTTTVLLSIETEVDYEVAQEYTLILDVQDDGATPPRTGTVAIK
ILIEDVNDNCPILEETMFNIHPQPVLRTTPVMSLLWEDRDSGDNANTTFH
RTQINQTIIYDSRNDSTLLEFHIIVVDRGTPRRGDIATVAMTINDACLYD
SLDQSITHEITVDDDTGGVFVRVPKYYVKEFECGAPLGMQSALIFFTQIT
ASSAYEYYQPHYARLHNQPTNNDTTGVFAQGNWKAEIEDTNQWLQVSFLQ
ETIVTGVILQGSANDAAWVETYYLTYLSNGNDTWKTYVEGGVRRVFTGNT
DSSSTVQQDLADRITVTDIRIHPQTWHGSISMRMELI
Run BLAST on NCBI

mRNA from alignment at Sc0000022:2610379..2612966+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97054_cuf4 ID=transcript:BL97054_cuf4|Name=transcript:BL97054_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2588bp|location=Sequence derived from alignment at Sc0000022:2610379..2612966+ (Branchiostoma lanceolatum)
AGGTTCTGAATCTTTCGTCGTGACCACAACGACTGTACTGTTGAGCATTG AGACTGAAGTGGATTACGAAGTGGCCCAGGAATACACCCTAATACTAGAT GTACAGGACGACGGCGCCACACCACCAAGGACAGGAACAGTGGCAATCAA GGTATGTGACCCTTATCAAGAGATTGTGGCGCATTTGCCAATCAGGAAAG CGTTGGACAAGACAGAAGACCAAAGAAATGTCTGTCTTCTCAGAAAAAAA GAAAGTCGGTTAAACTGTTGTTACATCAGCCACCATATCAAGCTTGCCAT GAATAGTTTTATATGGTTGGTAAGTCGACGAAATATTTGAGACCGCATCT GTAAGCAGCGACACCTATAGCGACAGTCTCTCAGTCTCTCACATTAGAGT TTTCAAATATTTAGCTCACTGAAAACTGAAGATGAAAGATTTCTCGTCGT CTTTCAAACACATTGCTCTTTTCACTCCCACATAGATCCTTATCGAGGAC GTGAATGATAATTGTCCCATCCTAGAGGAGACGATGTTTAACATCCACCC TCAGCCTGTCTTAAGAACGACTCCAGTGATGTCTCTCCTGTGGGAGGATA GAGACAGTGGGGACAACGCCAACACGACATTCCACAGGACGCAGATCAAC CAAACGTAAGACCGCGCAATTTTCGTTGATTATGGTTTCAAGTTGTGCTA GCTTGGCAATGTATACATGTAGCTGTAAACTATCATTTTGCTGTGACCTG TATTTCACCCTGTGGGTATATATGTTCAATAAAGGTCTTCATTCATTAAT TTGTTCATTTTAGAATGCATAAAATTTGATTTGTTATCAACCCTAATTGC TCTCTATAACAAAAGGATAAAGGCCTTGCTACTTTTGACAAAGGACAACA GTATCTTGACCTCAACAAACTGGCTCAAAGGCACTTACAAAGACATAAAT ATCATTCTTACGGTTTCAGTCCTTTGCTCTCAAACTTGTTTTTATGTTTT TGGGAACTTTTTTCATGATAAACGTCGTCTACATATAAACAGTAGTGTCT GTTCTGCCTTTCACGAGATTCTGAAGACAAATTCCGAAGAAAAAAAAAAC TTTGTTTCTCAAGCTTTGTCACGTTGGAGAGCTCGAGCTTATTGGTGTTG TTTCTTTCTTTGCAGAATCATCTACGACAGCAGAAACGACAGCACCCTGT TAGAGTTCCACATCATCGTGGTCGACAGAGGGACACCACGACGTGGAGAC ATAGCAACCGTTGCCATGACGATAAACGACGCATGTCTCTATGACAGTTT GGACCAATCAATCACGCACGAGATAACTGTTGATGACGATACAGGAGGAG TGTTCGTTCGAGTACCGAAGTATTACGTCAAAGAATTTGGTGAGATGAAT