transcript:BL97046_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97046_cuf1
Unique Nametranscript:BL97046_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97046_cuf1

>transcript:BL97046_cuf1-protein ID=transcript:BL97046_cuf1-protein|Name=transcript:BL97046_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=353bp
VIPTSCNGSQGSPDTFSTLEAKVHFKRRLPYYILRVYTPTATVVAVSWMS
FWVHYSETSARVALGCTTFLMLVRLGSQVEKMPHISYIRAIDLWYVFCLA
FAFMVILEYAVVHHLHNPQHKKAKQKEKKGTKTHPSPRKPQEEDSAEVAP
RPGRRFAQAVNQVRARQASAGRSRVSPDLSANSRSDKPVTAKPSGWELII
PPSRLHTSKPSQGQGNARREGGDGSTLLQGAEANTTYHVMAGQTTRKRRR
HRGTQGGQEETVRRSFVATTSPAQQTQHQVKESTQGASTSPDSGPAGSRK
EEEPAAVNGQKKAERNQEITYKKPCNIDEWSRVIFPVGFLLFSIIYWAYY
LYA
Run BLAST on NCBI

mRNA from alignment at Sc0000384:19076..22700+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97046_cuf1 ID=transcript:BL97046_cuf1|Name=transcript:BL97046_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3625bp|location=Sequence derived from alignment at Sc0000384:19076..22700+ (Branchiostoma lanceolatum)
AGGTCATCCCGACAAGCTGTAACGGGTCTCAAGGTACGTGTAACGTTACA TTCTTTTACTACATTCAAGAGACACGGTCATTCGAAGATTCATCTGCAGT TTTTGTGTTCTATTTTCCTTAATCAATGTTTTACAGGTACGTATCCATGT AGGAATCCTGGATAAGAGCAGCATTGTATTTTGCATCGCAGTGTAGGAAA AGACAACTGTTTTTTTTTTATGTTTGACCTTCCAGCAGGCTCCCCGGACA CCTTCTCGACTCTGGAAGCAAAAGTCCACTTCAAGCGCCGCCTGCCGTAC TACATTCTCCGAGTCTACACTCCTACAGCTACGGTCGTGGCCGTGTCATG GATGTCCTTTTGGGTGCACTACTCGGAGACATCCGCTAGGGTCGCCCTGG GATGCACAACCTTCCTCATGCTTGTTCGCCTCGGCAGTCAAGTCGAGAAA ATGCCGCATGTAAGCTGAATAGTGAGAATCCAATAGATTTATTAAGTACA CGTCATTTTTTCTTTGTTCATTTAGATTACATATTTCCAGAGTGGAGTTC ACTTAACCAATTTACGGTTTATTTATTTGTTTGTTTGTTTGTTTATATTT TAGTTATCATTTACCTTCTGTTTTACCCAGATTTCCTACATACGAGCTAT TGACCTCTGGTACGTGTTCTGCCTGGCCTTCGCGTTTATGGTGATCCTTG AGTACGCCGTGGTACACCACCTGCACAACCCACAACACAAAAAGGTGAGA TGTCTGCCATTATCCTCTTTAAACCCTTGTTGTATTTCTGCACCACTTGT TATGGGTATTATGAAATTGTGCTGCTCATATGATGAAATATATTTGGCCT TGTGTGATTTCTAAAAACTTATGATATACGTCTTGTTTATCAATAATATG AAGGCAAAACAAAAGGAAAAGAAGGGAACAAAGACGCATCCCAGCCCCCG