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transcript:BL96987_cuf8 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96987_cuf8
Unique Nametranscript:BL96987_cuf8
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96987_cuf8

>transcript:BL96987_cuf8-protein ID=transcript:BL96987_cuf8-protein|Name=transcript:BL96987_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
NGGTCTDGVDSHSCQCAAGFGGVNCETNIDECEPDPCQNGATCTDGTGTY
TCECAPGFEGVNCETNIDDCILGPCLNGGDCIDGVDSYTCQCSVGFMGEN
CETSR
Run BLAST on NCBI

mRNA from alignment at Sc0000004:3647815..3649780+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96987_cuf8 ID=transcript:BL96987_cuf8|Name=transcript:BL96987_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=1966bp|location=Sequence derived from alignment at Sc0000004:3647815..3649780+ (Branchiostoma lanceolatum)
AATGGGGGTACCTGCACTGACGGCGTGGATTCACACTCTTGTCAATGTGC AGCAGGATTCGGAGGCGTCAACTGTGAAACAAGTACGTGGTATTTTGCAA TTTCTCTCATTAGTATACAGAATATACATATCAAACAACGTCTACAGAAA AATGATTTAAAAGGTCTACCAAAATTTCGATGATCATTCAGGTGCCTACC AGGGATGGCAACCAGGGAAACACCAGAATAGAAAACATCACATCTACCGA GGCACTACTCTCCCTTCGGCAGCATACGGATCTGAGTGTGTGACTGAATT AAAAACAAATTGTATTTTATATGTTGATATATCTTTGTATTCGATCCAGA CATTGACGAATGTGAGCCTGACCCTTGTCAGAACGGAGCTACATGTACCG ATGGTACCGGTACGTACACGTGTGAGTGCGCACCAGGGTTTGAAGGCGTC AACTGTGAAACAAGTACGTGCCGTGATTTCCTTTTTAAATCTTACAACGC ACGAATGATATATGAAAATCAATAGCAACTAGAAAGGCAACATTTGCGAG CAAATACAGCATGTTTAGCCATACTTCTCGCCATGCAAAAAATGGACTCT CCCAAAATAACAATGGACCATTCTAAAATACTTGCACTAAAAAAATGAAT CACCCCAGTCCAAAATTGAGTCTTCCAGTAGCACCTCAACACAATATGGA CCAGTCCACAACCATATCCACTTATTGATTAACAAATACACTTCTGCTAA CAAATGGACTTTTTCATAATCATTCCAGCTCAAAATTGAAAGAAATAATT AAAGAATCCTCCCCTTGCAAGAATGGGATATTCCGTGCCATTTCCATGTA AACCAGTCGAAAAATATCCGCTGAAAATTACACTCTTGCGCATAATCAAC CCAGTTCAAAATTGANCCATGTAATCACATGTCCTAGGAATTCCCATACC ATATTTGGCATGAATACTAGCACACCTGCGCCAGGAATGCAAGATAATTA GATTAACCCAATTGACCAATCAGGTGGTCGCAAGGCTCACAGGCATGCAA GGCCAGGTGCAAGGCACTTGGGGTCAATGACCTGTAGGTCATATGTAGTA TTGAAAGTGACAGAAGTGGCAAATATTGTCAAGAAAGCCCAAAATAAATC GTTTTGAATATATGTATGCCAAAAATGGGAATGTAGTCCTTTAAATATTT GTTCAAGCCACATATACAGCAAATTTCAGGTCATTCGGTTGAAATACCAG GGCGCAGGAGGCCAAGATATGCTAAAAATAGCCTAAAAACCTCAATAAAA TCACTTTCAAGGTCAATATCAAAAAAAGGAAAAGAACGCACATTGGTTTT TGCCTACATTACCTCTGTACCAAATTTCAGGTCATTTGGTCAAAAAATGA CAGAGATGAATCGATTTGAAGATTTGACAGGAGGAGAAGAAGAAGAAGAA GAAGAAGAAGAAGAAACATGAGTAAAAACAATATGTTTAGCCATACTAGG TATGGCTAAACATAACAAGTTACTCCTATATGCTAGTAAGACCATGGAAA TGCCATAGAAAATTATAATTTCGGAAATAGATATTTCAATGATTTATGTA TACCTTTTATCGAATAGCGTTTGCCTGAAATAATTTTTATTCAACTTCGG TATTTTAATGCGGAGTTGTGGTCTGTTTCTTTGCTACCCAGATATAGATG ATTGTATCCTTGGACCTTGCCTCAACGGAGGTGACTGTATCGACGGTGTG GATTCTTACACGTGCCAGTGTTCAGTTGGATTTATGGGGGAAAACTGTGA AACAAGTAGGTGACTTTTTGTACCGACAAATTTACCTTCCAAGAGCATAC AAAGCCTACGTCAAAGAAAACATAGTGCCATGGTCTCATTGTACTTCATA TATCAACGCAGGACGAGTAACGAAAGAAAGATAACTTAAAGTCAGTTTTT CACAATATGAATTTAC

