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transcript:BL96980_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96980_cuf0
Unique Nametranscript:BL96980_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96980_cuf0

>transcript:BL96980_cuf0-protein ID=transcript:BL96980_cuf0-protein|Name=transcript:BL96980_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=227bp
LGRPAFWLLLTACLATGHGYDILDEIFGVDRPASRVKRQEPDSNQCLSNP
CQHDGICLDANGKYTCLCKAGWKGTNCDQVLTRPDNKGKEFMFGFLQNFD
DAPTLEVFITSSSETPVAVTVSAPGVDYAHQLTVSNAAIEIVNLPSTLQL
IESEKAQKGIFISAESEVIVYGVNKYRATTDGFLALPVDVLGTEYFVASY
TPISSTLYSEFGIWGVFDQTKVTVTLS
Run BLAST on NCBI

mRNA from alignment at Sc0000004:3614841..3617355+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96980_cuf0 ID=transcript:BL96980_cuf0|Name=transcript:BL96980_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2515bp|location=Sequence derived from alignment at Sc0000004:3614841..3617355+ (Branchiostoma lanceolatum)
GACTCGGCCGGCCGGCCTTCTGGCTGCTGCTCACCGCGTGTCTGGCGACA GGACACGGGTATGACATCCTGGACGAGATCTTCGGAGTGGACCGACGTAA GTTCAACTTACATGTGCAGATAGTTCACACAAAAATGGTGTTTCTATCCT ACTCCGTAGTTTTCATTCTGTGCATTCTATGTATTGTTAATCCGCCGTTC TCTATTAAGTTGCTTTGACCCGAAGCCAACGTCAATTCGCATTTGTGAAA AAGATTGAATATCAGGCGACCTCCAAAAAGAAATGACATAACGCTTAGAG CGTTTTCAGTACAGATGTTGGTGTCTTCGATTTTGATTCAATGGAAGATG TGATATAGCAAAGATATAGAGGTTTTTGTTTGGTATATGTTCTGTGTCTC TGGTCATTTGTTCAGCCAACCTGACCACTTACAACTCATACCGAAGGCAA CTTTTTCAATGCCAAACTTTTCTTTTCTCACGCTGTCATTAGCTTAATTT GTTGTGCCCAGAATATGTCATCAAATCATATAATCAAATCGATGTGGCCT TAATGTTGAAGACTGACAATGTCGTGCCGTGTTTTAGTTACAGTATCTTA TTGCTGAGTACATTTTCTATTCCGTGGTGTGTAGCCGCTAGCAGAGTGAA GCGCCAGGAACCGGACAGTAACCAATGTCTCAGCAACCCCTGTCAGCACG ACGGCATCTGCCTGGACGCGAACGGCAAGTACACATGTCTGTGCAAGGCT GGCTGGAAAGGGACCAACTGTGATCAAGGTAGGTTTCATTCAATTATATT TGGCACTTTTTTTTCCACAAACCTAGCTCAACTGATAGCTTGGAACGCGT GCTGAAGCATATCAATACCCCCATTTCACTAGGACGGCGCTCTCGCCGCG CGCTCTCTGCGACCTAAGATTTAACAGAGCGCTCAGCGAATTTCAAAGAT GAAAGAAACGAATCTTTTTACGCTTAAGTGTTTTGTTGTCTTTTTGGCCG TATCTTTGCATTTTGCTTGATATTCTAATTATGAAATCAACTATAAGACA AATCCGATTTTGGTCGCAGCGACATGCCATCGCCGTCTAGTGGAATGGGG GCCTTAAGAACTAGCACTGCTGATGAGACAATACCTCAGTATGTTTTAGA GTTTATGGTACATCTCACTTATATCTAAGATATCGATTTATCATTATCAT CATCATCGTCGCCACTTTGTATTTCGATTTATATCTAACTTAGAATACAA AAAGAAGACACCTAAAAGACAAATGCTCCATTGCTACAAGATAATTTTCT ATTCTTATGTCAAGTTTGTTTGTTCGTTTGTTTGTTTGTTTGGTAGTTTG TTTGAACCTTTGTTTATTCATGAGAAGTTCAAATTGGCATGCATGCCGGT TTTTTATTGAGGTCATGAGGAAGAAGTTAGGGTCAGATAGCATGTAACAG