GAAGCCTCAGGAGGAGGACTCGGCTGAGGTTGCACCGCGGCCGGGCAGAC GCTTCGCCCAGGCGGTAAACCAGGTACGGGCACGGCAGGCCAGCGCCGGT AGAAGCAGGGTGTCTCCGGATCTCTCAGCCAACTCCAGGTCAGACAAACC TGTAACCGCGAAGCCCTCTGGATGGGAACTGATCATCCCACCTTCACGCC TGCACACCTCCAAACCGTCCCAGGGCCAGGGCAACGCACGCCGTGAGGGC GGTGACGGAAGCACGCTGCTGCAGGGGGCCGAGGCAAACACGACGTACCA TGTGATGGCTGGTCAAACCACCAGAAAGCGGAGGAGACACCGCGGAACGC AGGGAGGACAAGAGGAGACGGTGAGGAGGAGTTTCGTCGCCACCACGTCT CCTGCCCAGCAGACTCAGCACCAGGTCAAGGAATCAACTCAGGGAGCCTC TACCTCACCAGACAGCGGTCCGGCGGGGTCAAGGAAGGAGGAAGAGCCAG CTGCAGTCAACGGACAGAAGAAGGCAGAGCGGAACCAGGAGATCACCTAC AAGAAACCGTGCAACATTGATGAGTGGTCTAGGGTGATCTTTCCCGTAGG GTTTCTGCTGTTCTCCATCATATACTGGGCGTATTATCTGTATGCCTAAC TCTATATATCTACCTCTTTCAAAAAATGTCCCTTGATGCCATACANAGAA AAATCTGACAAAACGAGGTGATTTTCTTTGGAACGAGGTGATTTTCTCCA AGATCAAGTAAGCAAGTCTTGCCTTGATACCTCAATGGACAGCAGACTTT ATCAACAGACAAGATAAGATTTTCAATAAGATATACAGTTGAATATAGAT ATTTCTCGAGTCCTTTCAACAGCAGAAGTTGAAACTTACAATTAGCTTTA TACACGGTATTGCCATTTTGGTATTGTGAAGACTGTATCAACATTTTCAT CATTTTAGGTACTCCTCGGCAAGCATGTATCAGCTAGGAATACAAAACTC AGGTATTACGTACGTTATAGACAATGCCACGTACTGTAGCAGCTCCATAG TATGTATAATGTATACGTAATACCAACACTTGTGGTATTGTAGCTGTTTT AAGACAGACTTACATGTATATTGTTAAGTGAGTTGTATATCTCTTGTGCA TGTTCATGAAAATTGTGCTCCTCAAATTTTATGGCACCTTATTTCCTTTT CGCACAAAAATTAATGCACAAAGGTAAACTTGATTTTCAGCTCATCACAG AGCATATTGGTATAAAGTAAGAAGAACATTACATTTGAAAAGATTTTTGG ACTTTATTTTCAATGCTATGTATTTTGTGCGTTACATCTATCTGTCAACT GTGATAAGGTCGCAAGCTTGTTTTATGTGAGTTATATGCGTGCCAATATA CATGTAGAAATGAAGCACCCCGCGCAGATAGATGTTTGGCCTCAGATGTT TTCCATCAAATTAAAACTGTTGTGTCACATCATCCAACCTATCTGTACAT TGTATGTTGTTAAAAGGGAAACAAGGAACTGACATTGTTTTATAGGTGAC ATCCGCTGGCACATCGGTTTTCGCCAGTTTTCAAAAAAAAAAAAACATCT ATTCACGTATACGTCATATTTTGTACAAAATGAGTAAGTTTGGGATGTAA CGTTATATGGACACCATGCGTTTCGAATTTCCTTAGCAACTTTAGCTTTC TACTCAACGGTTGTCTGCTTATATAATAAGAGATTGCCATAGAAGAACTC AACCAACAACATAACCATCTTTCACCCCATATCTGCTTGAAGACCTTATT CAATTTCCTATGGCAACTTTTGCCTTTTACTTGACTCATACGCTTCTGTA CATTTGAACACCAGACCACAAAATGATATAACAAGGTCATACCTACAGCA TTCCTTTACAACCCCTCCAACTTCAATTAGATTTAAGAAACTAGACATCT