TTTGTAACCTAAACAAATATGTTCCATTTTCTTAATTTAATTTGAATTCT ATTTTGATTGGTATCTTTTGTACAGTTTGGGTTACTATAGAATTCTTTTT TTTCTCGCAATTTGATATTTAGAATGTGGTGCACCACTGGGGATGCAGAG TGCACTGATCTTCTTCACACAAATCACGGCGTCTTCCGCGTATGAATACT ACCAGCCGCACTACGCACGACTGCACAACCAGCCCACCAATAACGACACC ACCGGCGTGTTCGCACAGGGAAACTGGAAGGCAGAAATTGAAGATACAAA CCAATGGCTACAGGTGGGGAAGATTTCGTTTTGTTTGCATTGCATACTCT GTAAACCGCCTCATGGCATATCACTCAAGTTTGCACTTTATTTTCAGATT TAACGTTATATCTATTTTCTAGCAGGTCACTTAATATCATCAGTTTTTAT TTTTGTACTGTAGGTATCATTCCTTCAAGAAACAATCGTCACCGGAGTGA TCTTACAGGGGAGTGCGAATGACGCAGCGTGGGTAGAGACGTACTACTTG ACATACCTGAGTAACGGAAACGACACATGGAAGACGTATGTGGAAGGAGG AGTACGACGGGTAAAGAACTAGGATTTACATGTTATCATTATATGCCAAT GACGCTCGGTGGTAGAACATCTAGTAGGTTAATGTAGTTGATGTTACAAA AGCTTTCGATGCTCAAATAGCTGATGTTTCAAAGGCTTTCGAGTTTCATA TTATAGTAGATTTTGCAAAGGCTTTCGATGCTAATATTGACCTATGTAAC TATTTTTTGTCATACGTCTTACGTTTGTTACTGTTGCCACTGCTATAAAA ATATAAAAAAACAATACACACTGTTCCATATAACAGCTATAATGAACAGT ACAACATATACACTTTTGCTTTAAAGCACATCTGAGATGAAATATATGAA ATAAATAGGGCTATTAGAAACTGTTAACACTGTTTAAAAATACTAGTTTT TTTTAATAATTAGATTTACCACCTAACGACTTATCCATTTTCAAAAATTT CTTTCAAGGTATTCACAGGAAATACAGATTCCTCTTCAACGGTGCAACAA GATCTTGCTGACCGTATCACAGTAACTGACATCCGGATCCATCCGCAAAC GTGGCACGGGAGCATCAGTATGAGGATGGAACTTATCG

Coding sequence (CDS) from alignment at Sc0000022:2610379..2612966+

>transcript:BL97054_cuf4 ID=transcript:BL97054_cuf4|Name=transcript:BL97054_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=6066bp|location=Sequence derived from alignment at Sc0000022:2610379..2612966+ (Branchiostoma lanceolatum)
GGTTCTGAATCTTTCGTCGTGACCACAACGACTGTACTGTTGAGCATTGA
GACTGAAGTGGATTACGAAGTGGCCCAGGAATACACCCTAATACTAGATG
TACAGGACGACGGCGCCACACCACCAAGGACAGGAACAGTGGCAATCAAG
ATCCTTATCGAGGACGTGAATGATAATTGTCCCATCCTAGAGGAGACGAT
GTTTAACATCCACCCTCAGCCTGTCTTAAGAACGACTCCAGTGATGTCTC
TCCTGTGGGAGGATAGAGACAGTGGGGACAACGCCAACACGACATTCCAC
AGGACGCAGATCAACCAAACAATCATCTACGACAGCAGAAACGACAGCAC
CCTGTTAGAGTTCCACATCATCGTGGTCGACAGAGGGACACCACGACGTG
GAGACATAGCAACCGTTGCCATGACGATAAACGACGCATGTCTCTATGAC
AGTTTGGACCAATCAATCACGCACGAGATAACTGTTGATGACGATACAGG
AGGAGTGTTCGTTCGAGTACCGAAGTATTACGTCAAAGAATTTGAATGTG
GTGCACCACTGGGGATGCAGAGTGCACTGATCTTCTTCACACAAATCACG
