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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97010_cuf2 >transcript:BL97010_cuf2-protein ID=transcript:BL97010_cuf2-protein|Name=transcript:BL97010_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=302bp
CGTLRATVSATDKCGMLNDTSGPFRTCHAKVNPGDFFSGCVFDMCAYGGN
NTQLCQSLEAYARACQRAGVQLSWRSSSLCSMSCPAHSTYKTCVKNMNCV
RGVGPTLSCTEGCQCDDGYILSGRECVKQEDCGCTDDNHYHKLNSTWGRK
DGMRCTCHLGNQITCKPARCGANFYWALQEGRYSCHCRPGRDCKDFCYRG
TGLTYRGKVSVTECGRPCQSWDAQLPHSHSAYRANFSLAGLQENFCRNPG
GEVSPWCFTVDPLVRKEVCRIPQCGEAYCASNPCMNNATCQEALESYHCT
CP Run BLAST on NCBI mRNA from alignment at Sc0000025:1316382..1320671+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97010_cuf2 ID=transcript:BL97010_cuf2|Name=transcript:BL97010_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4290bp|location=Sequence derived from alignment at Sc0000025:1316382..1320671+ (Branchiostoma lanceolatum)
CTGCGGCACCCTGCGAGCGACCGTTTCTGCGACCGACAAGTGCGGCATGC
TCAACGACACGTCGGGCCCGTTCCGCACCTGCCACGCCAAAGTCAACCCG
GGAGATTTCTTCTCCGGTTGCGTGTTCGACATGTGCGCGTACGGCGGAAA
CAACACGCAGCTCTGCCAGAGTTTGGAGGCGTACGCGCGAGCGTGTCAGC
GGGCCGGGGTGCAGTTATCGTGGAGATCTTCAAGTCTCTGCTGTAAGTCT
TTATGTTCATTTATTTATTCAATCATATTTACCACATTTGTGGAAGGATT
GTCATAACAGGTGACTATCACCTTTTCAAGATGTCAACCCAGACCAGACT
ATAAGGTTTTGGACCATCACACCGGGGCATGCCCCAACTCTTTTTCGAAA
GGTGTGGTGGGTTCTTTAACGTGAGTGGGGTGTGGCTCTCCACAAACACG
GGCATTATAGATGCATGCATCAAATCTTATTCTGCTTGCAGCATACATTA
GCAGGTTGTATAGTTTAGCTGTTTTGCTTTTGGTGTGTCTGGATGTTTAT
GTTCTCGTGTGTCAGTACTCAGTATAGTTACTTGAATCTAGAGTAGAGTA
GAGTTCAGTCTTCGGTCAGGTAGGGTGTACTTCCAGTAGATGTACTTCTA
GCAGGACAGGATGTGAGGGAGAAGATGGTGTGACCAGAGACTGATTGAAC
ATTTTACGTATGCTAGTTTCGAGTGTGTCTGAATGATTGAATATATTCTT
GTGTTTCTGTAGTTATTTAAATACAGAAGAGTGACAGGATGTGTGGGGGA
AGATGGTGTAACCAGAGACTGGCAGGAAGCGATGAAACATTTTCCGTATG
CTAAGTCATGTTCAACATAGAGTGACATGAAAGTGATGGACACATAGTGT
TCAATCAGAAACGTATTTGCATAATTGACGTGCTACAATTAAATAAGACA
AACAAGAAACATTTCATAGAGGCCTGAGATCTTCGAACTCTTCTTTGCAT
TGACACTCCTTGGGTTAACCTCATATTTCTTCTCTTCTCCTCCTAGCCAT
GTCTTGCCCTGCCCACAGCACCTACAAGACATGTGTTAAGAACATGAACT
GTGTGAGAGGTGTCGGCCCTACCCTGTCCTGTACGGAGGGGTGTCAGTGT
