transcript:BL97017_cuf11 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97017_cuf11
Unique Nametranscript:BL97017_cuf11
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97017_cuf11

>transcript:BL97017_cuf11-protein ID=transcript:BL97017_cuf11-protein|Name=transcript:BL97017_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=178bp
QLKTKIEETMTKTLLTTVGFQGLQVVEFKRTESNNIRVVVNMVTAQYAQT
VSQQAFVNVVTTGQIADLAVVKTSAAIQKVVTTSQTAQVTVNQPWSSELM
NKTTKTFITLQKQVENGISVELGNTIGFQRAMVVNFKQSSSNTIIVTTRL
IAASYATVSVQSAFVSTVTNGQINQIVV
Run BLAST on NCBI

mRNA from alignment at Sc0000025:1366537..1370245+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97017_cuf11 ID=transcript:BL97017_cuf11|Name=transcript:BL97017_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=3709bp|location=Sequence derived from alignment at Sc0000025:1366537..1370245+ (Branchiostoma lanceolatum)
AGCAACTCAAGACCAAGATAGAAGAGACGGTAGACTTTCACTAGTGTTAT
TGATACTGAATTATCAATTTTTAACATTTTCATTTGGTTGATGATCATAA
ATGTATTGCCCCTTCCCCATTTTGCGGCTAAATGCCTATAAGCTCCAGAC
CATGCAATGACCAGAATATTAATTGGTGGATGATAAAGAATAGCTGAAAT
AATTATACATGGTAATTTATTAGAAACGTTTTGCATAAAGGTTTAGTTTT
CTCGGATTTTTTTCAGATGACGAAGACGCTTCTTACAACAGTTGGTTTTC
AAGGTCTGCAAGTGGTTGAGTTCAAACGGACGTAAGTACGTTTACTTATC
ATTGACAGAACGATGCTTTTCAAATACATTGTATTAGCTGCATGGGTATA
ACTTTCAATGTTTTCTTCGCAGGGAGTCCAACAACATCCGGGTGGTAGTG
AACATGGTGACTGCACAGTACGCACAGACTGTATCCCAGCAGGCCTTTGT
GAACGTCGTGACTACGGGTCAAATCGCTGATCTAGCTGTTGTTAAAACAT
CAGCTGCCATCCAGAAAGTTGGTGAGTAATTCCCAAGAACTATCGTGGTA
ATAGCGAGCTTATTCGTCTTAAAATCAATGTACAATACTATTAAGCATGT
CTACTTTTTAAACAATTTTTAATATGTTTGTCACAGTGACAACTTCACAG
ACAGCTCAAGTGACTGTGAACCAACCATGGTCATCTGAACTGATGAATAA
GACAACTAAGACTTTCATTACTCTGCAGAAGCAAGTGGAGAATGGGGTGA
GTGTATGGTTTGGGAAACCCAGTCATACTTAAGACCTCGTACATTCTTTC
GTTGCTTAAGTACAGAGATACGATCATACATACGCTACAAGTCGGGGTAA
AGGTCGGGTTACGGACCTTTCAAACTACTTTGGCTGCGTTGGAAATGACC
ATTCAAACGTTAAAAGTCGGGGTACATATGCTACAGGTCGGGGTGCGGAC
CTTTCAAACTACATTGGCTGATTTGGAAATGACCATTCAAACGTTAAAAG
TCGGGGTACATACGCTACAATTCGGGGTACATACGCTACAAGTCGGGGTA
CATACGCTACAGGTCGGGGTACATACGCTACAAGTCGGGGTACAGGTCAA
AGTAATCCAAAATGTCATTGTTCTTACATTGTTACTCCGGGGAGGAGGTG