GCGTCTTCCGCGTATGAATACTACCAGCCGCACTACGCACGACTGCACAA
CCAGCCCACCAATAACGACACCACCGGCGTGTTCGCACAGGGAAACTGGA
AGGCAGAAATTGAAGATACAAACCAATGGCTACAGGTATCATTCCTTCAA
GAAACAATCGTCACCGGAGTGATCTTACAGGGGAGTGCGAATGACGCAGC
GTGGGTAGAGACGTACTACTTGACATACCTGAGTAACGGAAACGACACAT
GGAAGACGTATGTGGAAGGAGGAGTACGACGGGTATTCACAGGAAATACA
GATTCCTCTTCAACGGTGCAACAAGATCTTGCTGACCGTATCACAGTAAC
TGACATCCGGATCCATCCGCAAACGTGGCACGGGAGCATCAGTATGAGGA
TGGAACTTATCGGTTCTGAATCTTTCGTCGTGACCACAACGACTGTACTG
TTGAGCATTGAGACTGAAGTGGATTACGAAGTGGCCCAGGAATACACCCT
AATACTAGATGTACAGGACGACGGCGCCACACCACCAAGGACAGGAACAG
TGGCAATCAAGATCCTTATCGAGGACGTGAATGATAATTGTCCCATCCTA
GAGGAGACGATGTTTAACATCCACCCTCAGCCTGTCTTAAGAACGACTCC
AGTGATGTCTCTCCTGTGGGAGGATAGAGACAGTGGGGACAACGCCAACA
CGACATTCCACAGGACGCAGATCAACCAAACAATCATCTACGACAGCAGA
AACGACAGCACCCTGTTAGAGTTCCACATCATCGTGGTCGACAGAGGGAC
ACCACGACGTGGAGACATAGCAACCGTTGCCATGACGATAAACGACGCAT
GTCTCTATGACAGTTTGGACCAATCAATCACGCACGAGATAACTGTTGAT
GACGATACAGGAGGAGTGTTCGTTCGAGTACCGAAGTATTACGTCAAAGA
ATTTGAATGTGGTGCACCACTGGGGATGCAGAGTGCACTGATCTTCTTCA
CACAAATCACGGCGTCTTCCGCGTATGAATACTACCAGCCGCACTACGCA
CGACTGCACAACCAGCCCACCAATAACGACACCACCGGCGTGTTCGCACA
GGGAAACTGGAAGGCAGAAATTGAAGATACAAACCAATGGCTACAGGTAT
CATTCCTTCAAGAAACAATCGTCACCGGAGTGATCTTACAGGGGAGTGCG
AATGACGCAGCGTGGGTAGAGACGTACTACTTGACATACCTGAGTAACGG
AAACGACACATGGAAGACGTATGTGGAAGGAGGAGTACGACGGGTATTCA
CAGGAAATACAGATTCCTCTTCAACGGTGCAACAAGATCTTGCTGACCGT
ATCACAGTAACTGACATCCGGATCCATCCGCAAACGTGGCACGGGAGCAT
CAGTATGAGGATGGAACTTATCGGTTCTGAATCTTTCGTCGTGACCACAA
CGACTGTACTGTTGAGCATTGAGACTGAAGTGGATTACGAAGTGGCCCAG
GAATACACCCTAATACTAGATGTACAGGACGACGGCGCCACACCACCAAG
GACAGGAACAGTGGCAATCAAGATCCTTATCGAGGACGTGAATGATAATT
GTCCCATCCTAGAGGAGACGATGTTTAACATCCACCCTCAGCCTGTCTTA
AGAACGACTCCAGTGATGTCTCTCCTGTGGGAGGATAGAGACAGTGGGGA
CAACGCCAACACGACATTCCACAGGACGCAGATCAACCAAACAATCATCT
ACGACAGCAGAAACGACAGCACCCTGTTAGAGTTCCACATCATCGTGGTC
GACAGAGGGACACCACGACGTGGAGACATAGCAACCGTTGCCATGACGAT
AAACGACGCATGTCTCTATGACAGTTTGGACCAATCAATCACGCACGAGA
TAACTGTTGATGACGATACAGGAGGAGTGTTCGTTCGAGTACCGAAGTAT
TACGTCAAAGAATTTGAATGTGGTGCACCACTGGGGATGCAGAGTGCACT
GATCTTCTTCACACAAATCACGGCGTCTTCCGCGTATGAATACTACCAGC
CGCACTACGCACGACTGCACAACCAGCCCACCAATAACGACACCACCGGC