TTGGTCATCCACAAAATCGAATCAGTAAGGTCTAATCCAGTCTTCTCCAT GCACCCTAGTTCATCTATAGACCTCTACGAAATCTCAATGGTTGAATCAT AGCTATTATAGTCGGATAAGCAAATCCACGTATCAAACCTTATACCACTG CCAAAATAGATACACGCATGCCCGATACACCAACTGTAACAGCTCTTTCA TGTCGCTGATACATGAATACGTAAGTAATGTCCAGTTCATTCGTTATAAA GAGATTAACATTTCCTACACCAGCATTTCACCCTTGTGATCACCCCTTTT GTATGGCTACTAGTACTATACTTGCTTCATCGTTCCGATCATTTATTGTT ATACTCGAACATCTTGTACATGCGTGTCAAGGACAATCCATCTAATTTTT ACTCCGCATATAATGTATACTTCGTGGTCATAAGAGCAGGCCGTCACAGT GGCTTGGTACCCCCACCCCTACCCTGAGAATAATGGAGGCTAAGATATAG CAACAACGTTTGCAGGCACAGGCATCAAAGAGCTCCAGCCATCACTGCTC AGATCTGACTTGTCGGTGACGGGGACGTACCCGAACAGCTTCATGACTTT CTGACAGGCGGGGTCGCTCTGGATGAGTCTGATGGCGTCCCAGTCGAGCA GGGTTTTCCACGGGTCGTTGCTCTGCAGACCAGACTGGGTGTGCGCGTTC AACCAGTTCAACATCTGTGCACGGA

Coding sequence (CDS) from alignment at Sc0000384:19076..22700+

>transcript:BL97046_cuf1 ID=transcript:BL97046_cuf1|Name=transcript:BL97046_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4248bp|location=Sequence derived from alignment at Sc0000384:19076..22700+ (Branchiostoma lanceolatum)
GTCATCCCGACAAGCTGTAACGGGTCTCAAGGCTCCCCGGACACCTTCTC
GACTCTGGAAGCAAAAGTCCACTTCAAGCGCCGCCTGCCGTACTACATTC
TCCGAGTCTACACTCCTACAGCTACGGTCGTGGCCGTGTCATGGATGTCC
TTTTGGGTGCACTACTCGGAGACATCCGCTAGGGTCGCCCTGGGATGCAC
AACCTTCCTCATGCTTGTTCGCCTCGGCAGTCAAGTCGAGAAAATGCCGC
ATATTTCCTACATACGAGCTATTGACCTCTGGTACGTGTTCTGCCTGGCC
TTCGCGTTTATGGTGATCCTTGAGTACGCCGTGGTACACCACCTGCACAA
CCCACAACACAAAAAGGCAAAACAAAAGGAAAAGAAGGGAACAAAGACGC
ATCCCAGCCCCCGGAAGCCTCAGGAGGAGGACTCGGCTGAGGTTGCACCG
CGGCCGGGCAGACGCTTCGCCCAGGCGGTAAACCAGGTACGGGCACGGCA
GGCCAGCGCCGGTAGAAGCAGGGTGTCTCCGGATCTCTCAGCCAACTCCA
GGTCAGACAAACCTGTAACCGCGAAGCCCTCTGGATGGGAACTGATCATC
CCACCTTCACGCCTGCACACCTCCAAACCGTCCCAGGGCCAGGGCAACGC
ACGCCGTGAGGGCGGTGACGGAAGCACGCTGCTGCAGGGGGCCGAGGCAA
ACACGACGTACCATGTGATGGCTGGTCAAACCACCAGAAAGCGGAGGAGA
CACCGCGGAACGCAGGGAGGACAAGAGGAGACGGTGAGGAGGAGTTTCGT
CGCCACCACGTCTCCTGCCCAGCAGACTCAGCACCAGGTCAAGGAATCAA
CTCAGGGAGCCTCTACCTCACCAGACAGCGGTCCGGCGGGGTCAAGGAAG
GAGGAAGAGCCAGCTGCAGTCAACGGACAGAAGAAGGCAGAGCGGAACCA