AGATACAGCAGACATCATTGTGATATTTATTTTTGTCGCAGTCCTGACTA GACCAGACAACAAGGGGAAATCCTTGAAAAACCTTGAAGGGTTCATGTTT CCCCTGCATGTTTTTCCTCACCATTTGCAACAACATGTACTTGATTTTAT GTGCAAATAAAAAAACAACAATATTCTTATTTCAAGTTTGTGATATTTGT TTTCTTGCAGTCCTGACAAGACCAGACAACAAGGGGAAAGAGTTCATGTT CGGCTTTCTGCAGAATTTTGACGACGCGCCGACGCTGGAGGTGTTCATCA CCAGCTCGAGCGAGACGCCGGTAGCGGTCACCGTCTCCGCCCCGGGGGTG GACTATGCCCACCAGCTCACCGTGTCAAACGCAGCGATTGAGGTAGACCT TGTGGAAAATTGTTGCCAGCTTTAATTTTCAGTTAATGAAACAAGCATAT GCTGAGCCCACGTTGCTGCCCATGACTTGTATTCGAAACGACCATAGCCC AAGCGTACACGTCATTAATTTTTTGTATAATATTTAATTGGCAGCTTTTT ATATTGTCTCCTGATTTGTCTCTTATTGACACTTAGTCTTTAACAAAGCC CCAACAAATTACAAAACAAATGTACACTTTAGCTAAATCAGTACTTTAAA TCTAAAAAAAATATCAAACCCAACGACATGAAAGTGAGCATCTTCCCGCT TCATTGAATGAAAACACTACATCCCACATGTACATCTGTCAAGTTTTGCC CAAAGCTTTCTTTTCCAGCAAATGATTCTCATCATAATCATTCCTGCATT TCAGATCGTGAACCTCCCATCAACATTGCAGCTGATTGAAAGCGAGAAGG CTCAAAAGGGTATCTTCATAAGCGCGGAGTCTGAGGTCATAGTTTACGGC GTCAACAAGTACAGGGCCACCACGGATGGCTTTCTCGCCCTCCCTGTCGA CGTTCTGGGCACAGAATATTTCGTGGCCTCGTACACGCCGATTTCGTCCA CGCTCTATTCTGAATTTGGCATTTGGGGAGTTTTCGATCAAACCAAAGTG ACGGTCACCTTGTCG

Coding sequence (CDS) from alignment at Sc0000004:3614841..3617355+

>transcript:BL96980_cuf0 ID=transcript:BL96980_cuf0|Name=transcript:BL96980_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2724bp|location=Sequence derived from alignment at Sc0000004:3614841..3617355+ (Branchiostoma lanceolatum)
CTCGGCCGGCCGGCCTTCTGGCTGCTGCTCACCGCGTGTCTGGCGACAGG
ACACGGGTATGACATCCTGGACGAGATCTTCGGAGTGGACCGACCCGCTA
GCAGAGTGAAGCGCCAGGAACCGGACAGTAACCAATGTCTCAGCAACCCC
TGTCAGCACGACGGCATCTGCCTGGACGCGAACGGCAAGTACACATGTCT
GTGCAAGGCTGGCTGGAAAGGGACCAACTGTGATCAAGTCCTGACAAGAC
CAGACAACAAGGGGAAAGAGTTCATGTTCGGCTTTCTGCAGAATTTTGAC
GACGCGCCGACGCTGGAGGTGTTCATCACCAGCTCGAGCGAGACGCCGGT
AGCGGTCACCGTCTCCGCCCCGGGGGTGGACTATGCCCACCAGCTCACCG
TGTCAAACGCAGCGATTGAGATCGTGAACCTCCCATCAACATTGCAGCTG
ATTGAAAGCGAGAAGGCTCAAAAGGGTATCTTCATAAGCGCGGAGTCTGA
GGTCATAGTTTACGGCGTCAACAAGTACAGGGCCACCACGGATGGCTTTC
TCGCCCTCCCTGTCGACGTTCTGGGCACAGAATATTTCGTGGCCTCGTAC
ACGCCGATTTCGTCCACGCTCTATTCTGAATTTGGCATTTGGGGAGTTTT
CGATCAAACCAAAGTGACGGTCACCTTGTCGCTCGGCCGGCCGGCCTTCT
GGCTGCTGCTCACCGCGTGTCTGGCGACAGGACACGGGTATGACATCCTG
GACGAGATCTTCGGAGTGGACCGACCCGCTAGCAGAGTGAAGCGCCAGGA
ACCGGACAGTAACCAATGTCTCAGCAACCCCTGTCAGCACGACGGCATCT
GCCTGGACGCGAACGGCAAGTACACATGTCTGTGCAAGGCTGGCTGGAAA
GGGACCAACTGTGATCAAGTCCTGACAAGACCAGACAACAAGGGGAAAGA
GTTCATGTTCGGCTTTCTGCAGAATTTTGACGACGCGCCGACGCTGGAGG
