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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97046_cuf1 >transcript:BL97046_cuf1-protein ID=transcript:BL97046_cuf1-protein|Name=transcript:BL97046_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=353bp
VIPTSCNGSQGSPDTFSTLEAKVHFKRRLPYYILRVYTPTATVVAVSWMS
FWVHYSETSARVALGCTTFLMLVRLGSQVEKMPHISYIRAIDLWYVFCLA
FAFMVILEYAVVHHLHNPQHKKAKQKEKKGTKTHPSPRKPQEEDSAEVAP
RPGRRFAQAVNQVRARQASAGRSRVSPDLSANSRSDKPVTAKPSGWELII
PPSRLHTSKPSQGQGNARREGGDGSTLLQGAEANTTYHVMAGQTTRKRRR
HRGTQGGQEETVRRSFVATTSPAQQTQHQVKESTQGASTSPDSGPAGSRK
EEEPAAVNGQKKAERNQEITYKKPCNIDEWSRVIFPVGFLLFSIIYWAYY
LYA Run BLAST on NCBI mRNA from alignment at Sc0000384:19076..22700+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97046_cuf1 ID=transcript:BL97046_cuf1|Name=transcript:BL97046_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3625bp|location=Sequence derived from alignment at Sc0000384:19076..22700+ (Branchiostoma lanceolatum)
AGGTCATCCCGACAAGCTGTAACGGGTCTCAAGGTACGTGTAACGTTACA
TTCTTTTACTACATTCAAGAGACACGGTCATTCGAAGATTCATCTGCAGT
TTTTGTGTTCTATTTTCCTTAATCAATGTTTTACAGGTACGTATCCATGT
AGGAATCCTGGATAAGAGCAGCATTGTATTTTGCATCGCAGTGTAGGAAA
AGACAACTGTTTTTTTTTTATGTTTGACCTTCCAGCAGGCTCCCCGGACA
CCTTCTCGACTCTGGAAGCAAAAGTCCACTTCAAGCGCCGCCTGCCGTAC
TACATTCTCCGAGTCTACACTCCTACAGCTACGGTCGTGGCCGTGTCATG
GATGTCCTTTTGGGTGCACTACTCGGAGACATCCGCTAGGGTCGCCCTGG
GATGCACAACCTTCCTCATGCTTGTTCGCCTCGGCAGTCAAGTCGAGAAA
ATGCCGCATGTAAGCTGAATAGTGAGAATCCAATAGATTTATTAAGTACA
CGTCATTTTTTCTTTGTTCATTTAGATTACATATTTCCAGAGTGGAGTTC
ACTTAACCAATTTACGGTTTATTTATTTGTTTGTTTGTTTGTTTATATTT
TAGTTATCATTTACCTTCTGTTTTACCCAGATTTCCTACATACGAGCTAT
TGACCTCTGGTACGTGTTCTGCCTGGCCTTCGCGTTTATGGTGATCCTTG
AGTACGCCGTGGTACACCACCTGCACAACCCACAACACAAAAAGGTGAGA
TGTCTGCCATTATCCTCTTTAAACCCTTGTTGTATTTCTGCACCACTTGT
TATGGGTATTATGAAATTGTGCTGCTCATATGATGAAATATATTTGGCCT
TGTGTGATTTCTAAAAACTTATGATATACGTCTTGTTTATCAATAATATG
