transcript:BL97042_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97042_cuf4
Unique Nametranscript:BL97042_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97042_cuf4

>transcript:BL97042_cuf4-protein ID=transcript:BL97042_cuf4-protein|Name=transcript:BL97042_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=150bp
SFLPWRTLSIFAAARQRIQWLRGPPGPPGPHGLPGPPGFPGPKGHKGDGG
DNGIPGKNGFDGQPGPMGLPGAPGVDGRSGPQGPRGDKGPEGQKGQKGNP
GSMGLMGPPGEQGVRGIDGERGSMGPQGLKGTKGEPGRRGGNGMMGPKGE
Run BLAST on NCBI

mRNA from alignment at Sc0000076:244119..246752-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97042_cuf4 ID=transcript:BL97042_cuf4|Name=transcript:BL97042_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2634bp|location=Sequence derived from alignment at Sc0000076:244119..246752- (Branchiostoma lanceolatum)
CTTCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAG AGAATACAATGGCTGCGGGTCAGTACTGGTAAACACTAACGCACACACGG GACGGCCGCTTGTGAGGAACAATGAAGTCATGTTTCAATTCAATCTGCCC GAAAATGCACTATAGTTACTTAGCTGATATTCATATGTCGTATGCGCTGG AATAGGGATGACTATTGTGAAGAAAAATAAGACATTTAAGTACTATTGGC GGTGTTTTAAAGTTTACGGGGCTTGACCGAAGCGACAGCTTTCTGTGGTC GCCAAGGAAGGCGATGGAATAGAATGTTTGAATCTATGTCAATATTTTGA GTATCTCTGAATGCTTACCTTTGAGTGGCAGACACCAATCTCGTTCACGT TGATTAAGTGTGACTCTTGACTTTCAGGGCCCACCGGGACCACCTGGACC TCACGGCCTTCCCGGGCCTCCTGGGTTCCCCGGGCCGAAGGTTTGACGAC AATTTCACCATTTTCTCATGATACATGCATTAGTCTGATGATTCGGCTTT TATCTGACTTCTTGAAACACAGAATGTATGGTATTGATATAATCAATACT GGTGCATCATGTTAATCTATTTCACCATCACCAGGGTCACAAAGGAGACG GCGGAGACAACGGCATTCCTGGGAAGAACGGGTTCGACGTGAGTAGCTGT TCATGTCAGACTTGCGTTTGGTTTGATATGTAAGAATAAGAGTAAAAATA ATGTTTCTGAATCGCTAATTATCCTTAAGATTTTTATGTTACTTGGTGCA CTGTGACTTCTTCCAACAGCAACAATGGTACCGATAGACAGACATACATA GAGAGCCAATGCATAGGGACATAATCTCCAAGCAGATCTAATGTTTGCGA AAACCATATTCAACTGGCAAAAGAAGTTATAGGGACAAAGGGTCCAAGGC GGATTGATAATTTGTCTAAGAAATGGCATCAACGTCTTTGGACATCTCAT GAACATCAGCATATTTTTTGCGATACTTATATCATATGCATGTCATTATC GAAAACAGCTATTTGTTTGCATGTTGTTGAAGTGACAACTGAGTTGGTGA TGTTACAGGGACAACCTGGACCCATGGGTCTCCCCGGGGCACCCGGTGTG GACGGACGATCAGTGAGTATCAAACGTCTTTGTTTCACCAATGGTGGCAA AGTTTAAACCACCACTACTGGGTGGAACGGCTGCTGAAATAGTTTTAGAA GATGAAGCTTCATCTGGACATGCACACCTGCCATTGGCAGTGGATCTATA CAGCTACCATTCCACCAATTATGGTTGAAAGTATTGAAGAGGTTTTTCTA GGTAGATAAAAATGTTGACATTGTACATCAGCAAATTGTTTTCACACAAG TCATTTTGTTTTCTGCCGGTAATATTACTACTAATGCAGGCATTGCTTCT TCCTGTAGGGACCACAGGGGCCGAGGGGCGACAAAGGACCCGAGGGACAG AAGGGGCAAAAGGTAGGCAAGATACAACAGCAGACAGGTAACCAATGGCT TGACTGAGTCCTTTACTTTGGTTGATGAAGTTGGAGATGTTGACAAGTTT TTTTCCTACCCCCTAGGGTAACCCAGGGTCCATGGGTCTGATGGGACCAC CAGGTGAACAGGGAGTGCGTGTAAGTACACGTGGTCAGACACATTCTTCA ACCTGATTCTGACACGTCCACTGTACCACTGGAACAGACTGTAACAGACT GTACCACTCCCCACCCAACTCTATTCTGGGCAATCAGACTCTTGATACCA CAGACTAGTGCTACATACCTAAACCCCGGACCTGATCCAGACTGGACCTA ATGTTTAGGTTCAAGTCCAAAAAAACCTAAACGTCTGAAAACAAGTCCGA ACTTCAAAAATAATCTCTTACTTATACTCTCCTTTTTGTTTTAAACCTTC CTTAGATCATGAAATTTGCACTGGAAAAATGTGAAAACATTGCCGTTTTT GTGTTTCTAACTGAACTTTTATGTTTACTACTGACTGTATATAATTTCGC ATATATAGTTGCACAGATTGCAAAGAAAATATATGCCAATATGCAATTTT ACATGTAACAGTAAAAAAATGTTTTTAGCACACATATGCCATGGGTTCGG GTCCGGACTTATAAGTCCAGATCTGAACCTGAACCTCTGGATCTAAATCC GGACCTGAACATGAACACGGGTTTAGGTACACAGCACTACCACAGACTAT ACGAAAACATTAGATTACAACTACTACTGGTACTTGAGATAAAAGCATCT TGGTGTTGTTGTTTGTTAGAATGTGATTAATGCTAATTTTCATTCCATCA TCATTTGTTCATGTACAGGGTATTGACGGAGAGAGAGGCAGTATGGGACC ACAAGGCCTGAAGGGAACCAAGGTAAAGATGTTCTTTCCTCGATACAGCT ATGATTTTTGACCATGAATGATGATTTCTCGTTGCACAATATTGAAATTG AATGCACCTTGTACCTGCATTATGTCACCATGATATAGAATGACTGTGAA ATAAGGTGTTTTACTCTTGTGTGCTGTACAGGGAGAGCCAGGCAGGAGGG GAGGAAACGGAATGATGGGACCCAAGGGAGAGCC