GTGTTCGCACAGGGAAACTGGAAGGCAGAAATTGAAGATACAAACCAATG
GCTACAGGTATCATTCCTTCAAGAAACAATCGTCACCGGAGTGATCTTAC
AGGGGAGTGCGAATGACGCAGCGTGGGTAGAGACGTACTACTTGACATAC
CTGAGTAACGGAAACGACACATGGAAGACGTATGTGGAAGGAGGAGTACG
ACGGGTATTCACAGGAAATACAGATTCCTCTTCAACGGTGCAACAAGATC
TTGCTGACCGTATCACAGTAACTGACATCCGGATCCATCCGCAAACGTGG
CACGGGAGCATCAGTATGAGGATGGAACTTATCGGTTCTGAATCTTTCGT
CGTGACCACAACGACTGTACTGTTGAGCATTGAGACTGAAGTGGATTACG
AAGTGGCCCAGGAATACACCCTAATACTAGATGTACAGGACGACGGCGCC
ACACCACCAAGGACAGGAACAGTGGCAATCAAGATCCTTATCGAGGACGT
GAATGATAATTGTCCCATCCTAGAGGAGACGATGTTTAACATCCACCCTC
AGCCTGTCTTAAGAACGACTCCAGTGATGTCTCTCCTGTGGGAGGATAGA
GACAGTGGGGACAACGCCAACACGACATTCCACAGGACGCAGATCAACCA
AACAATCATCTACGACAGCAGAAACGACAGCACCCTGTTAGAGTTCCACA
TCATCGTGGTCGACAGAGGGACACCACGACGTGGAGACATAGCAACCGTT
GCCATGACGATAAACGACGCATGTCTCTATGACAGTTTGGACCAATCAAT
CACGCACGAGATAACTGTTGATGACGATACAGGAGGAGTGTTCGTTCGAG
TACCGAAGTATTACGTCAAAGAATTTGAATGTGGTGCACCACTGGGGATG
CAGAGTGCACTGATCTTCTTCACACAAATCACGGCGTCTTCCGCGTATGA
ATACTACCAGCCGCACTACGCACGACTGCACAACCAGCCCACCAATAACG
ACACCACCGGCGTGTTCGCACAGGGAAACTGGAAGGCAGAAATTGAAGAT
ACAAACCAATGGCTACAGGTATCATTCCTTCAAGAAACAATCGTCACCGG
AGTGATCTTACAGGGGAGTGCGAATGACGCAGCGTGGGTAGAGACGTACT
ACTTGACATACCTGAGTAACGGAAACGACACATGGAAGACGTATGTGGAA
GGAGGAGTACGACGGGTATTCACAGGAAATACAGATTCCTCTTCAACGGT
GCAACAAGATCTTGCTGACCGTATCACAGTAACTGACATCCGGATCCATC
CGCAAACGTGGCACGGGAGCATCAGTATGAGGATGGAACTTATCGGTTCT
GAATCTTTCGTCGTGACCACAACGACTGTACTGTTGAGCATTGAGACTGA
AGTGGATTACGAAGTGGCCCAGGAATACACCCTAATACTAGATGTACAGG
ACGACGGCGCCACACCACCAAGGACAGGAACAGTGGCAATCAAGATCCTT
ATCGAGGACGTGAATGATAATTGTCCCATCCTAGAGGAGACGATGTTTAA
CATCCACCCTCAGCCTGTCTTAAGAACGACTCCAGTGATGTCTCTCCTGT
GGGAGGATAGAGACAGTGGGGACAACGCCAACACGACATTCCACAGGACG
CAGATCAACCAAACAATCATCTACGACAGCAGAAACGACAGCACCCTGTT
AGAGTTCCACATCATCGTGGTCGACAGAGGGACACCACGACGTGGAGACA
TAGCAACCGTTGCCATGACGATAAACGACGCATGTCTCTATGACAGTTTG
GACCAATCAATCACGCACGAGATAACTGTTGATGACGATACAGGAGGAGT
GTTCGTTCGAGTACCGAAGTATTACGTCAAAGAATTTGAATGTGGTGCAC
CACTGGGGATGCAGAGTGCACTGATCTTCTTCACACAAATCACGGCGTCT
TCCGCGTATGAATACTACCAGCCGCACTACGCACGACTGCACAACCAGCC
CACCAATAACGACACCACCGGCGTGTTCGCACAGGGAAACTGGAAGGCAG
AAATTGAAGATACAAACCAATGGCTACAGGTATCATTCCTTCAAGAAACA