GACGACGGTTACATTCTGAGCGGCCGCGAATGTGTGAAGCAGGAAGACTG
TGGTTGCACTGATGACAACCACTATCATAAGGTACATTTGGTTCCACATG
TAGGGCTAGAGATTTTCCCAACATCCGCCAGTCAATCATTTGAAAGAATC
TTGTTCCTAAAGAGATTAAAAGTATGATTAAAGAATTAACATACTATTTC
TGTACATAAAGTGAAGCACTTTCCAAGGAGCTTTTGATCAGTCCTGTGGT
CTTTCTCAAAACTGAGATCGGGGCCGTTACCAACTGTCATTGTGGACATC
ACAATTCCGTTCAGGTCACATGACATAGGCTTCGGGTCACTTCAACTTGA
GAAGGATCAGAGGACTGATCGAAAAGCTTGTTGGTAAGCGCTTTACTCTG
TGTACTGAAATAGTGTGTCAGGGCTCGAAATAGTGGGTGCATGTGCACCT
GTGTGCACTCAAAATTGGAGCTGTGCACCTAATTCTTGACTGTGGGTGCA
CCGGTGCACCTAGATATTTTTGTATGCAATAGGGTAACGGTACTATTGTG
CACTAGTATACAGAATATTCTTGATATGTAGGCATCAGAAAAAGCACTAT
TATATATAACCTTTTGATGTACTTAAGTTGATGTACTACTTGTTTGAAAT
TAGCTTTAGAATGACAGATTGAAGTTCTCAATAGCTTTAGATTTGAATAT
GTTTTGCTGACTTTCAACTTTATCTTATCTGGTGCACCCAAAATTCTTCC
TGTGCACCCAATTTTTTTGGTTGGGCGCACCAGTGCAACTTTTTCCAAAA
ATGAATTTCGAGCCCTGTGTGTAAAATCTTAAAGTTTATACTACCCATTA
CCGTCACAGTCATAACCTTGACAGACTTAATTGCAATGCACTCAATGACA
TCTAATATGGCTAAGATTACAAGTATGTCAAATCATACAAGGAAGTGAGC
GTGGGTTTACTGATTCCTTACACATTTTTTTGTATTCTGCAGCTGAACAG
CACCTGGGGGCGGAAGGATGGAATGCGCTGCACCTGTCACCTTGGTAACC
AGATCACCTGTAAGCCGGCTCGGTGTGGAGCCAACTTCTACTGGGCCCTG
CAGGAGGGCAGGTACAGCTGTCACTGTCGCCCTGGACGGGACTGCAAAGG
TGGGCTCTCATTTTCAGTTCTTGAATCACATGTATAAGACAAGGATTGAT
GTGTATTTTCCGAGAACCATAGTAGAATGGAACTCGTTGTCATCAAGTAC
TGTTGGAGCATCTTCACTAAGTAGCTTTAAAGAACGGTTGCAGTCAGATA
TGCAAAGACTAGGTGTAACAGACCGTTCGGTGTAATATAACCAGCTGCTA
CTGCGCCGCGTGCCTGCAAAGCTGGTGTGTTACGACTAATGGCGATTGTA
CCGGCTATATAGATACAGATACAGCTGTATTGTTGTTTATACTTTTCTGT
GCACATGTTTGTTTTAAGTCGATCAAGTCGTACAATTCACGTCTTGAACC
TAGCCTCTGGAGGTATGGATGTGCAATAAAGATATTTCTTTCAATCTTGA
CATTCATTCATTCATTAAAGTGTTTCTGACACCTATAATACCAAAATACA
ACTGCTACAATAATCCTGATTGAATTCAATAAATTTTATTGCATGAACAT
AGACTTTTATGCCAGAAATACACCCTTCTGATGTTGTTGAACATTGAATC
TTCCAGTTCTTGATTCCTGCCTCCAGGTGATCAATCAAATTAAGTTCCAT
CGAAAATCGTGGTAGTGAACACGGCAGCCGGTTTGGACCCTGGCACAGGG
GCTTTCAAACAGTCCATTATCAAAGCATCGTGATTACATTCCATTGAAAT
ATAGTTTAATGTACACTTTGTTTCCTTCTTAGAAGAACGTATTCTGCAAG
CTGTCGTCTCTGTCGGTTTCGAACCTCCTGCCATATTCACTGTGACGTCA
CCAAAGGGATGTTAGAAAAAAAGATCAGGATACAATCCCTAAAAATGTTT
TGGTTATTCCTTCCCAGACTTCTGCTACAGAGGCACTGGTCTTACCTACC
