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transcript:BL96989_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96989_cuf3
Unique Nametranscript:BL96989_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96989_cuf3

>transcript:BL96989_cuf3-protein ID=transcript:BL96989_cuf3-protein|Name=transcript:BL96989_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=268bp
KVDLSEPVAVTGLVVQGHPHANEWVKSFEIRYLDKSTSARNGETAGLGDR
AWRRYGEGPDGDVKTFNITPTSGDDEVRVLLEEPVETRHLRIYPIDSQGS
RSMRFEILGHHIADNLENTYLLVTDADVKFTPEAAKALLDITARDPAVGA
VCARTHPMGSGAVAWYQIFDYAIGHWLNKAANNVLGTVLCCPGCFSVYRA
KAVRDGLAEYSTHVTKANEFLIKDMGEDRWFCTLLVESGWKLEYSAVSED
STFCPETFDEFFKQRRRW
Run BLAST on NCBI

mRNA from alignment at Sc0000004:3435240..3437633-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96989_cuf3 ID=transcript:BL96989_cuf3|Name=transcript:BL96989_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2394bp|location=Sequence derived from alignment at Sc0000004:3435240..3437633- (Branchiostoma lanceolatum)
TAAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTTGTACAG GGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCGCTACCT GGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCGGGGACA GAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAGGTACGA TGCCAGTTTTTAACTCCTAGATAATAAAAGGCATTAGATGTTTGGTATTG AATTCAAAGGTATTGCTGTCTTAGATAATAGTGTGATAATACACTGATAC ATTAAGAAACAAACGGGAGGTGACATACTTAAGGCTCTGAATACTTTGTT ACCCTCCCTAACGAAGTATTTATCACGATTCATACCTATATGTACTGACG TCAAGTAACTTTACTTGTTACATATTGATGGCGAGCCAACAGCAGATTCC TTACGAAAATCATCAGAATCTTTAAGCTATAAAAGCCAACAGCTGCAAGC TGTAGGTATGGGCTACCAGTGTGAACATATGCTTTTGAACTGTGTTGTTC ATACGGCTATTGCTATACCTTTGCAATATTAGACCTTCAACATCACCCCA ACAAGCGGGGACGATGAGGTGAGAGTCCTGCTGGAGGAACCGGTAGAGAC ACGTCATCTCCGGATCTACCCGATCGACTCACAAGGATCGCGCAGCATGC GGTTCGAGATCTTAGGACACCACATCGGTACGATGCATTTTATGCTTAGT AATTATAAAGCTTGACCGGTAGACCCGTATATAGCATTTTAACACGACGT CATCGTTGTGCCCGCCGTCATGTTTGTGTCCGTATTTGCATTTCAGTAAG TAATGGTCAAATACATCTGTATACTGAATGTAAAAAAAAAAAAATCTTGT GGCAAAATAATACTGTACTTGTTATGTTTCTTGTTATAGAGAATATCTGA AGATTAAAACTGAGAGCCATATCGTTTACAAAGTTTCATCTATGGTCAGG TTATAATTCTAAGAACGACAAACCGAATCTTACTATTTCTTACTGGTTCC ACCAATAACAACAACACGTAGTCCTGGCCCCATCGACGAGGTTACTTGCT TTAAATCATTTTTACTTCCAAAACTGGAGTCATGACATGCCAAACTTTTT TTCCTGTTTTAGCTGACAATCTGGAGAACACGTACCTCCTCGTGACCGAC GCGGACGTCAAGTTCACCCCGGAGGCCGCCAAGGCTTTACTGGACATCAC GGCACGTGACCCGGCGGTCGGTGCCGTCTGTGCCCGTACCCATCCCATGG GGTCTGGAGCCGTGGCGTGGTACCAGATCTTCGACTACGCTATTGGACAC TGGCTTAACAAGGTAGCATCTATTTCTTAACCCTGATTATACAGGTTTCG CAGAGCAAAAAGTTGTTTTATCCTTTGGTCTACGGGCTGCCATGTTGGTT TCTAAGGTCACGTATCGGCCATCTTGTTTTCCGTGCAAGGGTTATACACT TCAGAACGCTATACACATAGGAGCTTTTTTTAGCAATTCTTTAAACTACC CCTTTGGTATTTTTTCTCAAAGCTGTAGGCATTAGATAGTGGCTATTTGA GGACGTCAAAATATCTTGGAATGTCCACAAAGGCTTGGGCTGGGGTCACT CGAATGCAAATACGAATACCGATATGACCGCGGTCAAAGCAAAAGCGGAT CCATACAAAGCTTAATTCAATTCAGAACATCTCGTATCATCGACAGGCGG CCAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTG TACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGT CACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGT TCTGTACTCTACTGGTAGGTATCATGCTGAAAACTTCTAGTTTTATTTGT TGTCACATTCGGACAGAAAGAAAACCGTTGTTGCAATCAGGTATATATGT TTATTGTTATCTGTTATCAATCTGTAAGGTTGCATAGATTTGCTTTTTTG GTTTAAGTTCGTAATATACTATGCACTTGAAACGAAGACTCTAGATAACC TTGCTCATACCGGATTTAGTAATCATTTATTAACATTGAAGAAGTTTACT TTAGATACAAAAATATTGCACGGCAAACAAGGTACAAGATGTGAATCGAC CAAGATTATTCTAATAGTCTATCCGCTTTCTGTGTTGCGCCATCTTGCAC ATTCTCGGGTTTTAACTGATTCGCATATAAATCACACTTCCTAGGTGGAA AGTGGCTGGAAACTCGAGTACTCTGCCGTGTCAGAAGACTCCACTTTCTG CCCGGAGACGTTTGACGAGTTCTTCAAACAGCGCCGCCGGTGGC