GGAGATCACCTACAAGAAACCGTGCAACATTGATGAGTGGTCTAGGGTGA
TCTTTCCCGTAGGGTTTCTGCTGTTCTCCATCATATACTGGGCGTATTAT
CTGTATGCCTAAGTCATCCCGACAAGCTGTAACGGGTCTCAAGGCTCCCC
GGACACCTTCTCGACTCTGGAAGCAAAAGTCCACTTCAAGCGCCGCCTGC
CGTACTACATTCTCCGAGTCTACACTCCTACAGCTACGGTCGTGGCCGTG
TCATGGATGTCCTTTTGGGTGCACTACTCGGAGACATCCGCTAGGGTCGC
CCTGGGATGCACAACCTTCCTCATGCTTGTTCGCCTCGGCAGTCAAGTCG
AGAAAATGCCGCATATTTCCTACATACGAGCTATTGACCTCTGGTACGTG
TTCTGCCTGGCCTTCGCGTTTATGGTGATCCTTGAGTACGCCGTGGTACA
CCACCTGCACAACCCACAACACAAAAAGGCAAAACAAAAGGAAAAGAAGG
GAACAAAGACGCATCCCAGCCCCCGGAAGCCTCAGGAGGAGGACTCGGCT
GAGGTTGCACCGCGGCCGGGCAGACGCTTCGCCCAGGCGGTAAACCAGGT
ACGGGCACGGCAGGCCAGCGCCGGTAGAAGCAGGGTGTCTCCGGATCTCT
CAGCCAACTCCAGGTCAGACAAACCTGTAACCGCGAAGCCCTCTGGATGG
GAACTGATCATCCCACCTTCACGCCTGCACACCTCCAAACCGTCCCAGGG
CCAGGGCAACGCACGCCGTGAGGGCGGTGACGGAAGCACGCTGCTGCAGG
GGGCCGAGGCAAACACGACGTACCATGTGATGGCTGGTCAAACCACCAGA
AAGCGGAGGAGACACCGCGGAACGCAGGGAGGACAAGAGGAGACGGTGAG
GAGGAGTTTCGTCGCCACCACGTCTCCTGCCCAGCAGACTCAGCACCAGG
TCAAGGAATCAACTCAGGGAGCCTCTACCTCACCAGACAGCGGTCCGGCG
GGGTCAAGGAAGGAGGAAGAGCCAGCTGCAGTCAACGGACAGAAGAAGGC
AGAGCGGAACCAGGAGATCACCTACAAGAAACCGTGCAACATTGATGAGT
GGTCTAGGGTGATCTTTCCCGTAGGGTTTCTGCTGTTCTCCATCATATAC
TGGGCGTATTATCTGTATGCCTAAGTCATCCCGACAAGCTGTAACGGGTC
TCAAGGCTCCCCGGACACCTTCTCGACTCTGGAAGCAAAAGTCCACTTCA
AGCGCCGCCTGCCGTACTACATTCTCCGAGTCTACACTCCTACAGCTACG
GTCGTGGCCGTGTCATGGATGTCCTTTTGGGTGCACTACTCGGAGACATC
CGCTAGGGTCGCCCTGGGATGCACAACCTTCCTCATGCTTGTTCGCCTCG
GCAGTCAAGTCGAGAAAATGCCGCATATTTCCTACATACGAGCTATTGAC
CTCTGGTACGTGTTCTGCCTGGCCTTCGCGTTTATGGTGATCCTTGAGTA
CGCCGTGGTACACCACCTGCACAACCCACAACACAAAAAGGCAAAACAAA
AGGAAAAGAAGGGAACAAAGACGCATCCCAGCCCCCGGAAGCCTCAGGAG
GAGGACTCGGCTGAGGTTGCACCGCGGCCGGGCAGACGCTTCGCCCAGGC
GGTAAACCAGGTACGGGCACGGCAGGCCAGCGCCGGTAGAAGCAGGGTGT
CTCCGGATCTCTCAGCCAACTCCAGGTCAGACAAACCTGTAACCGCGAAG
CCCTCTGGATGGGAACTGATCATCCCACCTTCACGCCTGCACACCTCCAA
ACCGTCCCAGGGCCAGGGCAACGCACGCCGTGAGGGCGGTGACGGAAGCA
CGCTGCTGCAGGGGGCCGAGGCAAACACGACGTACCATGTGATGGCTGGT
CAAACCACCAGAAAGCGGAGGAGACACCGCGGAACGCAGGGAGGACAAGA