GCGGGAAGGTCTCCGTGACGGAGTGCGGACGGCCGTGTCAGAGCTGGGAT
GCACAGCTGCCACACTCTCACAGCGCGTATAGAGCAAACTTCAGCCTTGC
TGGTCTGCAGGAGAACTTCTGTAGGAACCCTGGTGGGGAGGTCTCACCCT
GGTGTTTCACTGTAGACCCACTGGTGAGGAAAGAAGTCTGCAGGATACCT
CAATGTGGGGAAGGTGAGAAAAATTGATATCAATAATTTCTATGGTTTAT
ACATGCCATATGGTATATGCAAGATATGGAAACATGTTATAGCACCAGCT
GCGATATGTTAAAGTATGAATTGTTGAAGAAATATCTTTCATCATGGCTA
ATACAGAACAAAAACAAAATGACCAGCTCAAGTGGTCTTTATTTCATCAA
CATGAAAGCATTTCAATACCATGGAAAGAAACCAACCATTGCATTGCTGC
AGATACTTGTGATCAATTATACTTTCAGTTATCAGTTGAAAAGGAATAAA
GGAAAGCATTTCAGTACCATGGAGAGGGACTAACAGTTGTATTACTGCAA
GTATTTGTCATCAATTATACTTTAAGTTTTCAATTGTAAATAAAGGCATT
TCAGTACCATGGAAAGGAACTTAACCATTGCATTACTTCACATACTGCCT
TTTGATAAATCATACGTTTAGTTATCAATTAAAAATTAAAGCATTTCAGT
ACCATGGAAAGGTAAAGGTAAAGCAGGCATCCTCAATAGAGGTGAAGCAT
AATGCTTTTCCAAGTAGCTAGTGGTACTGCAATGCGGCTTTACCACGGCT
CATGTTTTTGGCCATTTAGCACACTGGGTCACCCTTACTCTTCTCGATAA
GTGTGTTGGGTTCTTTTTATGGAAAAAGATTGAATCAATGCACCTGTGTT
TCTGTGTATGTTACATGTATGGCTGTGTGTGTCATTGTATGTGTGTACCA
TAAGTGCAAATTATTTTGTATATCAGTACATGTACTTAAGATGTCCTCAC
CTCTCCATACAGCGTACTGTGCCAGTAATCCATGTATGAACAACGCCACC
TGTCAGGAGGCCCTGGAATCGTACCACTGCACCTGTCCCC Coding sequence (CDS) from alignment at Sc0000025:1316382..1320671+ >transcript:BL97010_cuf2 ID=transcript:BL97010_cuf2|Name=transcript:BL97010_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4530bp|location=Sequence derived from alignment at Sc0000025:1316382..1320671+ (Branchiostoma lanceolatum)
TGCGGCACCCTGCGAGCGACCGTTTCTGCGACCGACAAGTGCGGCATGCT
CAACGACACGTCGGGCCCGTTCCGCACCTGCCACGCCAAAGTCAACCCGG
GAGATTTCTTCTCCGGTTGCGTGTTCGACATGTGCGCGTACGGCGGAAAC
AACACGCAGCTCTGCCAGAGTTTGGAGGCGTACGCGCGAGCGTGTCAGCG
GGCCGGGGTGCAGTTATCGTGGAGATCTTCAAGTCTCTGCTCCATGTCTT
GCCCTGCCCACAGCACCTACAAGACATGTGTTAAGAACATGAACTGTGTG
AGAGGTGTCGGCCCTACCCTGTCCTGTACGGAGGGGTGTCAGTGTGACGA
CGGTTACATTCTGAGCGGCCGCGAATGTGTGAAGCAGGAAGACTGTGGTT
GCACTGATGACAACCACTATCATAAGCTGAACAGCACCTGGGGGCGGAAG
GATGGAATGCGCTGCACCTGTCACCTTGGTAACCAGATCACCTGTAAGCC
GGCTCGGTGTGGAGCCAACTTCTACTGGGCCCTGCAGGAGGGCAGGTACA
GCTGTCACTGTCGCCCTGGACGGGACTGCAAAGACTTCTGCTACAGAGGC
ACTGGTCTTACCTACCGCGGGAAGGTCTCCGTGACGGAGTGCGGACGGCC
