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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97015_cuf9 >transcript:BL97015_cuf9-protein ID=transcript:BL97015_cuf9-protein|Name=transcript:BL97015_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=259bp
STVVVTTRLMAASYAVKNIQNVFESSVSSGKIGTVTVQPQSAVVTEDVST
SATVSMSVPVTWSVDFQNKSSQAYQDLKVKIEQNVNEKLLTTAGLSGIEV
TQLKQTQSGKVEVILRVVAAQYALTQVQQNFVTLVQTGRIGTLNVISSSA
VIKKDVTLSKTAEMTVSQVWSAELTNTSSKAFTMLKTQVQEAVTSELVDT
IGFQRVNVTTFKQGTSNTTVAVMRMIVAAYASKAVEASFQQVVSTGQVGI
LSLNSTSVT Run BLAST on NCBI mRNA from alignment at Sc0000025:1359790..1363105+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97015_cuf9 ID=transcript:BL97015_cuf9|Name=transcript:BL97015_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=3316bp|location=Sequence derived from alignment at Sc0000025:1359790..1363105+ (Branchiostoma lanceolatum)
CGTCCACAGTAGTTGTGACAACTCGGTTGATGGCCGCATCCTATGCTGTG
AAGAATATTCAGAACGTTTTTGAATCAAGCGTTTCGTCTGGAAAGATTGG
GACAGTCACAGTGCAGCCGCAGTCTGCTGTTGTAACTGAAGATGGTAAGG
AATAATATGTTTAGCATATAACACAGCCTCCAGTTTAATTTGGGATTATT
TAACTGCCTATCACATTTCAGCCATCTTAAACCAAAATGGCTTAATATCA
CATCTGGTAGGTAAAAATAAAGTTCAAGATATGTAGCAGCCATTGATGAC
ATCAAACTACTTGACAATGTGTAGATTGCTTGTGAAAAGTAATTTCATGA
CAGACGGGTTAAAAAACATTATTATATACATTCAGTAAATGAACTGACTT
ATTTTCATGGATATGTATGATACAAAAACATAACGAGACTAGTATAGATT
TTCTAAGCTTCCTTTGAAGTATTTTTCTACATAGAGGATATGCTTCATAC
ATCATTTTATGTATTGTTTTCAGTCAGTACATCGGCCACTGTGTCGATGT
CCGTACCAGTGACCTGGTCTGTCGACTTCCAGAACAAATCATCGCAAGCG
TACCAGGATCTTAAGGTCAAAATAGAGCAAAATGTAAGTTTTCTTTACAA
AATATGTCAGTTGCAACATCGAAAGAAAGTTTATGGAGCTGTTGCATAAT
TGTAGATGATGTCGTTCATCACAGCCTTATTTGCTGCATTAGATTCTTTG
TTTTGCCATTGTTCTAATCTTAAGCCATGATTTTCATTTTTTACAATGAA
TGTTAACAAAGAGTGTGTGGTGCTGAACTACAGGTGAATGAAAAGTTGCT
GACAACAGCTGGCCTCAGTGGTATAGAAGTCACTCAACTGAAGCAAACGT
AAGTAACATAGGACTCTAGAAATTAAATTTAGTTATCTGAGAAGTCAATA
GAAAACTGCCTGACAGACATGATAGTACAGTGACAAAGAAACAAATGCAT
AACTTGCCCATTTTCTAATTCAAACATCTTCATTCACATTGTTTATTTGT
GCATATGCGCATTTTTAGCTACCAATTCTAAAATCAGCAGAGCAAACCTC
ANTTTGAATCAAGCGTTTCGTCTGGAAAGATTGGGACAGTCACAGTGCAG
