transcript:BL96981_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96981_cuf1
Unique Nametranscript:BL96981_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96981_cuf1

>transcript:BL96981_cuf1-protein ID=transcript:BL96981_cuf1-protein|Name=transcript:BL96981_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=165bp
TSDLTGSHVVSDQPVSVMSGSRCTNVPEGITACDHLVEHIPPILTWGLKF
VTVPLAMRKGGDIFRIIASEDDTEVDVAGLNSRTLDAGEWWELDIPSDEY
RLVTSSAPIMLVQYSKGKDADGVNSDPFMMYVPPNEQFAADYTFGTVDSP
SSPYTSFVNVIINGA
Run BLAST on NCBI

mRNA from alignment at Sc0000004:3617467..3618950+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96981_cuf1 ID=transcript:BL96981_cuf1|Name=transcript:BL96981_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1484bp|location=Sequence derived from alignment at Sc0000004:3617467..3618950+ (Branchiostoma lanceolatum)
ACATCCGATCTGACGGGATCCCACGTGGTTTCTGACCAACCGGTGTCCGT TATGTCTGGAAGCAGGTTCGTTTATTTGTTTGTTTGCTAGTTTGTTTCTA ACATAACCTGTTAATCCCGTTAGTAACCCCGTTTAGGCGCAACACACCAG TTTTGATGATGACAGTGATGTAAGTTTTTGTCCACTCGTACTGGGGAGGA CCGCTACCCTTATCAATGTGTGGTGGGTTTTGTAACGTGTTTATAGTGTG ACCATCCTCAAACACCGTGCCACCTTTTTTTTCTTGAACCCAAGGTGGTA CTCATCACAGTAACTACTAGAGGTAGTTTTACCTGAATTGAGTAGGGAAA TAGTGGTAAACTGCTTTTGTTGAAAGGCACACCATTTCGGCCAGGATTCG AACGAAGAACCTGTGGATTCCACGTCAGCTACCCTAACCGCAAAACCACC TTGCCACCAACAGGTGTACCAACGTGCCGGAGGGGATCACTGCCTGCGAC CACCTGGTGGAACACATTCCTCCCATCCTCACCTGGGGTCTCAAGTTCGT CACGGTCCCCCTGGCGATGCGAAAAGGCGGGGACATCTTCCGTATCATCG CGTCCGAGGACGACACGGAGGTGGACGTGGCAGGTAAAGGCAGCATGTCT CCCGTCACAAGTATGCAAATAAGTAGACAGTCAGAAGTATGCAAAACAAT TATATGCTTAACAGAGACTACAACCTTTGTGATAGTCAAATGTCTAGGCG TTTCATAATCATCATAGCCTGGTCCCAGTCTCTAGGGGTCGGCTTAGTGG TGATTTACCGGGCCCAGTCAGTTTCTGATGGCCTTTCTACCTCTGGCTGC CACCCTACTTCCGCTACACCCTACTTTGCCGCCGACCCAAGAGCTAATTA ATCCAATGCCGTAAACAACACCCCGAGCGGGCTAAGCTTTCTGGGCGGGC GGGGTCACTCACAGTGCCGTAGAAATATCGGGGAGCCATCGAGGGTATGG TTTCCAGGCTATAATCATCATCATCATTATCTTCGCCGCTTTCAGTTCAC ACTGAAGCGGGCTGTCATTGTTTCTTCACATTGATTTGTTTGCTGCTGTC CGCCGCACCCTCTCCCATTTGCAGCCCATCTAGGCGTATACAGCCATCCC ATTCACATTTCCATCCGTTTTGGCTAGTTCTTCGCCATCCTTCCTCACGT CTATCCGTTCTTATCATGTGGCAGGCCTAAACAGCCGTACGCTGGACGCC GGCGAGTGGTGGGAACTCGACATTCCGTCAGACGAGTACCGCCTAGTGAC GTCATCCGCTCCGATCATGCTGGTTCAGTACAGCAAAGGGAAGGACGCGG ACGGCGTCAACAGCGATCCGTTCATGATGTACGTGCCGCCCAACGAGCAG TTTGCCGCCGACTACACCTTCGGTACCGTGGACTCGCCGTCGTCCCCATA CACCAGCTTCGTCAACGTCATCATTAACGGCGCG