Coding sequence (CDS) from alignment at Sc0000004:3435240..3437633-

>transcript:BL96989_cuf3 ID=transcript:BL96989_cuf3|Name=transcript:BL96989_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4020bp|location=Sequence derived from alignment at Sc0000004:3435240..3437633- (Branchiostoma lanceolatum)
AAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTTGTACAGGG
CCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCGCTACCTGG
ACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCGGGGACAGA
GCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAGACCTTCAA
CATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCCTGCTGGAGGAAC
CGGTAGAGACACGTCATCTCCGGATCTACCCGATCGACTCACAAGGATCG
CGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGCTGACAATCTGGA
GAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGTTCACCCCGGAGG
CCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCGGCGGTCGGTGCC
GTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGTGGCGTGGTACCA
GATCTTCGACTACGCTATTGGACACTGGCTTAACAAGGCGGCCAACAACG
TCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTGTACCGAGCT
AAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGTCACCAAGGC
TAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGTTCTGTACTC
TACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCCGTGTCAGAAGAC
TCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAAACAGCGCCGCCG
GTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTTGTAC
AGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCGCTAC
CTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCGGGGA
CAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAGACCT
TCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCCTGCTGGAG
GAACCGGTAGAGACACGTCATCTCCGGATCTACCCGATCGACTCACAAGG
ATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGCTGACAATC
TGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGTTCACCCCG
GAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCGGCGGTCGG
TGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGTGGCGTGGT
ACCAGATCTTCGACTACGCTATTGGACACTGGCTTAACAAGGCGGCCAAC
AACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTGTACCG
AGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGTCACCA
AGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGTTCTGT
ACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCCGTGTCAGA
AGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAAACAGCGCC
GCCGGTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCTAGTT
GTACAGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGATCCG
CTACCTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGACTCG
GGGACAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGTCAAG
ACCTTCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCCTGCT
GGAGGAACCGGTAGAGACACGTCATCTCCGGATCTACCCGATCGACTCAC
AAGGATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGCTGAC
AATCTGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGTTCAC
CCCGGAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCGGCGG
TCGGTGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGTGGCG
TGGTACCAGATCTTCGACTACGCTATTGGACACTGGCTTAACAAGGCGGC
CAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCGGTGT
ACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCACGTC
ACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGTGGTT
CTGTACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCCGTGT
CAGAAGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAAACAG
CGCCGCCGGTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTGGGCT
AGTTGTACAGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTTGAGA
TCCGCTACCTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGCCGGA
CTCGGGGACAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTGACGT
CAAGACCTTCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGAGTCC
TGCTGGAGGAACCGGTAGAGACACGTCATCTCCGGATCTACCCGATCGAC
TCACAAGGATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACATCGC
TGACAATCTGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTCAAGT
TCACCCCGGAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGACCCG
GCGGTCGGTGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAGCCGT
GGCGTGGTACCAGATCTTCGACTACGCTATTGGACACTGGCTTAACAAGG
CGGCCAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTTCTCG
GTGTACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCACCCA
CGTCACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGACAGGT
GGTTCTGTACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTCTGCC
GTGTCAGAAGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCTTCAA
ACAGCGCCGCCGGTGGAAGGTTGACCTAAGTGAGCCGGTGGCTGTGACTG
GGCTAGTTGTACAGGGCCATCCGCATGCCAACGAATGGGTGAAGAGTTTT
GAGATCCGCTACCTGGACAAGTCCACGTCTGCACGAAACGGCGAGACGGC
CGGACTCGGGGACAGAGCTTGGCGCCGGTATGGAGAGGGTCCTGACGGTG
ACGTCAAGACCTTCAACATCACCCCAACAAGCGGGGACGATGAGGTGAGA
GTCCTGCTGGAGGAACCGGTAGAGACACGTCATCTCCGGATCTACCCGAT
CGACTCACAAGGATCGCGCAGCATGCGGTTCGAGATCTTAGGACACCACA
TCGCTGACAATCTGGAGAACACGTACCTCCTCGTGACCGACGCGGACGTC
AAGTTCACCCCGGAGGCCGCCAAGGCTTTACTGGACATCACGGCACGTGA
CCCGGCGGTCGGTGCCGTCTGTGCCCGTACCCATCCCATGGGGTCTGGAG
CCGTGGCGTGGTACCAGATCTTCGACTACGCTATTGGACACTGGCTTAAC
AAGGCGGCCAACAACGTCCTTGGCACGGTACTGTGCTGTCCTGGCTGCTT
CTCGGTGTACCGAGCTAAAGCTGTCCGTGACGGGCTGGCGGAATATTCCA
CCCACGTCACCAAGGCTAACGAGTTCCTCATCAAGGATATGGGCGAGGAC
AGGTGGTTCTGTACTCTACTGGTGGAAAGTGGCTGGAAACTCGAGTACTC
TGCCGTGTCAGAAGACTCCACTTTCTGCCCGGAGACGTTTGACGAGTTCT
TCAAACAGCGCCGCCGGTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96989gene:BL96989Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96989_cuf3transcript:BL96989_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96989_cuf3-E1BL96989_cuf3-E1-1564476830-52232Branchiostoma lanceolatumexon
BL96989_cuf3-E2BL96989_cuf3-E2-1564476830-52229Branchiostoma lanceolatumexon
BL96989_cuf3-E3BL96989_cuf3-E3-1564476830-52227Branchiostoma lanceolatumexon
BL96989_cuf3-E4BL96989_cuf3-E4-1564476830-52225Branchiostoma lanceolatumexon
BL96989_cuf3-E5BL96989_cuf3-E5-1564476830-52223Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:3435240..3437633 -
Properties
Property NameValue
Transcript idBL96989_cuf3
Biotypeprotein_coding