Coding sequence (CDS) from alignment at Sc0000076:244119..246752-

>transcript:BL97042_cuf4 ID=transcript:BL97042_cuf4|Name=transcript:BL97042_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3600bp|location=Sequence derived from alignment at Sc0000076:244119..246752- (Branchiostoma lanceolatum)
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
TCTTTTCTGCCTTGGCGGACCCTGTCCATCTTTGCTGCTGCTCGACAGAG
AATACAATGGCTGCGGGGCCCACCGGGACCACCTGGACCTCACGGCCTTC
CCGGGCCTCCTGGGTTCCCCGGGCCGAAGGGTCACAAAGGAGACGGCGGA
GACAACGGCATTCCTGGGAAGAACGGGTTCGACGGACAACCTGGACCCAT
GGGTCTCCCCGGGGCACCCGGTGTGGACGGACGATCAGGACCACAGGGGC
CGAGGGGCGACAAAGGACCCGAGGGACAGAAGGGGCAAAAGGGTAACCCA
GGGTCCATGGGTCTGATGGGACCACCAGGTGAACAGGGAGTGCGTGGTAT
TGACGGAGAGAGAGGCAGTATGGGACCACAAGGCCTGAAGGGAACCAAGG
GAGAGCCAGGCAGGAGGGGAGGAAACGGAATGATGGGACCCAAGGGAGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97042gene:BL97042Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97042_cuf4transcript:BL97042_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97042_cuf4-E1BL97042_cuf4-E1-1564476830-271717Branchiostoma lanceolatumexon
BL97042_cuf4-E2BL97042_cuf4-E2-1564476830-271714Branchiostoma lanceolatumexon
BL97042_cuf4-E3BL97042_cuf4-E3-1564476830-271712Branchiostoma lanceolatumexon
BL97042_cuf4-E4BL97042_cuf4-E4-1564476830-271710Branchiostoma lanceolatumexon
BL97042_cuf4-E5BL97042_cuf4-E5-1564476830-271708Branchiostoma lanceolatumexon
BL97042_cuf4-E6BL97042_cuf4-E6-1564476830-271706Branchiostoma lanceolatumexon
BL97042_cuf4-E7BL97042_cuf4-E7-1564476830-271704Branchiostoma lanceolatumexon
BL97042_cuf4-E8BL97042_cuf4-E8-1564476830-271702Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000076genomeSc0000076:244119..246752 -
Properties
Property NameValue
Transcript idBL97042_cuf4
Biotypeprotein_coding