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transcript:BL96978_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96978_cuf2
Unique Nametranscript:BL96978_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96978_cuf2

>transcript:BL96978_cuf2-protein ID=transcript:BL96978_cuf2-protein|Name=transcript:BL96978_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
ARNDRLRDEGVEDSEEGMIEDKNEPTEGGKQDVSRTHEADSANLEGGSSV
GTSRGGSRRTTVTSPIIKLQSRTDGRTNRGGKKKIKNGRKPPARLRGRQR
TVAASSGVTTLW
Run BLAST on NCBI

mRNA from alignment at Sc0000004:5066750..5069262-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96978_cuf2 ID=transcript:BL96978_cuf2|Name=transcript:BL96978_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2513bp|location=Sequence derived from alignment at Sc0000004:5066750..5069262- (Branchiostoma lanceolatum)
CCGCAAGGAACGACAGACTGCGGGATGAAGGCGTGGAGGACAGCGAGGAA GGAATGATAGAAGACAAAAATGAACCAACTGAAGGAGGCAAACAAGACGT CAGCAGGACCCACGAAGCCGACAGTGCGAACCTGGAGGGCGGTTCATCAG TGGGTGCGGTATATTGAACCTTTGTGTCTGCCCGAATCCTAGCCGTGGCT ACTCCGGAAGGGGGCTTAGGCTTGTATATCATATTACATATTAGGGCTTT GTTTGTTGACTATCGACTATTATTATTATTATTGTTGGCAGCCGTCAGTC TCGAAAGACTATGGCGTCGCATCCTGGCCAGTCTGTAGTGGGTTGTCCGC TAGGGCTACTATATGTGTAACATACAAACAATTTGCTTGTATATCATATT AGGGCTACTTTATGTAATACACAAACAAAAATGCCTTCTGGAGTCACCAC AGCCACCCAAATCCCTGTGTAAAAAAAAGTCTATGCCCTTCGACGCGATC ACAATCGTCGGAGGCCGTCGCACGCTTTTTTGATGGAATTTTCAATCAGG CAGCGACAAAACCAACCGCCGACAGGATCTAAAAAAGCCTTTTTCAGTAA CAAAACTGCTGAAGTCATTTGTAGCTCTGGGATAATGACAGCGCCGACGG AATTCGACCGGTTTCGACTTTATTGTCTTTATCAAAAATGACAGAGATCG GACCACTCCTCCTTTTATACTTTTTCTGTGCCTAACTAGTGCACGGCGCT CTAACCGGGGTCTTTGATAATGTAGCATCGGCAGATATGCTGAAAATGGT AATGTATTATCTGAAATAGAAGACAAAACGAATGAAGAAAGAAATGATGT AAACATTTCATCGATGTATGACAAAATCAGTAGACTTCGATGCATCTGTG TAGTAAAGGCTTGCCGTTTTGTTTTAAGTTTGTGTTCCTCACAGAGGCAA ATGCATGCTGAAATACTTTTTCCTAGCGTGTTTGAACTACTCATCAATAA TAACTATTGGTATTTGCATTTCTATCGTGTCCTGTTTGTTGAAACAATAG GTACATCGAGGGGTGGCAGTCGAAGGACAACGGTGACGTCTCCCATCATC AAATTGCAATCCAGAAGTACGATTTACATCTTGTCCTCCTTTGACGAATA GTTGGCTCCCAAAGTCATTGGGGACCCCTAGCAAACAATGTCAAATTGCA ATTTCATTTCATCTTCTGCATTCTAGTTCTAATCATTCTCCTACGCAGAG CCTCGCCAGTGGCCTATACGGTATACCTTGGAGAGGCTCTGCTAAACCGG GCTGAGGTTTCCACTTTTGTGGGCGTGGCCTCTAACCAGCTGTCAGCCAA TCATAGAATCGCCAGAATGTTTTCTCCAGGTAAAGCCGATTGTCTGATTG GCTGACAGCTGGTTAGATGATAAACCCACGATAGTGGAAACATCAGCGAA GTTTCTCAGAGCCTTCCCAGTCTATGTGTATATTAGGTAGGCCGTGTGCG AGGCTCTGCGTAGGAGAATGATTCCAGTGGACTTAAACCTTAGCCTACTG TCATTTCATGAACTGACGATACATGTTTGAATACAGCTGACGGACGGACG AATAGAGGAGGGAAGAAAAAGATCAAAAATGGTAAAAACAATTTGCACTT TAGAACTGAAGTGTGTGTTTGTGTATGTCTGTGTTTGTGTGTGTCTGTGT GTGCGTGTGTCTGTGCGCACGTGTGTGTGTGTATCTATATGTGTGTGTGT GTATGTGAATGTGTGTGTACGCACGTGTGTGTATGTGTGTCTGTGCCTGT CTGTGTGTCTACGTATATGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTCCATGTAAAAGTTTTCATTGGTATCAATTTGACTTATC TTCTTCATTTTTAGGTCGAAAACCTCCCGCAAGGTTACGAGGCAGACAGA GGACGGTTGCCGCTTCTTCAGGTTAGCACGTCCATGGTGTAAATAAACGG GTACGGCAAAACCTAAAACGTAGAGTCTATAGTGACCCTGCAATGAACTT GTCACAGTAAACAGATGGCCACTATAAACAGGATTATTAATCCTTGGGTC AATGGCAAAATGACCTTGGGAACCACGCAAAAGTGACCATAATATAATGG CCAGCTAGGTGCCCGTATACCTACATGTGGTGATGAACAATGCAGGTTTA GTATAGTGCCGTGATATCGGATAAGGACGTTATAATATGATATGGCTACT GAAAATTGCTTTATTCAAAACAGATGCCACATGTATGATATTAGAGAATA CGCACAAATCCTTACATTACAGGTGTGACGACGTTGTGGGAGACGAAATC CGGGATCAGCTCATTTCTTATAATACACGTAAAGTTGCTTTACCTCGTCC ATATTACATTAGAGTTAACGTTAAATTTCGATTTGCTATTTTACAGGTGT GACGACATTGTGG