AAGGCAAAACAAAAGGAAAAGAAGGGAACAAAGACGCATCCCAGCCCCCG
GAAGCCTCAGGAGGAGGACTCGGCTGAGGTTGCACCGCGGCCGGGCAGAC
GCTTCGCCCAGGCGGTAAACCAGGTACGGGCACGGCAGGCCAGCGCCGGT
AGAAGCAGGGTGTCTCCGGATCTCTCAGCCAACTCCAGGTCAGACAAACC
TGTAACCGCGAAGCCCTCTGGATGGGAACTGATCATCCCACCTTCACGCC
TGCACACCTCCAAACCGTCCCAGGGCCAGGGCAACGCACGCCGTGAGGGC
GGTGACGGAAGCACGCTGCTGCAGGGGGCCGAGGCAAACACGACGTACCA
TGTGATGGCTGGTCAAACCACCAGAAAGCGGAGGAGACACCGCGGAACGC
AGGGAGGACAAGAGGAGACGGTGAGGAGGAGTTTCGTCGCCACCACGTCT
CCTGCCCAGCAGACTCAGCACCAGGTCAAGGAATCAACTCAGGGAGCCTC
TACCTCACCAGACAGCGGTCCGGCGGGGTCAAGGAAGGAGGAAGAGCCAG
CTGCAGTCAACGGACAGAAGAAGGCAGAGCGGAACCAGGAGATCACCTAC
AAGAAACCGTGCAACATTGATGAGTGGTCTAGGGTGATCTTTCCCGTAGG
GTTTCTGCTGTTCTCCATCATATACTGGGCGTATTATCTGTATGCCTAAC
TCTATATATCTACCTCTTTCAAAAAATGTCCCTTGATGCCATACANAGAA
AAATCTGACAAAACGAGGTGATTTTCTTTGGAACGAGGTGATTTTCTCCA
AGATCAAGTAAGCAAGTCTTGCCTTGATACCTCAATGGACAGCAGACTTT
ATCAACAGACAAGATAAGATTTTCAATAAGATATACAGTTGAATATAGAT
ATTTCTCGAGTCCTTTCAACAGCAGAAGTTGAAACTTACAATTAGCTTTA
TACACGGTATTGCCATTTTGGTATTGTGAAGACTGTATCAACATTTTCAT
CATTTTAGGTACTCCTCGGCAAGCATGTATCAGCTAGGAATACAAAACTC
AGGTATTACGTACGTTATAGACAATGCCACGTACTGTAGCAGCTCCATAG
TATGTATAATGTATACGTAATACCAACACTTGTGGTATTGTAGCTGTTTT
AAGACAGACTTACATGTATATTGTTAAGTGAGTTGTATATCTCTTGTGCA
TGTTCATGAAAATTGTGCTCCTCAAATTTTATGGCACCTTATTTCCTTTT
CGCACAAAAATTAATGCACAAAGGTAAACTTGATTTTCAGCTCATCACAG
AGCATATTGGTATAAAGTAAGAAGAACATTACATTTGAAAAGATTTTTGG
ACTTTATTTTCAATGCTATGTATTTTGTGCGTTACATCTATCTGTCAACT
GTGATAAGGTCGCAAGCTTGTTTTATGTGAGTTATATGCGTGCCAATATA
CATGTAGAAATGAAGCACCCCGCGCAGATAGATGTTTGGCCTCAGATGTT
TTCCATCAAATTAAAACTGTTGTGTCACATCATCCAACCTATCTGTACAT
TGTATGTTGTTAAAAGGGAAACAAGGAACTGACATTGTTTTATAGGTGAC
ATCCGCTGGCACATCGGTTTTCGCCAGTTTTCAAAAAAAAAAAAACATCT
ATTCACGTATACGTCATATTTTGTACAAAATGAGTAAGTTTGGGATGTAA
CGTTATATGGACACCATGCGTTTCGAATTTCCTTAGCAACTTTAGCTTTC
TACTCAACGGTTGTCTGCTTATATAATAAGAGATTGCCATAGAAGAACTC
AACCAACAACATAACCATCTTTCACCCCATATCTGCTTGAAGACCTTATT
CAATTTCCTATGGCAACTTTTGCCTTTTACTTGACTCATACGCTTCTGTA