CCGCAGTCTGCTGTTGTAACTGAAGATGGTAAGGAATTACATGTAAAGCT
TANAGCTGAAGAAAACGTAAGTAACATAGGACTCTAGAAATTAAATTTAA
TTATCTGTGAAGTCAATAGAAAATTGCCTGCATGATAGTACAGGGACAAA
GAATATTTTCTAATACAAGCATCTTCATTGAATTCACATTGTTTTTTTGT
GCATATGCGCAATTTCAGCTACCAATTCTAAAATCAGCAGAGCAAACCTT
AGTGTTCTTATGAAATTCAAATAAGCTACAATATGACATTACTTTCTACC
ACAAAGGGAATAGTTACTGCTTAAGGGCATGAACATGTAAGACGGTAAGA
CTAGATACCAAATTTAGCTGTTCTGTTGTTTTCATACATTCTAATTCCAG
ACAATCGGGAAAAGTTGAAGTTATCCTGAGGGTTGTTGCTGCTCAGTATG
CCTTGACTCAAGTCCAGCAGAACTTTGTGACACTGGTGCAAACGGGCAGG
ATTGGAACTCTGAATGTCATCTCCTCATCTGCCGTCATAAAGAAAGATGG
TGAGTGCTCAATCGTACCAATAATAAACAAATGTAGCTGACTAAGATGTG
TGGACAAATCTTTACAAAAAAGTACCCATTGCATGTTTCCATGTCATACT
ATTCATAGTTTATTTGGCACAAGCATGTATTACAGCCACTGTGATATCTA
AAGTATCCCAAATGAAAAAAAACACTTTATGTACGTTACGTTTCACATTT
TGAAACTACTGGTTGAATGCTACATACCTACCGCACATTCACTGTCATAT
GATCTTGTAGGCTGGCTGTCCACAATTTTCTACTTCTAGCCTGTCATGCC
AAGCGTTAAAATTTCAATTGCTTGCAGTCTTTAAAAAAGAAACAAAGATA
TGTCTACAACTGGAAAGTCAATAACATACATTGGATGCAGTTTGGATAAA
AGATTACAATTTGATCATTTTTCAGTGACCCTTTCCAAGACCGCTGAGAT
GACCGTTAGCCAGGTCTGGTCAGCCGAACTAACCAACACCAGCAGCAAAG
CCTTCACCATGCTGAAGACTCAAGTGCAGGAGGCTGTGAGTTTATCCTGT
TGCATATGTGAATAGTTTCAACAGGTCGATAGTATGATATTGGAGCTTCC
CTAGCTTCGTGGAAGGTATCATACATACTTGACAGGAAAGAGAAACTAAC
TAGAAAACTCTGTATCCGGATCCTCACCCTATCTTGTATACAGACCAATA
TTTTTGGTTATCTTGTCAAACTCCTAGATCCGCCTACATAGGTCATTTTT
GTTTTGATTTATTCTACTTGATGACGATGAAACCCATATACTGTTATTTA
TATTATTTTGTAGTTCTAACTGCAGGATAGATTAGCCTGGCAGTGTTCGA
GCTATATATCGTACCATATAAGATTGTCGAGCTATCAAAGTTCATTCTTC
TCTTTTGGGCTATTTAAGATCATGGAATGAAAAGACTTGTTTGTTTATCA
TACAGGTGACGTCGGAGCTGGTAGACACCATTGGTTTCCAACGTGTAAAT
GTGACAACATTCAAGCAGGGGTGAGTTGTGTGTAAACACTTGTAATAAGG
CAGCGCTTGGTATTAAAAGTGCCAGTAAAATCAACTTTTCTCTAACATTC
ACATGAAAACATATAATAATATAATCTTTAAATCAGTTGGCTACTGTGTG
CTGTTTAGTGGGCGAAATTAGCAACGGTCAAGACGTCACAGAATCTTCCA
ATAGTTAGTATGACTGTACTAGGAGTCATTTCTGTGACGTCCCGACCCGT
TGCTAATCTGCCCCACCAAAGAGCACACAGTAAAAGATTGATTTAAAGAT
TACATATTATTAGGTGTTTAAGAAAGACGATTTTTACATCCATGATAGAG
AACATTTGATTTCAATGGGACTCTTTTTTGTATAATGTATCTTATATATA
TCTATGTTTTTATTTTCTGACAAGTTTTATGCCATTTTCTTTGTGTATAT
CAATGCCTAACCTGTTTAATTGTGGTACAGAACCAGCAACACCACTGTTG