TGACCTCCTTCTGGGAGTATTGGGAATGTATTGTTGTTTGCGCGTTCGCA
GCTATAACTCACGATCCCGTCGTCGCATTGGTGTGTAACTTGGCATATCG
TTTGCCTGGTTCGGCGTGGTGATGCACAATAGCTTTGTTACACCATAACT
ACTTTAAACGTCAATCCAATATCGTAATTGCACCCCTATAATTAATGCTA
TGTCCCACTGCCCTGCCATAGGGACCATGTTATAATCCGTTATGCATGAC
TGGAATACTTCAGGCAGATACGGGGTATAAATCTTCCTTACTTGCTGTGA
TCGTATAGTCACTGTTACATTGAAAAATAGACAACGTGCATCACCACACG
CAACCTAGCAAACGATATACCAAGTTACATACCAATGCGGCAACGGGAAT
TGTGAGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCTGGTTTCAACCAAGCC
CCGTGTCCGCCCGCCGCCTGTAACGGCTATCCACCCACGGAGCTTGGTGG
GAAGCGCCGGTAACACGGGAGAAGCCCACAGAGCTGCCTGCCTAGGCCAG
ACTCTAGTTGCTAAGGATGATTATTGCTGTTGCTATCCAGTGATTGACAG
CTGGAGATGTCTGATCTGCAGGTGGTAGGAATAGAGTTTCACAGGCCGTT
TCTCTGTACTTTGAACACTTTTCGGCAGTCAAGTCTTTTCTTGTTGGATT
TTCAAACTTGGTTTTTGATGTGGGAGAAACTGACATTGTCTGCCTCTAAA
GGAACAGATAAACTAAGTACTAGGTTTAAAATCCCTTTAACCGGCTTGGA
TACATCTCATTTCTCACCCTCCCAACATCTGGATCTCATTTCCCATCCCT
TTCTCCCTGTCTGCCTGTGTGACAGCTAACAGACAGGATAACAAGGTGGT
TTCTATGGCAATGGGAGCCTAGCTGAAATCCTGCCCTGTGATTGGTGTTA
CCATTTTCGATAACGGCTCCCCAGCCTTAGAGAGAGCCGCGCACAAACTC
CGCGGGGAGGGGAGAGAAACCCCCGGACAGCTGGAGTTTGCTTGATACAG
ACTATACTTGTACATACTATAAATACTTCACGGAGAATTGTGTCCTACGG
ACTCTTGTTCTTCTTACAAATACTTTCAAGTCAACATACGTATCTTATGA
AATTCTGTTTTTGGTTTTGAAATTTCGAGCTAATTGCTTACTTTAATGTT
CACAGATTAGCGTTGAGCTTGGGAACACCATTGGATTCCAGCGTGCGATG
GTTGTGAATTTCAAACAAAGGTTGGACGAAAATCATAATTTTGCTGCCAA
TATCTTATAGTTATATTGCATTTCTATGATTCTATATTGGATGGAATATG
TTTCAAGCTAGCTATAGAAATCAATGATAAGACACTACAGTACTAAACGT
TAAGTCCAAATGTGTAGACTTCAAAATTTCACAATGACAAAACGTGATGA
TGTATGTTTTAGGATAGGCTTAAGTTTATGGGTCCCGTTACTAACTTTGA
AAATTTTACTATTACATTGCTCAACCCATACATATAAGATTCAGTGCTCA
AATAATTGTTAAGTTCGTATGCTGACCTTCATAATGTAATAATGAACGTA
TTTCAATTTCTTATATTTGTATCTTTTATTTCCCAACAGCTCGAGCAACA
CTATCATAGTGACCACACGTTTGATCGCAGCCAGTTACGCGACCGTCTCC
GTCCAGTCTGCGTTTGTGAGCACGGTGACCAACGGGCAGATCAACCAGAT
CGTGGTGGA

Coding sequence (CDS) from alignment at Sc0000025:1366537..1370245+

>transcript:BL97017_cuf11 ID=transcript:BL97017_cuf11|Name=transcript:BL97017_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=3204bp|location=Sequence derived from alignment at Sc0000025:1366537..1370245+ (Branchiostoma lanceolatum)