CATTTGAACACCAGACCACAAAATGATATAACAAGGTCATACCTACAGCA
TTCCTTTACAACCCCTCCAACTTCAATTAGATTTAAGAAACTAGACATCT
TTGGTCATCCACAAAATCGAATCAGTAAGGTCTAATCCAGTCTTCTCCAT
GCACCCTAGTTCATCTATAGACCTCTACGAAATCTCAATGGTTGAATCAT
AGCTATTATAGTCGGATAAGCAAATCCACGTATCAAACCTTATACCACTG
CCAAAATAGATACACGCATGCCCGATACACCAACTGTAACAGCTCTTTCA
TGTCGCTGATACATGAATACGTAAGTAATGTCCAGTTCATTCGTTATAAA
GAGATTAACATTTCCTACACCAGCATTTCACCCTTGTGATCACCCCTTTT
GTATGGCTACTAGTACTATACTTGCTTCATCGTTCCGATCATTTATTGTT
ATACTCGAACATCTTGTACATGCGTGTCAAGGACAATCCATCTAATTTTT
ACTCCGCATATAATGTATACTTCGTGGTCATAAGAGCAGGCCGTCACAGT
GGCTTGGTACCCCCACCCCTACCCTGAGAATAATGGAGGCTAAGATATAG
CAACAACGTTTGCAGGCACAGGCATCAAAGAGCTCCAGCCATCACTGCTC
AGATCTGACTTGTCGGTGACGGGGACGTACCCGAACAGCTTCATGACTTT
CTGACAGGCGGGGTCGCTCTGGATGAGTCTGATGGCGTCCCAGTCGAGCA
GGGTTTTCCACGGGTCGTTGCTCTGCAGACCAGACTGGGTGTGCGCGTTC
AACCAGTTCAACATCTGTGCACGGA Coding sequence (CDS) from alignment at Sc0000384:19076..22700+ >transcript:BL97046_cuf1 ID=transcript:BL97046_cuf1|Name=transcript:BL97046_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4248bp|location=Sequence derived from alignment at Sc0000384:19076..22700+ (Branchiostoma lanceolatum)
GTCATCCCGACAAGCTGTAACGGGTCTCAAGGCTCCCCGGACACCTTCTC
GACTCTGGAAGCAAAAGTCCACTTCAAGCGCCGCCTGCCGTACTACATTC
TCCGAGTCTACACTCCTACAGCTACGGTCGTGGCCGTGTCATGGATGTCC
TTTTGGGTGCACTACTCGGAGACATCCGCTAGGGTCGCCCTGGGATGCAC
AACCTTCCTCATGCTTGTTCGCCTCGGCAGTCAAGTCGAGAAAATGCCGC
ATATTTCCTACATACGAGCTATTGACCTCTGGTACGTGTTCTGCCTGGCC
TTCGCGTTTATGGTGATCCTTGAGTACGCCGTGGTACACCACCTGCACAA
CCCACAACACAAAAAGGCAAAACAAAAGGAAAAGAAGGGAACAAAGACGC
ATCCCAGCCCCCGGAAGCCTCAGGAGGAGGACTCGGCTGAGGTTGCACCG
CGGCCGGGCAGACGCTTCGCCCAGGCGGTAAACCAGGTACGGGCACGGCA
GGCCAGCGCCGGTAGAAGCAGGGTGTCTCCGGATCTCTCAGCCAACTCCA
GGTCAGACAAACCTGTAACCGCGAAGCCCTCTGGATGGGAACTGATCATC
CCACCTTCACGCCTGCACACCTCCAAACCGTCCCAGGGCCAGGGCAACGC
ACGCCGTGAGGGCGGTGACGGAAGCACGCTGCTGCAGGGGGCCGAGGCAA
ACACGACGTACCATGTGATGGCTGGTCAAACCACCAGAAAGCGGAGGAGA