Coding sequence (CDS) from alignment at Sc0000004:3617467..3618950+

>transcript:BL96981_cuf1 ID=transcript:BL96981_cuf1|Name=transcript:BL96981_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1485bp|location=Sequence derived from alignment at Sc0000004:3617467..3618950+ (Branchiostoma lanceolatum)
ACATCCGATCTGACGGGATCCCACGTGGTTTCTGACCAACCGGTGTCCGT
TATGTCTGGAAGCAGGTGTACCAACGTGCCGGAGGGGATCACTGCCTGCG
ACCACCTGGTGGAACACATTCCTCCCATCCTCACCTGGGGTCTCAAGTTC
GTCACGGTCCCCCTGGCGATGCGAAAAGGCGGGGACATCTTCCGTATCAT
CGCGTCCGAGGACGACACGGAGGTGGACGTGGCAGGCCTAAACAGCCGTA
CGCTGGACGCCGGCGAGTGGTGGGAACTCGACATTCCGTCAGACGAGTAC
CGCCTAGTGACGTCATCCGCTCCGATCATGCTGGTTCAGTACAGCAAAGG
GAAGGACGCGGACGGCGTCAACAGCGATCCGTTCATGATGTACGTGCCGC
CCAACGAGCAGTTTGCCGCCGACTACACCTTCGGTACCGTGGACTCGCCG
TCGTCCCCATACACCAGCTTCGTCAACGTCATCATTAACGGCGCGACATC
CGATCTGACGGGATCCCACGTGGTTTCTGACCAACCGGTGTCCGTTATGT
CTGGAAGCAGGTGTACCAACGTGCCGGAGGGGATCACTGCCTGCGACCAC
CTGGTGGAACACATTCCTCCCATCCTCACCTGGGGTCTCAAGTTCGTCAC
GGTCCCCCTGGCGATGCGAAAAGGCGGGGACATCTTCCGTATCATCGCGT
CCGAGGACGACACGGAGGTGGACGTGGCAGGCCTAAACAGCCGTACGCTG
GACGCCGGCGAGTGGTGGGAACTCGACATTCCGTCAGACGAGTACCGCCT
AGTGACGTCATCCGCTCCGATCATGCTGGTTCAGTACAGCAAAGGGAAGG
ACGCGGACGGCGTCAACAGCGATCCGTTCATGATGTACGTGCCGCCCAAC
GAGCAGTTTGCCGCCGACTACACCTTCGGTACCGTGGACTCGCCGTCGTC
CCCATACACCAGCTTCGTCAACGTCATCATTAACGGCGCGACATCCGATC
TGACGGGATCCCACGTGGTTTCTGACCAACCGGTGTCCGTTATGTCTGGA
AGCAGGTGTACCAACGTGCCGGAGGGGATCACTGCCTGCGACCACCTGGT
GGAACACATTCCTCCCATCCTCACCTGGGGTCTCAAGTTCGTCACGGTCC
CCCTGGCGATGCGAAAAGGCGGGGACATCTTCCGTATCATCGCGTCCGAG
GACGACACGGAGGTGGACGTGGCAGGCCTAAACAGCCGTACGCTGGACGC
CGGCGAGTGGTGGGAACTCGACATTCCGTCAGACGAGTACCGCCTAGTGA
CGTCATCCGCTCCGATCATGCTGGTTCAGTACAGCAAAGGGAAGGACGCG
GACGGCGTCAACAGCGATCCGTTCATGATGTACGTGCCGCCCAACGAGCA
GTTTGCCGCCGACTACACCTTCGGTACCGTGGACTCGCCGTCGTCCCCAT
ACACCAGCTTCGTCAACGTCATCATTAACGGCGCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96981gene:BL96981Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96981_cuf1-E1BL96981_cuf1-E1-1564476830-52488Branchiostoma lanceolatumexon
BL96981_cuf1-E2BL96981_cuf1-E2-1564476830-52490Branchiostoma lanceolatumexon
BL96981_cuf1-E3BL96981_cuf1-E3-1564476830-52492Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96981_cuf1transcript:BL96981_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:3617467..3618950 +
Properties
Property NameValue
Transcript idBL96981_cuf1
Biotypeprotein_coding