CAGTGATGCGGATGATTGTTGCCGCCTACGCAAGCAAAGCTGTCGAGGCA
TCATTCCAACAAGTCGTCTCAACAGGACAAGTTGGGATTCTAAGTCTGAA
CTCAACATCAGTTACG Coding sequence (CDS) from alignment at Sc0000025:1359790..1363105+ >transcript:BL97015_cuf9 ID=transcript:BL97015_cuf9|Name=transcript:BL97015_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=5439bp|location=Sequence derived from alignment at Sc0000025:1359790..1363105+ (Branchiostoma lanceolatum)
TCCACAGTAGTTGTGACAACTCGGTTGATGGCCGCATCCTATGCTGTGAA
GAATATTCAGAACGTTTTTGAATCAAGCGTTTCGTCTGGAAAGATTGGGA
CAGTCACAGTGCAGCCGCAGTCTGCTGTTGTAACTGAAGATGTCAGTACA
TCGGCCACTGTGTCGATGTCCGTACCAGTGACCTGGTCTGTCGACTTCCA
GAACAAATCATCGCAAGCGTACCAGGATCTTAAGGTCAAAATAGAGCAAA
ATGTGAATGAAAAGTTGCTGACAACAGCTGGCCTCAGTGGTATAGAAGTC
ACTCAACTGAAGCAAACACAATCGGGAAAAGTTGAAGTTATCCTGAGGGT
TGTTGCTGCTCAGTATGCCTTGACTCAAGTCCAGCAGAACTTTGTGACAC
TGGTGCAAACGGGCAGGATTGGAACTCTGAATGTCATCTCCTCATCTGCC
GTCATAAAGAAAGATGTGACCCTTTCCAAGACCGCTGAGATGACCGTTAG
CCAGGTCTGGTCAGCCGAACTAACCAACACCAGCAGCAAAGCCTTCACCA
TGCTGAAGACTCAAGTGCAGGAGGCTGTGACGTCGGAGCTGGTAGACACC
ATTGGTTTCCAACGTGTAAATGTGACAACATTCAAGCAGGGAACCAGCAA
CACCACTGTTGCAGTGATGCGGATGATTGTTGCCGCCTACGCAAGCAAAG
CTGTCGAGGCATCATTCCAACAAGTCGTCTCAACAGGACAAGTTGGGATT
CTAAGTCTGAACTCAACATCAGTTACGTCCACAGTAGTTGTGACAACTCG
GTTGATGGCCGCATCCTATGCTGTGAAGAATATTCAGAACGTTTTTGAAT
CAAGCGTTTCGTCTGGAAAGATTGGGACAGTCACAGTGCAGCCGCAGTCT
GCTGTTGTAACTGAAGATGTCAGTACATCGGCCACTGTGTCGATGTCCGT
ACCAGTGACCTGGTCTGTCGACTTCCAGAACAAATCATCGCAAGCGTACC
AGGATCTTAAGGTCAAAATAGAGCAAAATGTGAATGAAAAGTTGCTGACA
ACAGCTGGCCTCAGTGGTATAGAAGTCACTCAACTGAAGCAAACACAATC
GGGAAAAGTTGAAGTTATCCTGAGGGTTGTTGCTGCTCAGTATGCCTTGA
CTCAAGTCCAGCAGAACTTTGTGACACTGGTGCAAACGGGCAGGATTGGA
ACTCTGAATGTCATCTCCTCATCTGCCGTCATAAAGAAAGATGTGACCCT
TTCCAAGACCGCTGAGATGACCGTTAGCCAGGTCTGGTCAGCCGAACTAA
CCAACACCAGCAGCAAAGCCTTCACCATGCTGAAGACTCAAGTGCAGGAG
GCTGTGACGTCGGAGCTGGTAGACACCATTGGTTTCCAACGTGTAAATGT
GACAACATTCAAGCAGGGAACCAGCAACACCACTGTTGCAGTGATGCGGA
TGATTGTTGCCGCCTACGCAAGCAAAGCTGTCGAGGCATCATTCCAACAA
GTCGTCTCAACAGGACAAGTTGGGATTCTAAGTCTGAACTCAACATCAGT
TACGTCCACAGTAGTTGTGACAACTCGGTTGATGGCCGCATCCTATGCTG