ATCGTCACCGGAGTGATCTTACAGGGGAGTGCGAATGACGCAGCGTGGGT
AGAGACGTACTACTTGACATACCTGAGTAACGGAAACGACACATGGAAGA
CGTATGTGGAAGGAGGAGTACGACGGGTATTCACAGGAAATACAGATTCC
TCTTCAACGGTGCAACAAGATCTTGCTGACCGTATCACAGTAACTGACAT
CCGGATCCATCCGCAAACGTGGCACGGGAGCATCAGTATGAGGATGGAAC
TTATCGGTTCTGAATCTTTCGTCGTGACCACAACGACTGTACTGTTGAGC
ATTGAGACTGAAGTGGATTACGAAGTGGCCCAGGAATACACCCTAATACT
AGATGTACAGGACGACGGCGCCACACCACCAAGGACAGGAACAGTGGCAA
TCAAGATCCTTATCGAGGACGTGAATGATAATTGTCCCATCCTAGAGGAG
ACGATGTTTAACATCCACCCTCAGCCTGTCTTAAGAACGACTCCAGTGAT
GTCTCTCCTGTGGGAGGATAGAGACAGTGGGGACAACGCCAACACGACAT
TCCACAGGACGCAGATCAACCAAACAATCATCTACGACAGCAGAAACGAC
AGCACCCTGTTAGAGTTCCACATCATCGTGGTCGACAGAGGGACACCACG
ACGTGGAGACATAGCAACCGTTGCCATGACGATAAACGACGCATGTCTCT
ATGACAGTTTGGACCAATCAATCACGCACGAGATAACTGTTGATGACGAT
ACAGGAGGAGTGTTCGTTCGAGTACCGAAGTATTACGTCAAAGAATTTGA
ATGTGGTGCACCACTGGGGATGCAGAGTGCACTGATCTTCTTCACACAAA
TCACGGCGTCTTCCGCGTATGAATACTACCAGCCGCACTACGCACGACTG
CACAACCAGCCCACCAATAACGACACCACCGGCGTGTTCGCACAGGGAAA
CTGGAAGGCAGAAATTGAAGATACAAACCAATGGCTACAGGTATCATTCC
TTCAAGAAACAATCGTCACCGGAGTGATCTTACAGGGGAGTGCGAATGAC
GCAGCGTGGGTAGAGACGTACTACTTGACATACCTGAGTAACGGAAACGA
CACATGGAAGACGTATGTGGAAGGAGGAGTACGACGGGTATTCACAGGAA
ATACAGATTCCTCTTCAACGGTGCAACAAGATCTTGCTGACCGTATCACA
GTAACTGACATCCGGATCCATCCGCAAACGTGGCACGGGAGCATCAGTAT
GAGGATGGAACTTATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97054gene:BL97054Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97054_cuf4transcript:BL97054_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97054_cuf4-E1BL97054_cuf4-E1-1564476830-152643Branchiostoma lanceolatumexon
BL97054_cuf4-E2BL97054_cuf4-E2-1564476830-152645Branchiostoma lanceolatumexon
BL97054_cuf4-E3BL97054_cuf4-E3-1564476830-152647Branchiostoma lanceolatumexon
BL97054_cuf4-E4BL97054_cuf4-E4-1564476830-152649Branchiostoma lanceolatumexon
BL97054_cuf4-E5BL97054_cuf4-E5-1564476830-152651Branchiostoma lanceolatumexon
BL97054_cuf4-E6BL97054_cuf4-E6-1564476830-152654Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000022genomeSc0000022:2610379..2612966 +
Properties
Property NameValue
Transcript idBL97054_cuf4
Biotypeprotein_coding