CACCGCGGAACGCAGGGAGGACAAGAGGAGACGGTGAGGAGGAGTTTCGT
CGCCACCACGTCTCCTGCCCAGCAGACTCAGCACCAGGTCAAGGAATCAA
CTCAGGGAGCCTCTACCTCACCAGACAGCGGTCCGGCGGGGTCAAGGAAG
GAGGAAGAGCCAGCTGCAGTCAACGGACAGAAGAAGGCAGAGCGGAACCA
GGAGATCACCTACAAGAAACCGTGCAACATTGATGAGTGGTCTAGGGTGA
TCTTTCCCGTAGGGTTTCTGCTGTTCTCCATCATATACTGGGCGTATTAT
CTGTATGCCTAAGTCATCCCGACAAGCTGTAACGGGTCTCAAGGCTCCCC
GGACACCTTCTCGACTCTGGAAGCAAAAGTCCACTTCAAGCGCCGCCTGC
CGTACTACATTCTCCGAGTCTACACTCCTACAGCTACGGTCGTGGCCGTG
TCATGGATGTCCTTTTGGGTGCACTACTCGGAGACATCCGCTAGGGTCGC
CCTGGGATGCACAACCTTCCTCATGCTTGTTCGCCTCGGCAGTCAAGTCG
AGAAAATGCCGCATATTTCCTACATACGAGCTATTGACCTCTGGTACGTG
TTCTGCCTGGCCTTCGCGTTTATGGTGATCCTTGAGTACGCCGTGGTACA
CCACCTGCACAACCCACAACACAAAAAGGCAAAACAAAAGGAAAAGAAGG
GAACAAAGACGCATCCCAGCCCCCGGAAGCCTCAGGAGGAGGACTCGGCT
GAGGTTGCACCGCGGCCGGGCAGACGCTTCGCCCAGGCGGTAAACCAGGT
ACGGGCACGGCAGGCCAGCGCCGGTAGAAGCAGGGTGTCTCCGGATCTCT
CAGCCAACTCCAGGTCAGACAAACCTGTAACCGCGAAGCCCTCTGGATGG
GAACTGATCATCCCACCTTCACGCCTGCACACCTCCAAACCGTCCCAGGG
CCAGGGCAACGCACGCCGTGAGGGCGGTGACGGAAGCACGCTGCTGCAGG
GGGCCGAGGCAAACACGACGTACCATGTGATGGCTGGTCAAACCACCAGA
AAGCGGAGGAGACACCGCGGAACGCAGGGAGGACAAGAGGAGACGGTGAG
GAGGAGTTTCGTCGCCACCACGTCTCCTGCCCAGCAGACTCAGCACCAGG
TCAAGGAATCAACTCAGGGAGCCTCTACCTCACCAGACAGCGGTCCGGCG
GGGTCAAGGAAGGAGGAAGAGCCAGCTGCAGTCAACGGACAGAAGAAGGC
AGAGCGGAACCAGGAGATCACCTACAAGAAACCGTGCAACATTGATGAGT
GGTCTAGGGTGATCTTTCCCGTAGGGTTTCTGCTGTTCTCCATCATATAC
TGGGCGTATTATCTGTATGCCTAAGTCATCCCGACAAGCTGTAACGGGTC
TCAAGGCTCCCCGGACACCTTCTCGACTCTGGAAGCAAAAGTCCACTTCA
AGCGCCGCCTGCCGTACTACATTCTCCGAGTCTACACTCCTACAGCTACG
GTCGTGGCCGTGTCATGGATGTCCTTTTGGGTGCACTACTCGGAGACATC
CGCTAGGGTCGCCCTGGGATGCACAACCTTCCTCATGCTTGTTCGCCTCG
GCAGTCAAGTCGAGAAAATGCCGCATATTTCCTACATACGAGCTATTGAC
CTCTGGTACGTGTTCTGCCTGGCCTTCGCGTTTATGGTGATCCTTGAGTA
CGCCGTGGTACACCACCTGCACAACCCACAACACAAAAAGGCAAAACAAA
AGGAAAAGAAGGGAACAAAGACGCATCCCAGCCCCCGGAAGCCTCAGGAG
GAGGACTCGGCTGAGGTTGCACCGCGGCCGGGCAGACGCTTCGCCCAGGC