GTGTCAGAGCTGGGATGCACAGCTGCCACACTCTCACAGCGCGTATAGAG
CAAACTTCAGCCTTGCTGGTCTGCAGGAGAACTTCTGTAGGAACCCTGGT
GGGGAGGTCTCACCCTGGTGTTTCACTGTAGACCCACTGGTGAGGAAAGA
AGTCTGCAGGATACCTCAATGTGGGGAAGCGTACTGTGCCAGTAATCCAT
GTATGAACAACGCCACCTGTCAGGAGGCCCTGGAATCGTACCACTGCACC
TGTCCCTGCGGCACCCTGCGAGCGACCGTTTCTGCGACCGACAAGTGCGG
CATGCTCAACGACACGTCGGGCCCGTTCCGCACCTGCCACGCCAAAGTCA
ACCCGGGAGATTTCTTCTCCGGTTGCGTGTTCGACATGTGCGCGTACGGC
GGAAACAACACGCAGCTCTGCCAGAGTTTGGAGGCGTACGCGCGAGCGTG
TCAGCGGGCCGGGGTGCAGTTATCGTGGAGATCTTCAAGTCTCTGCTCCA
TGTCTTGCCCTGCCCACAGCACCTACAAGACATGTGTTAAGAACATGAAC
TGTGTGAGAGGTGTCGGCCCTACCCTGTCCTGTACGGAGGGGTGTCAGTG
TGACGACGGTTACATTCTGAGCGGCCGCGAATGTGTGAAGCAGGAAGACT
GTGGTTGCACTGATGACAACCACTATCATAAGCTGAACAGCACCTGGGGG
CGGAAGGATGGAATGCGCTGCACCTGTCACCTTGGTAACCAGATCACCTG
TAAGCCGGCTCGGTGTGGAGCCAACTTCTACTGGGCCCTGCAGGAGGGCA
GGTACAGCTGTCACTGTCGCCCTGGACGGGACTGCAAAGACTTCTGCTAC
AGAGGCACTGGTCTTACCTACCGCGGGAAGGTCTCCGTGACGGAGTGCGG
ACGGCCGTGTCAGAGCTGGGATGCACAGCTGCCACACTCTCACAGCGCGT
ATAGAGCAAACTTCAGCCTTGCTGGTCTGCAGGAGAACTTCTGTAGGAAC
CCTGGTGGGGAGGTCTCACCCTGGTGTTTCACTGTAGACCCACTGGTGAG
GAAAGAAGTCTGCAGGATACCTCAATGTGGGGAAGCGTACTGTGCCAGTA
ATCCATGTATGAACAACGCCACCTGTCAGGAGGCCCTGGAATCGTACCAC
TGCACCTGTCCCTGCGGCACCCTGCGAGCGACCGTTTCTGCGACCGACAA
GTGCGGCATGCTCAACGACACGTCGGGCCCGTTCCGCACCTGCCACGCCA
AAGTCAACCCGGGAGATTTCTTCTCCGGTTGCGTGTTCGACATGTGCGCG
TACGGCGGAAACAACACGCAGCTCTGCCAGAGTTTGGAGGCGTACGCGCG
AGCGTGTCAGCGGGCCGGGGTGCAGTTATCGTGGAGATCTTCAAGTCTCT
GCTCCATGTCTTGCCCTGCCCACAGCACCTACAAGACATGTGTTAAGAAC
ATGAACTGTGTGAGAGGTGTCGGCCCTACCCTGTCCTGTACGGAGGGGTG
TCAGTGTGACGACGGTTACATTCTGAGCGGCCGCGAATGTGTGAAGCAGG
AAGACTGTGGTTGCACTGATGACAACCACTATCATAAGCTGAACAGCACC
TGGGGGCGGAAGGATGGAATGCGCTGCACCTGTCACCTTGGTAACCAGAT
CACCTGTAAGCCGGCTCGGTGTGGAGCCAACTTCTACTGGGCCCTGCAGG
AGGGCAGGTACAGCTGTCACTGTCGCCCTGGACGGGACTGCAAAGACTTC
TGCTACAGAGGCACTGGTCTTACCTACCGCGGGAAGGTCTCCGTGACGGA
GTGCGGACGGCCGTGTCAGAGCTGGGATGCACAGCTGCCACACTCTCACA
GCGCGTATAGAGCAAACTTCAGCCTTGCTGGTCTGCAGGAGAACTTCTGT
AGGAACCCTGGTGGGGAGGTCTCACCCTGGTGTTTCACTGTAGACCCACT
GGTGAGGAAAGAAGTCTGCAGGATACCTCAATGTGGGGAAGCGTACTGTG
CCAGTAATCCATGTATGAACAACGCCACCTGTCAGGAGGCCCTGGAATCG