CAACTCAAGACCAAGATAGAAGAGACGATGACGAAGACGCTTCTTACAAC
AGTTGGTTTTCAAGGTCTGCAAGTGGTTGAGTTCAAACGGACGGAGTCCA
ACAACATCCGGGTGGTAGTGAACATGGTGACTGCACAGTACGCACAGACT
GTATCCCAGCAGGCCTTTGTGAACGTCGTGACTACGGGTCAAATCGCTGA
TCTAGCTGTTGTTAAAACATCAGCTGCCATCCAGAAAGTTGTGACAACTT
CACAGACAGCTCAAGTGACTGTGAACCAACCATGGTCATCTGAACTGATG
AATAAGACAACTAAGACTTTCATTACTCTGCAGAAGCAAGTGGAGAATGG
GATTAGCGTTGAGCTTGGGAACACCATTGGATTCCAGCGTGCGATGGTTG
TGAATTTCAAACAAAGCTCGAGCAACACTATCATAGTGACCACACGTTTG
ATCGCAGCCAGTTACGCGACCGTCTCCGTCCAGTCTGCGTTTGTGAGCAC
GGTGACCAACGGGCAGATCAACCAGATCGTGGTGCAACTCAAGACCAAGA
TAGAAGAGACGATGACGAAGACGCTTCTTACAACAGTTGGTTTTCAAGGT
CTGCAAGTGGTTGAGTTCAAACGGACGGAGTCCAACAACATCCGGGTGGT
AGTGAACATGGTGACTGCACAGTACGCACAGACTGTATCCCAGCAGGCCT
TTGTGAACGTCGTGACTACGGGTCAAATCGCTGATCTAGCTGTTGTTAAA
ACATCAGCTGCCATCCAGAAAGTTGTGACAACTTCACAGACAGCTCAAGT
GACTGTGAACCAACCATGGTCATCTGAACTGATGAATAAGACAACTAAGA
CTTTCATTACTCTGCAGAAGCAAGTGGAGAATGGGATTAGCGTTGAGCTT
GGGAACACCATTGGATTCCAGCGTGCGATGGTTGTGAATTTCAAACAAAG
CTCGAGCAACACTATCATAGTGACCACACGTTTGATCGCAGCCAGTTACG
CGACCGTCTCCGTCCAGTCTGCGTTTGTGAGCACGGTGACCAACGGGCAG
ATCAACCAGATCGTGGTGCAACTCAAGACCAAGATAGAAGAGACGATGAC
GAAGACGCTTCTTACAACAGTTGGTTTTCAAGGTCTGCAAGTGGTTGAGT
TCAAACGGACGGAGTCCAACAACATCCGGGTGGTAGTGAACATGGTGACT
GCACAGTACGCACAGACTGTATCCCAGCAGGCCTTTGTGAACGTCGTGAC
TACGGGTCAAATCGCTGATCTAGCTGTTGTTAAAACATCAGCTGCCATCC
AGAAAGTTGTGACAACTTCACAGACAGCTCAAGTGACTGTGAACCAACCA
TGGTCATCTGAACTGATGAATAAGACAACTAAGACTTTCATTACTCTGCA
GAAGCAAGTGGAGAATGGGATTAGCGTTGAGCTTGGGAACACCATTGGAT
TCCAGCGTGCGATGGTTGTGAATTTCAAACAAAGCTCGAGCAACACTATC
ATAGTGACCACACGTTTGATCGCAGCCAGTTACGCGACCGTCTCCGTCCA
GTCTGCGTTTGTGAGCACGGTGACCAACGGGCAGATCAACCAGATCGTGG
TGCAACTCAAGACCAAGATAGAAGAGACGATGACGAAGACGCTTCTTACA
ACAGTTGGTTTTCAAGGTCTGCAAGTGGTTGAGTTCAAACGGACGGAGTC
CAACAACATCCGGGTGGTAGTGAACATGGTGACTGCACAGTACGCACAGA
CTGTATCCCAGCAGGCCTTTGTGAACGTCGTGACTACGGGTCAAATCGCT
GATCTAGCTGTTGTTAAAACATCAGCTGCCATCCAGAAAGTTGTGACAAC
TTCACAGACAGCTCAAGTGACTGTGAACCAACCATGGTCATCTGAACTGA
TGAATAAGACAACTAAGACTTTCATTACTCTGCAGAAGCAAGTGGAGAAT
GGGATTAGCGTTGAGCTTGGGAACACCATTGGATTCCAGCGTGCGATGGT