Coding sequence (CDS) from alignment at Sc0000004:3647815..3649780+

>transcript:BL96987_cuf8 ID=transcript:BL96987_cuf8|Name=transcript:BL96987_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=954bp|location=Sequence derived from alignment at Sc0000004:3647815..3649780+ (Branchiostoma lanceolatum)
AATGGGGGTACCTGCACTGACGGCGTGGATTCACACTCTTGTCAATGTGC
AGCAGGATTCGGAGGCGTCAACTGTGAAACAAACATTGACGAATGTGAGC
CTGACCCTTGTCAGAACGGAGCTACATGTACCGATGGTACCGGTACGTAC
ACGTGTGAGTGCGCACCAGGGTTTGAAGGCGTCAACTGTGAAACAAATAT
AGATGATTGTATCCTTGGACCTTGCCTCAACGGAGGTGACTGTATCGACG
GTGTGGATTCTTACACGTGCCAGTGTTCAGTTGGATTTATGGGGGAAAAC
TGTGAAACAAGTAGGTGAAATGGGGGTACCTGCACTGACGGCGTGGATTC
ACACTCTTGTCAATGTGCAGCAGGATTCGGAGGCGTCAACTGTGAAACAA
ACATTGACGAATGTGAGCCTGACCCTTGTCAGAACGGAGCTACATGTACC
GATGGTACCGGTACGTACACGTGTGAGTGCGCACCAGGGTTTGAAGGCGT
CAACTGTGAAACAAATATAGATGATTGTATCCTTGGACCTTGCCTCAACG
GAGGTGACTGTATCGACGGTGTGGATTCTTACACGTGCCAGTGTTCAGTT
GGATTTATGGGGGAAAACTGTGAAACAAGTAGGTGAAATGGGGGTACCTG
CACTGACGGCGTGGATTCACACTCTTGTCAATGTGCAGCAGGATTCGGAG
GCGTCAACTGTGAAACAAACATTGACGAATGTGAGCCTGACCCTTGTCAG
AACGGAGCTACATGTACCGATGGTACCGGTACGTACACGTGTGAGTGCGC
ACCAGGGTTTGAAGGCGTCAACTGTGAAACAAATATAGATGATTGTATCC
TTGGACCTTGCCTCAACGGAGGTGACTGTATCGACGGTGTGGATTCTTAC
ACGTGCCAGTGTTCAGTTGGATTTATGGGGGAAAACTGTGAAACAAGTAG
GTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96987gene:BL96987Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96987_cuf8-E1BL96987_cuf8-E1-1564476830-52575Branchiostoma lanceolatumexon
BL96987_cuf8-E2BL96987_cuf8-E2-1564476830-52577Branchiostoma lanceolatumexon
BL96987_cuf8-E3BL96987_cuf8-E3-1564476830-52580Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96987_cuf8transcript:BL96987_cuf8-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:3647815..3649780 +
Properties
Property NameValue
Transcript idBL96987_cuf8
Biotypeprotein_coding