TGAAGAATATTCAGAACGTTTTTGAATCAAGCGTTTCGTCTGGAAAGATT
GGGACAGTCACAGTGCAGCCGCAGTCTGCTGTTGTAACTGAAGATGTCAG
TACATCGGCCACTGTGTCGATGTCCGTACCAGTGACCTGGTCTGTCGACT
TCCAGAACAAATCATCGCAAGCGTACCAGGATCTTAAGGTCAAAATAGAG
CAAAATGTGAATGAAAAGTTGCTGACAACAGCTGGCCTCAGTGGTATAGA
AGTCACTCAACTGAAGCAAACACAATCGGGAAAAGTTGAAGTTATCCTGA
GGGTTGTTGCTGCTCAGTATGCCTTGACTCAAGTCCAGCAGAACTTTGTG
ACACTGGTGCAAACGGGCAGGATTGGAACTCTGAATGTCATCTCCTCATC
TGCCGTCATAAAGAAAGATGTGACCCTTTCCAAGACCGCTGAGATGACCG
TTAGCCAGGTCTGGTCAGCCGAACTAACCAACACCAGCAGCAAAGCCTTC
ACCATGCTGAAGACTCAAGTGCAGGAGGCTGTGACGTCGGAGCTGGTAGA
CACCATTGGTTTCCAACGTGTAAATGTGACAACATTCAAGCAGGGAACCA
GCAACACCACTGTTGCAGTGATGCGGATGATTGTTGCCGCCTACGCAAGC
AAAGCTGTCGAGGCATCATTCCAACAAGTCGTCTCAACAGGACAAGTTGG
GATTCTAAGTCTGAACTCAACATCAGTTACGTCCACAGTAGTTGTGACAA
CTCGGTTGATGGCCGCATCCTATGCTGTGAAGAATATTCAGAACGTTTTT
GAATCAAGCGTTTCGTCTGGAAAGATTGGGACAGTCACAGTGCAGCCGCA
GTCTGCTGTTGTAACTGAAGATGTCAGTACATCGGCCACTGTGTCGATGT
CCGTACCAGTGACCTGGTCTGTCGACTTCCAGAACAAATCATCGCAAGCG
TACCAGGATCTTAAGGTCAAAATAGAGCAAAATGTGAATGAAAAGTTGCT
GACAACAGCTGGCCTCAGTGGTATAGAAGTCACTCAACTGAAGCAAACAC
AATCGGGAAAAGTTGAAGTTATCCTGAGGGTTGTTGCTGCTCAGTATGCC
TTGACTCAAGTCCAGCAGAACTTTGTGACACTGGTGCAAACGGGCAGGAT
TGGAACTCTGAATGTCATCTCCTCATCTGCCGTCATAAAGAAAGATGTGA
CCCTTTCCAAGACCGCTGAGATGACCGTTAGCCAGGTCTGGTCAGCCGAA
CTAACCAACACCAGCAGCAAAGCCTTCACCATGCTGAAGACTCAAGTGCA
GGAGGCTGTGACGTCGGAGCTGGTAGACACCATTGGTTTCCAACGTGTAA
ATGTGACAACATTCAAGCAGGGAACCAGCAACACCACTGTTGCAGTGATG
CGGATGATTGTTGCCGCCTACGCAAGCAAAGCTGTCGAGGCATCATTCCA
ACAAGTCGTCTCAACAGGACAAGTTGGGATTCTAAGTCTGAACTCAACAT
CAGTTACGTCCACAGTAGTTGTGACAACTCGGTTGATGGCCGCATCCTAT
GCTGTGAAGAATATTCAGAACGTTTTTGAATCAAGCGTTTCGTCTGGAAA
GATTGGGACAGTCACAGTGCAGCCGCAGTCTGCTGTTGTAACTGAAGATG
TCAGTACATCGGCCACTGTGTCGATGTCCGTACCAGTGACCTGGTCTGTC
GACTTCCAGAACAAATCATCGCAAGCGTACCAGGATCTTAAGGTCAAAAT
AGAGCAAAATGTGAATGAAAAGTTGCTGACAACAGCTGGCCTCAGTGGTA
TAGAAGTCACTCAACTGAAGCAAACACAATCGGGAAAAGTTGAAGTTATC
CTGAGGGTTGTTGCTGCTCAGTATGCCTTGACTCAAGTCCAGCAGAACTT
TGTGACACTGGTGCAAACGGGCAGGATTGGAACTCTGAATGTCATCTCCT
CATCTGCCGTCATAAAGAAAGATGTGACCCTTTCCAAGACCGCTGAGATG
ACCGTTAGCCAGGTCTGGTCAGCCGAACTAACCAACACCAGCAGCAAAGC