GGTAAACCAGGTACGGGCACGGCAGGCCAGCGCCGGTAGAAGCAGGGTGT
CTCCGGATCTCTCAGCCAACTCCAGGTCAGACAAACCTGTAACCGCGAAG
CCCTCTGGATGGGAACTGATCATCCCACCTTCACGCCTGCACACCTCCAA
ACCGTCCCAGGGCCAGGGCAACGCACGCCGTGAGGGCGGTGACGGAAGCA
CGCTGCTGCAGGGGGCCGAGGCAAACACGACGTACCATGTGATGGCTGGT
CAAACCACCAGAAAGCGGAGGAGACACCGCGGAACGCAGGGAGGACAAGA
GGAGACGGTGAGGAGGAGTTTCGTCGCCACCACGTCTCCTGCCCAGCAGA
CTCAGCACCAGGTCAAGGAATCAACTCAGGGAGCCTCTACCTCACCAGAC
AGCGGTCCGGCGGGGTCAAGGAAGGAGGAAGAGCCAGCTGCAGTCAACGG
ACAGAAGAAGGCAGAGCGGAACCAGGAGATCACCTACAAGAAACCGTGCA
ACATTGATGAGTGGTCTAGGGTGATCTTTCCCGTAGGGTTTCTGCTGTTC
TCCATCATATACTGGGCGTATTATCTGTATGCCTAAGTCATCCCGACAAG
CTGTAACGGGTCTCAAGGCTCCCCGGACACCTTCTCGACTCTGGAAGCAA
AAGTCCACTTCAAGCGCCGCCTGCCGTACTACATTCTCCGAGTCTACACT
CCTACAGCTACGGTCGTGGCCGTGTCATGGATGTCCTTTTGGGTGCACTA
CTCGGAGACATCCGCTAGGGTCGCCCTGGGATGCACAACCTTCCTCATGC
TTGTTCGCCTCGGCAGTCAAGTCGAGAAAATGCCGCATATTTCCTACATA
CGAGCTATTGACCTCTGGTACGTGTTCTGCCTGGCCTTCGCGTTTATGGT
GATCCTTGAGTACGCCGTGGTACACCACCTGCACAACCCACAACACAAAA
AGGCAAAACAAAAGGAAAAGAAGGGAACAAAGACGCATCCCAGCCCCCGG
AAGCCTCAGGAGGAGGACTCGGCTGAGGTTGCACCGCGGCCGGGCAGACG
CTTCGCCCAGGCGGTAAACCAGGTACGGGCACGGCAGGCCAGCGCCGGTA
GAAGCAGGGTGTCTCCGGATCTCTCAGCCAACTCCAGGTCAGACAAACCT
GTAACCGCGAAGCCCTCTGGATGGGAACTGATCATCCCACCTTCACGCCT
GCACACCTCCAAACCGTCCCAGGGCCAGGGCAACGCACGCCGTGAGGGCG
GTGACGGAAGCACGCTGCTGCAGGGGGCCGAGGCAAACACGACGTACCAT
GTGATGGCTGGTCAAACCACCAGAAAGCGGAGGAGACACCGCGGAACGCA
GGGAGGACAAGAGGAGACGGTGAGGAGGAGTTTCGTCGCCACCACGTCTC
CTGCCCAGCAGACTCAGCACCAGGTCAAGGAATCAACTCAGGGAGCCTCT
ACCTCACCAGACAGCGGTCCGGCGGGGTCAAGGAAGGAGGAAGAGCCAGC
TGCAGTCAACGGACAGAAGAAGGCAGAGCGGAACCAGGAGATCACCTACA
AGAAACCGTGCAACATTGATGAGTGGTCTAGGGTGATCTTTCCCGTAGGG
TTTCTGCTGTTCTCCATCATATACTGGGCGTATTATCTGTATGCCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000384 | genome | Sc0000384:19076..22700 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97046_cuf1 |
| Biotype | protein_coding |
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