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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96989_cuf3 >transcript:BL96989_cuf3-protein ID=transcript:BL96989_cuf3-protein|Name=transcript:BL96989_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=268bp
KVDLSEPVAVTGLVVQGHPHANEWVKSFEIRYLDKSTSARNGETAGLGDR
AWRRYGEGPDGDVKTFNITPTSGDDEVRVLLEEPVETRHLRIYPIDSQGS
RSMRFEILGHHIADNLENTYLLVTDADVKFTPEAAKALLDITARDPAVGA
VCARTHPMGSGAVAWYQIFDYAIGHWLNKAANNVLGTVLCCPGCFSVYRA
KAVRDGLAEYSTHVTKANEFLIKDMGEDRWFCTLLVESGWKLEYSAVSED
STFCPETFDEFFKQRRRW Run BLAST on NCBI mRNA from alignment at Sc0000004:3435240..3437633- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96989_cuf3 ID=transcript:BL96989_cuf3|Name=transcript:BL96989_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2394bp|location=Sequence derived from alignment at Sc0000004:3435240..3437633- (Branchiostoma lanceolatum)
TAAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTTGTACAG
GGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCGCTACCT
GGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCGGGGACA
GAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAGGTACGA
TGCCAGTTTTTAACTCCTAGATAATAAAAGGCATTAGATGTTTGGTATTG
AATTCAAAGGTATTGCTGTCTTAGATAATAGTGTGATAATACACTGATAC
ATTAAGAAACAAACGGGAGGTGACATACTTAAGGCTCTGAATACTTTGTT
ACCCTCCCTAACGAAGTATTTATCACGATTCATACCTATATGTACTGACG
TCAAGTAACTTTACTTGTTACATATTGATGGCGAGCCAACAGCAGATTCC
TTACGAAAATCATCAGAATCTTTAAGCTATAAAAGCCAACAGCTGCAAGC
TGTAGGTATGGGCTACCAGTGTGAACATATGCTTTTGAACTGTGTTGTTC
ATACGGCTATTGCTATACCTTTGCAATATTAGACCTTCAACATCACCCCA
ACAAGCGGGGACGATGAGGTGAGAGTCCTGCTGGAGGAACCGGTAGAGAC
ACGTCATCTCCGGATCTACCCGATCGACTCACAAGGATCGCGCAGCATGC
GGTTCGAGATCTTAGGACACCACATCGGTACGATGCATTTTATGCTTAGT
AATTATAAAGCTTGACCGGTAGACCCGTATATAGCATTTTAACACGACGT
CATCGTTGTGCCCGCCGTCATGTTTGTGTCCGTATTTGCATTTCAGTAAG
TAATGGTCAAATACATCTGTATACTGAATGTAAAAAAAAAAAAATCTTGT
GGCAAAATAATACTGTACTTGTTATGTTTCTTGTTATAGAGAATATCTGA
AGATTAAAACTGAGAGCCATATCGTTTACAAAGTTTCATCTATGGTCAGG
TTATAATTCTAAGAACGACAAACCGAATCTTACTATTTCTTACTGGTTCC
ACCAATAACAACAACACGTAGTCCTGGCCCCATCGACGAGGTTACTTGCT
TTAAATCATTTTTACTTCCAAAACTGGAGTCATGACATGCCAAACTTTTT
TTCCTGTTTTAGCTGACAATCTGGAGAACACGTACCTCCTCGTGACCGAC
GCGGACGTCAAGTTCACCCCGGAGGCCGCCAAGGCTTTACTGGACATCAC
GGCACGTGACCCGGCGGTCGGTGCCGTCTGTGCCCGTACCCATCCCATGG
GGTCTGGAGCCGTGGCGTGGTACCAGATCTTCGACTACGCTATTGGACAC
TGGCTTAACAAGGTAGCATCTATTTCTTAACCCTGATTATACAGGTTTCG
CAGAGCAAAAAGTTGTTTTATCCTTTGGTCTACGGGCTGCCATGTTGGTT
TCTAAGGTCACGTATCGGCCATCTTGTTTTCCGTGCAAGGGTTATACACT
TCAGAACGCTATACACATAGGAGCTTTTTTTAGCAATTCTTTAAACTACC
CCTTTGGTATTTTTTCTCAAAGCTGTAGGCATTAGATAGTGGCTATTTGA
GGACGTCAAAATATCTTGGAATGTCCACAAAGGCTTGGGCTGGGGTCACT
CGAATGCAAATACGAATACCGATATGACCGCGGTCAAAGCAAAAGCGGAT
CCATACAAAGCTTAATTCAATTCAGAACATCTCGTATCATCGACAGGCGG
CCAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTG
TACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGT
CACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGT
TCTGTACTCTACTGGTAGGTATCATGCTGAAAACTTCTAGTTTTATTTGT
TGTCACATTCGGACAGAAAGAAAACCGTTGTTGCAATCAGGTATATATGT
TTATTGTTATCTGTTATCAATCTGTAAGGTTGCATAGATTTGCTTTTTTG
GTTTAAGTTCGTAATATACTATGCACTTGAAACGAAGACTCTAGATAACC
TTGCTCATACCGGATTTAGTAATCATTTATTAACATTGAAGAAGTTTACT
TTAGATACAAAAATATTGCACGGCAAACAAGGTACAAGATGTGAATCGAC
CAAGATTATTCTAATAGTCTATCCGCTTTCTGTGTTGCGCCATCTTGCAC
ATTCTCGGGTTTTAACTGATTCGCATATAAATCACACTTCCTAGGTGGAA
AGTGGCTGGAAACTCGAGTACTCTGCCGTGTCAGAAGACTCCACTTTCTG
CCCGGAGACGTTTGACGAGTTCTTCAAACAGCGCCGCCGGTGGC Coding sequence (CDS) from alignment at Sc0000004:3435240..3437633- >transcript:BL96989_cuf3 ID=transcript:BL96989_cuf3|Name=transcript:BL96989_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4020bp|location=Sequence derived from alignment at Sc0000004:3435240..3437633- (Branchiostoma lanceolatum)
AAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTTGTACAGGG
CCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCGCTACCTGG
ACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCGGGGACAGA
GCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAGACCTTCAA
CATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCCTGCTGGAGGAAC
CGGTAGAGACACGTCATCTCCGGATCTACCCGATCGACTCACAAGGATCG
CGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGCTGACAATCTGGA
GAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGTTCACCCCGGAGG
CCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCGGCGGTCGGTGCC
GTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGTGGCGTGGTACCA
GATCTTCGACTACGCTATTGGACACTGGCTTAACAAGGCGGCCAACAACG
TCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTGTACCGAGCT
AAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGTCACCAAGGC
TAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGTTCTGTACTC
TACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCCGTGTCAGAAGAC
TCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAAACAGCGCCGCCG
GTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTTGTAC
AGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCGCTAC
CTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCGGGGA
CAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAGACCT
TCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCCTGCTGGAG
GAACCGGTAGAGACACGTCATCTCCGGATCTACCCGATCGACTCACAAGG
ATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGCTGACAATC
TGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGTTCACCCCG
GAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCGGCGGTCGG
TGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGTGGCGTGGT
ACCAGATCTTCGACTACGCTATTGGACACTGGCTTAACAAGGCGGCCAAC
AACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTGTACCG
AGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGTCACCA
AGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGTTCTGT
ACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCCGTGTCAGA
AGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAAACAGCGCC
GCCGGTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTT
GTACAGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCG
CTACCTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCG
GGGACAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAG
ACCTTCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCCTGCT
GGAGGAACCGGTAGAGACACGTCATCTCCGGATCTACCCGATCGACTCAC
AAGGATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGCTGAC
AATCTGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGTTCAC
CCCGGAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCGGCGG
TCGGTGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGTGGCG
TGGTACCAGATCTTCGACTACGCTATTGGACACTGGCTTAACAAGGCGGC
CAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTGT
ACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGTC
ACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGTT
CTGTACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCCGTGT
CAGAAGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAAACAG
CGCCGCCGGTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCT
AGTTGTACAGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGA
TCCGCTACCTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGA
CTCGGGGACAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGT
CAAGACCTTCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCC
TGCTGGAGGAACCGGTAGAGACACGTCATCTCCGGATCTACCCGATCGAC
TCACAAGGATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGC
TGACAATCTGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGT
TCACCCCGGAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCG
GCGGTCGGTGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGT
GGCGTGGTACCAGATCTTCGACTACGCTATTGGACACTGGCTTAACAAGG
CGGCCAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCG
GTGTACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCA
CGTCACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGT
GGTTCTGTACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCC
GTGTCAGAAGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAA
ACAGCGCCGCCGGTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTG
GGCTAGTTGTACAGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTT
GAGATCCGCTACCTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGC
CGGACTCGGGGACAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTG
ACGTCAAGACCTTCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGA
GTCCTGCTGGAGGAACCGGTAGAGACACGTCATCTCCGGATCTACCCGAT
CGACTCACAAGGATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACA
TCGCTGACAATCTGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTC
AAGTTCACCCCGGAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGA
CCCGGCGGTCGGTGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAG
CCGTGGCGTGGTACCAGATCTTCGACTACGCTATTGGACACTGGCTTAAC
AAGGCGGCCAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTT
CTCGGTGTACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCA
CCCACGTCACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGAC
AGGTGGTTCTGTACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTC
TGCCGTGTCAGAAGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCT
TCAAACAGCGCCGCCGGTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:3435240..3437633 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96989_cuf3 |
| Biotype | protein_coding |
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