TACCACTGCACCTGTCCCTGCGGCACCCTGCGAGCGACCGTTTCTGCGAC
CGACAAGTGCGGCATGCTCAACGACACGTCGGGCCCGTTCCGCACCTGCC
ACGCCAAAGTCAACCCGGGAGATTTCTTCTCCGGTTGCGTGTTCGACATG
TGCGCGTACGGCGGAAACAACACGCAGCTCTGCCAGAGTTTGGAGGCGTA
CGCGCGAGCGTGTCAGCGGGCCGGGGTGCAGTTATCGTGGAGATCTTCAA
GTCTCTGCTCCATGTCTTGCCCTGCCCACAGCACCTACAAGACATGTGTT
AAGAACATGAACTGTGTGAGAGGTGTCGGCCCTACCCTGTCCTGTACGGA
GGGGTGTCAGTGTGACGACGGTTACATTCTGAGCGGCCGCGAATGTGTGA
AGCAGGAAGACTGTGGTTGCACTGATGACAACCACTATCATAAGCTGAAC
AGCACCTGGGGGCGGAAGGATGGAATGCGCTGCACCTGTCACCTTGGTAA
CCAGATCACCTGTAAGCCGGCTCGGTGTGGAGCCAACTTCTACTGGGCCC
TGCAGGAGGGCAGGTACAGCTGTCACTGTCGCCCTGGACGGGACTGCAAA
GACTTCTGCTACAGAGGCACTGGTCTTACCTACCGCGGGAAGGTCTCCGT
GACGGAGTGCGGACGGCCGTGTCAGAGCTGGGATGCACAGCTGCCACACT
CTCACAGCGCGTATAGAGCAAACTTCAGCCTTGCTGGTCTGCAGGAGAAC
TTCTGTAGGAACCCTGGTGGGGAGGTCTCACCCTGGTGTTTCACTGTAGA
CCCACTGGTGAGGAAAGAAGTCTGCAGGATACCTCAATGTGGGGAAGCGT
ACTGTGCCAGTAATCCATGTATGAACAACGCCACCTGTCAGGAGGCCCTG
GAATCGTACCACTGCACCTGTCCCTGCGGCACCCTGCGAGCGACCGTTTC
TGCGACCGACAAGTGCGGCATGCTCAACGACACGTCGGGCCCGTTCCGCA
CCTGCCACGCCAAAGTCAACCCGGGAGATTTCTTCTCCGGTTGCGTGTTC
GACATGTGCGCGTACGGCGGAAACAACACGCAGCTCTGCCAGAGTTTGGA
GGCGTACGCGCGAGCGTGTCAGCGGGCCGGGGTGCAGTTATCGTGGAGAT
CTTCAAGTCTCTGCTCCATGTCTTGCCCTGCCCACAGCACCTACAAGACA
TGTGTTAAGAACATGAACTGTGTGAGAGGTGTCGGCCCTACCCTGTCCTG
TACGGAGGGGTGTCAGTGTGACGACGGTTACATTCTGAGCGGCCGCGAAT
GTGTGAAGCAGGAAGACTGTGGTTGCACTGATGACAACCACTATCATAAG
CTGAACAGCACCTGGGGGCGGAAGGATGGAATGCGCTGCACCTGTCACCT
TGGTAACCAGATCACCTGTAAGCCGGCTCGGTGTGGAGCCAACTTCTACT
GGGCCCTGCAGGAGGGCAGGTACAGCTGTCACTGTCGCCCTGGACGGGAC
TGCAAAGACTTCTGCTACAGAGGCACTGGTCTTACCTACCGCGGGAAGGT
CTCCGTGACGGAGTGCGGACGGCCGTGTCAGAGCTGGGATGCACAGCTGC
CACACTCTCACAGCGCGTATAGAGCAAACTTCAGCCTTGCTGGTCTGCAG
GAGAACTTCTGTAGGAACCCTGGTGGGGAGGTCTCACCCTGGTGTTTCAC
TGTAGACCCACTGGTGAGGAAAGAAGTCTGCAGGATACCTCAATGTGGGG
AAGCGTACTGTGCCAGTAATCCATGTATGAACAACGCCACCTGTCAGGAG
GCCCTGGAATCGTACCACTGCACCTGTCCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000025 | genome | Sc0000025:1316382..1320671 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97010_cuf2 |
| Biotype | protein_coding |
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