TGTTCATCACCAGCTCGAGCGAGACGCCGGTAGCGGTCACCGTCTCCGCC
CCGGGGGTGGACTATGCCCACCAGCTCACCGTGTCAAACGCAGCGATTGA
GATCGTGAACCTCCCATCAACATTGCAGCTGATTGAAAGCGAGAAGGCTC
AAAAGGGTATCTTCATAAGCGCGGAGTCTGAGGTCATAGTTTACGGCGTC
AACAAGTACAGGGCCACCACGGATGGCTTTCTCGCCCTCCCTGTCGACGT
TCTGGGCACAGAATATTTCGTGGCCTCGTACACGCCGATTTCGTCCACGC
TCTATTCTGAATTTGGCATTTGGGGAGTTTTCGATCAAACCAAAGTGACG
GTCACCTTGTCGCTCGGCCGGCCGGCCTTCTGGCTGCTGCTCACCGCGTG
TCTGGCGACAGGACACGGGTATGACATCCTGGACGAGATCTTCGGAGTGG
ACCGACCCGCTAGCAGAGTGAAGCGCCAGGAACCGGACAGTAACCAATGT
CTCAGCAACCCCTGTCAGCACGACGGCATCTGCCTGGACGCGAACGGCAA
GTACACATGTCTGTGCAAGGCTGGCTGGAAAGGGACCAACTGTGATCAAG
TCCTGACAAGACCAGACAACAAGGGGAAAGAGTTCATGTTCGGCTTTCTG
CAGAATTTTGACGACGCGCCGACGCTGGAGGTGTTCATCACCAGCTCGAG
CGAGACGCCGGTAGCGGTCACCGTCTCCGCCCCGGGGGTGGACTATGCCC
ACCAGCTCACCGTGTCAAACGCAGCGATTGAGATCGTGAACCTCCCATCA
ACATTGCAGCTGATTGAAAGCGAGAAGGCTCAAAAGGGTATCTTCATAAG
CGCGGAGTCTGAGGTCATAGTTTACGGCGTCAACAAGTACAGGGCCACCA
CGGATGGCTTTCTCGCCCTCCCTGTCGACGTTCTGGGCACAGAATATTTC
GTGGCCTCGTACACGCCGATTTCGTCCACGCTCTATTCTGAATTTGGCAT
TTGGGGAGTTTTCGATCAAACCAAAGTGACGGTCACCTTGTCGCTCGGCC
GGCCGGCCTTCTGGCTGCTGCTCACCGCGTGTCTGGCGACAGGACACGGG
TATGACATCCTGGACGAGATCTTCGGAGTGGACCGACCCGCTAGCAGAGT
GAAGCGCCAGGAACCGGACAGTAACCAATGTCTCAGCAACCCCTGTCAGC
ACGACGGCATCTGCCTGGACGCGAACGGCAAGTACACATGTCTGTGCAAG
GCTGGCTGGAAAGGGACCAACTGTGATCAAGTCCTGACAAGACCAGACAA
CAAGGGGAAAGAGTTCATGTTCGGCTTTCTGCAGAATTTTGACGACGCGC
CGACGCTGGAGGTGTTCATCACCAGCTCGAGCGAGACGCCGGTAGCGGTC
ACCGTCTCCGCCCCGGGGGTGGACTATGCCCACCAGCTCACCGTGTCAAA
CGCAGCGATTGAGATCGTGAACCTCCCATCAACATTGCAGCTGATTGAAA
GCGAGAAGGCTCAAAAGGGTATCTTCATAAGCGCGGAGTCTGAGGTCATA
GTTTACGGCGTCAACAAGTACAGGGCCACCACGGATGGCTTTCTCGCCCT
CCCTGTCGACGTTCTGGGCACAGAATATTTCGTGGCCTCGTACACGCCGA
TTTCGTCCACGCTCTATTCTGAATTTGGCATTTGGGGAGTTTTCGATCAA
ACCAAAGTGACGGTCACCTTGTCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96980gene:BL96980Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96980_cuf0transcript:BL96980_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96980_cuf0-E1BL96980_cuf0-E1-1564476830-52477Branchiostoma lanceolatumexon
BL96980_cuf0-E2BL96980_cuf0-E2-1564476830-52479Branchiostoma lanceolatumexon
BL96980_cuf0-E3BL96980_cuf0-E3-1564476830-52481Branchiostoma lanceolatumexon
BL96980_cuf0-E4BL96980_cuf0-E4-1564476830-52483Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:3614841..3617355 +
Properties
Property NameValue
Transcript idBL96980_cuf0
Biotypeprotein_coding