CTTCACCATGCTGAAGACTCAAGTGCAGGAGGCTGTGACGTCGGAGCTGG
TAGACACCATTGGTTTCCAACGTGTAAATGTGACAACATTCAAGCAGGGA
ACCAGCAACACCACTGTTGCAGTGATGCGGATGATTGTTGCCGCCTACGC
AAGCAAAGCTGTCGAGGCATCATTCCAACAAGTCGTCTCAACAGGACAAG
TTGGGATTCTAAGTCTGAACTCAACATCAGTTACGTCCACAGTAGTTGTG
ACAACTCGGTTGATGGCCGCATCCTATGCTGTGAAGAATATTCAGAACGT
TTTTGAATCAAGCGTTTCGTCTGGAAAGATTGGGACAGTCACAGTGCAGC
CGCAGTCTGCTGTTGTAACTGAAGATGTCAGTACATCGGCCACTGTGTCG
ATGTCCGTACCAGTGACCTGGTCTGTCGACTTCCAGAACAAATCATCGCA
AGCGTACCAGGATCTTAAGGTCAAAATAGAGCAAAATGTGAATGAAAAGT
TGCTGACAACAGCTGGCCTCAGTGGTATAGAAGTCACTCAACTGAAGCAA
ACACAATCGGGAAAAGTTGAAGTTATCCTGAGGGTTGTTGCTGCTCAGTA
TGCCTTGACTCAAGTCCAGCAGAACTTTGTGACACTGGTGCAAACGGGCA
GGATTGGAACTCTGAATGTCATCTCCTCATCTGCCGTCATAAAGAAAGAT
GTGACCCTTTCCAAGACCGCTGAGATGACCGTTAGCCAGGTCTGGTCAGC
CGAACTAACCAACACCAGCAGCAAAGCCTTCACCATGCTGAAGACTCAAG
TGCAGGAGGCTGTGACGTCGGAGCTGGTAGACACCATTGGTTTCCAACGT
GTAAATGTGACAACATTCAAGCAGGGAACCAGCAACACCACTGTTGCAGT
GATGCGGATGATTGTTGCCGCCTACGCAAGCAAAGCTGTCGAGGCATCAT
TCCAACAAGTCGTCTCAACAGGACAAGTTGGGATTCTAAGTCTGAACTCA
ACATCAGTTACGTCCACAGTAGTTGTGACAACTCGGTTGATGGCCGCATC
CTATGCTGTGAAGAATATTCAGAACGTTTTTGAATCAAGCGTTTCGTCTG
GAAAGATTGGGACAGTCACAGTGCAGCCGCAGTCTGCTGTTGTAACTGAA
GATGTCAGTACATCGGCCACTGTGTCGATGTCCGTACCAGTGACCTGGTC
TGTCGACTTCCAGAACAAATCATCGCAAGCGTACCAGGATCTTAAGGTCA
AAATAGAGCAAAATGTGAATGAAAAGTTGCTGACAACAGCTGGCCTCAGT
GGTATAGAAGTCACTCAACTGAAGCAAACACAATCGGGAAAAGTTGAAGT
TATCCTGAGGGTTGTTGCTGCTCAGTATGCCTTGACTCAAGTCCAGCAGA
ACTTTGTGACACTGGTGCAAACGGGCAGGATTGGAACTCTGAATGTCATC
TCCTCATCTGCCGTCATAAAGAAAGATGTGACCCTTTCCAAGACCGCTGA
GATGACCGTTAGCCAGGTCTGGTCAGCCGAACTAACCAACACCAGCAGCA
AAGCCTTCACCATGCTGAAGACTCAAGTGCAGGAGGCTGTGACGTCGGAG
CTGGTAGACACCATTGGTTTCCAACGTGTAAATGTGACAACATTCAAGCA
GGGAACCAGCAACACCACTGTTGCAGTGATGCGGATGATTGTTGCCGCCT
ACGCAAGCAAAGCTGTCGAGGCATCATTCCAACAAGTCGTCTCAACAGGA
CAAGTTGGGATTCTAAGTCTGAACTCAACATCAGTTACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000025 | genome | Sc0000025:1359790..1363105 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97015_cuf9 |
| Biotype | protein_coding |
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