TGTGAATTTCAAACAAAGCTCGAGCAACACTATCATAGTGACCACACGTT
TGATCGCAGCCAGTTACGCGACCGTCTCCGTCCAGTCTGCGTTTGTGAGC
ACGGTGACCAACGGGCAGATCAACCAGATCGTGGTGCAACTCAAGACCAA
GATAGAAGAGACGATGACGAAGACGCTTCTTACAACAGTTGGTTTTCAAG
GTCTGCAAGTGGTTGAGTTCAAACGGACGGAGTCCAACAACATCCGGGTG
GTAGTGAACATGGTGACTGCACAGTACGCACAGACTGTATCCCAGCAGGC
CTTTGTGAACGTCGTGACTACGGGTCAAATCGCTGATCTAGCTGTTGTTA
AAACATCAGCTGCCATCCAGAAAGTTGTGACAACTTCACAGACAGCTCAA
GTGACTGTGAACCAACCATGGTCATCTGAACTGATGAATAAGACAACTAA
GACTTTCATTACTCTGCAGAAGCAAGTGGAGAATGGGATTAGCGTTGAGC
TTGGGAACACCATTGGATTCCAGCGTGCGATGGTTGTGAATTTCAAACAA
AGCTCGAGCAACACTATCATAGTGACCACACGTTTGATCGCAGCCAGTTA
CGCGACCGTCTCCGTCCAGTCTGCGTTTGTGAGCACGGTGACCAACGGGC
AGATCAACCAGATCGTGGTGCAACTCAAGACCAAGATAGAAGAGACGATG
ACGAAGACGCTTCTTACAACAGTTGGTTTTCAAGGTCTGCAAGTGGTTGA
GTTCAAACGGACGGAGTCCAACAACATCCGGGTGGTAGTGAACATGGTGA
CTGCACAGTACGCACAGACTGTATCCCAGCAGGCCTTTGTGAACGTCGTG
ACTACGGGTCAAATCGCTGATCTAGCTGTTGTTAAAACATCAGCTGCCAT
CCAGAAAGTTGTGACAACTTCACAGACAGCTCAAGTGACTGTGAACCAAC
CATGGTCATCTGAACTGATGAATAAGACAACTAAGACTTTCATTACTCTG
CAGAAGCAAGTGGAGAATGGGATTAGCGTTGAGCTTGGGAACACCATTGG
ATTCCAGCGTGCGATGGTTGTGAATTTCAAACAAAGCTCGAGCAACACTA
TCATAGTGACCACACGTTTGATCGCAGCCAGTTACGCGACCGTCTCCGTC
CAGTCTGCGTTTGTGAGCACGGTGACCAACGGGCAGATCAACCAGATCGT
GGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97017gene:BL97017Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97017_cuf11transcript:BL97017_cuf11-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97017_cuf11-E1BL97017_cuf11-E1-1564476830-161395Branchiostoma lanceolatumexon
BL97017_cuf11-E2BL97017_cuf11-E2-1564476830-161397Branchiostoma lanceolatumexon
BL97017_cuf11-E3BL97017_cuf11-E3-1564476830-161399Branchiostoma lanceolatumexon
BL97017_cuf11-E4BL97017_cuf11-E4-1564476830-161401Branchiostoma lanceolatumexon
BL97017_cuf11-E5BL97017_cuf11-E5-1564476830-161403Branchiostoma lanceolatumexon
BL97017_cuf11-E6BL97017_cuf11-E6-1564476830-161406Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000025genomeSc0000025:1366537..1370245 +
Properties
Property NameValue
Transcript idBL97017_cuf11
Biotypeprotein_coding