GGAGACGGTGAGGAGGAGTTTCGTCGCCACCACGTCTCCTGCCCAGCAGA
CTCAGCACCAGGTCAAGGAATCAACTCAGGGAGCCTCTACCTCACCAGAC
AGCGGTCCGGCGGGGTCAAGGAAGGAGGAAGAGCCAGCTGCAGTCAACGG
ACAGAAGAAGGCAGAGCGGAACCAGGAGATCACCTACAAGAAACCGTGCA
ACATTGATGAGTGGTCTAGGGTGATCTTTCCCGTAGGGTTTCTGCTGTTC
TCCATCATATACTGGGCGTATTATCTGTATGCCTAAGTCATCCCGACAAG
CTGTAACGGGTCTCAAGGCTCCCCGGACACCTTCTCGACTCTGGAAGCAA
AAGTCCACTTCAAGCGCCGCCTGCCGTACTACATTCTCCGAGTCTACACT
CCTACAGCTACGGTCGTGGCCGTGTCATGGATGTCCTTTTGGGTGCACTA
CTCGGAGACATCCGCTAGGGTCGCCCTGGGATGCACAACCTTCCTCATGC
TTGTTCGCCTCGGCAGTCAAGTCGAGAAAATGCCGCATATTTCCTACATA
CGAGCTATTGACCTCTGGTACGTGTTCTGCCTGGCCTTCGCGTTTATGGT
GATCCTTGAGTACGCCGTGGTACACCACCTGCACAACCCACAACACAAAA
AGGCAAAACAAAAGGAAAAGAAGGGAACAAAGACGCATCCCAGCCCCCGG
AAGCCTCAGGAGGAGGACTCGGCTGAGGTTGCACCGCGGCCGGGCAGACG
CTTCGCCCAGGCGGTAAACCAGGTACGGGCACGGCAGGCCAGCGCCGGTA
GAAGCAGGGTGTCTCCGGATCTCTCAGCCAACTCCAGGTCAGACAAACCT
GTAACCGCGAAGCCCTCTGGATGGGAACTGATCATCCCACCTTCACGCCT
GCACACCTCCAAACCGTCCCAGGGCCAGGGCAACGCACGCCGTGAGGGCG
GTGACGGAAGCACGCTGCTGCAGGGGGCCGAGGCAAACACGACGTACCAT
GTGATGGCTGGTCAAACCACCAGAAAGCGGAGGAGACACCGCGGAACGCA
GGGAGGACAAGAGGAGACGGTGAGGAGGAGTTTCGTCGCCACCACGTCTC
CTGCCCAGCAGACTCAGCACCAGGTCAAGGAATCAACTCAGGGAGCCTCT
ACCTCACCAGACAGCGGTCCGGCGGGGTCAAGGAAGGAGGAAGAGCCAGC
TGCAGTCAACGGACAGAAGAAGGCAGAGCGGAACCAGGAGATCACCTACA
AGAAACCGTGCAACATTGATGAGTGGTCTAGGGTGATCTTTCCCGTAGGG
TTTCTGCTGTTCTCCATCATATACTGGGCGTATTATCTGTATGCCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97046gene:BL97046Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97046_cuf1transcript:BL97046_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97046_cuf1-E1BL97046_cuf1-E1-1564476830-453720Branchiostoma lanceolatumexon
BL97046_cuf1-E2BL97046_cuf1-E2-1564476830-453722Branchiostoma lanceolatumexon
BL97046_cuf1-E3BL97046_cuf1-E3-1564476830-453724Branchiostoma lanceolatumexon
BL97046_cuf1-E4BL97046_cuf1-E4-1564476830-453727Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000384genomeSc0000384:19076..22700 +
Properties
Property NameValue
Transcript idBL97046_cuf1
Biotypeprotein_coding