Coding sequence (CDS) from alignment at Sc0000004:5066750..5069262-

>transcript:BL96978_cuf2 ID=transcript:BL96978_cuf2|Name=transcript:BL96978_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1680bp|location=Sequence derived from alignment at Sc0000004:5066750..5069262- (Branchiostoma lanceolatum)
GCAAGGAACGACAGACTGCGGGATGAAGGCGTGGAGGACAGCGAGGAAGG
AATGATAGAAGACAAAAATGAACCAACTGAAGGAGGCAAACAAGACGTCA
GCAGGACCCACGAAGCCGACAGTGCGAACCTGGAGGGCGGTTCATCAGTG
GGTACATCGAGGGGTGGCAGTCGAAGGACAACGGTGACGTCTCCCATCAT
CAAATTGCAATCCAGAACTGACGGACGGACGAATAGAGGAGGGAAGAAAA
AGATCAAAAATGGTCGAAAACCTCCCGCAAGGTTACGAGGCAGACAGAGG
ACGGTTGCCGCTTCTTCAGGTGTGACGACATTGTGGGCAAGGAACGACAG
ACTGCGGGATGAAGGCGTGGAGGACAGCGAGGAAGGAATGATAGAAGACA
AAAATGAACCAACTGAAGGAGGCAAACAAGACGTCAGCAGGACCCACGAA
GCCGACAGTGCGAACCTGGAGGGCGGTTCATCAGTGGGTACATCGAGGGG
TGGCAGTCGAAGGACAACGGTGACGTCTCCCATCATCAAATTGCAATCCA
GAACTGACGGACGGACGAATAGAGGAGGGAAGAAAAAGATCAAAAATGGT
CGAAAACCTCCCGCAAGGTTACGAGGCAGACAGAGGACGGTTGCCGCTTC
TTCAGGTGTGACGACATTGTGGGCAAGGAACGACAGACTGCGGGATGAAG
GCGTGGAGGACAGCGAGGAAGGAATGATAGAAGACAAAAATGAACCAACT
GAAGGAGGCAAACAAGACGTCAGCAGGACCCACGAAGCCGACAGTGCGAA
CCTGGAGGGCGGTTCATCAGTGGGTACATCGAGGGGTGGCAGTCGAAGGA
CAACGGTGACGTCTCCCATCATCAAATTGCAATCCAGAACTGACGGACGG
ACGAATAGAGGAGGGAAGAAAAAGATCAAAAATGGTCGAAAACCTCCCGC
AAGGTTACGAGGCAGACAGAGGACGGTTGCCGCTTCTTCAGGTGTGACGA
CATTGTGGGCAAGGAACGACAGACTGCGGGATGAAGGCGTGGAGGACAGC
GAGGAAGGAATGATAGAAGACAAAAATGAACCAACTGAAGGAGGCAAACA
AGACGTCAGCAGGACCCACGAAGCCGACAGTGCGAACCTGGAGGGCGGTT
CATCAGTGGGTACATCGAGGGGTGGCAGTCGAAGGACAACGGTGACGTCT
CCCATCATCAAATTGCAATCCAGAACTGACGGACGGACGAATAGAGGAGG
GAAGAAAAAGATCAAAAATGGTCGAAAACCTCCCGCAAGGTTACGAGGCA
GACAGAGGACGGTTGCCGCTTCTTCAGGTGTGACGACATTGTGGGCAAGG
AACGACAGACTGCGGGATGAAGGCGTGGAGGACAGCGAGGAAGGAATGAT
AGAAGACAAAAATGAACCAACTGAAGGAGGCAAACAAGACGTCAGCAGGA
CCCACGAAGCCGACAGTGCGAACCTGGAGGGCGGTTCATCAGTGGGTACA
TCGAGGGGTGGCAGTCGAAGGACAACGGTGACGTCTCCCATCATCAAATT
GCAATCCAGAACTGACGGACGGACGAATAGAGGAGGGAAGAAAAAGATCA
AAAATGGTCGAAAACCTCCCGCAAGGTTACGAGGCAGACAGAGGACGGTT
GCCGCTTCTTCAGGTGTGACGACATTGTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96978gene:BL96978Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96978_cuf2transcript:BL96978_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96978_cuf2-E1BL96978_cuf2-E1-1564476830-53954Branchiostoma lanceolatumexon
BL96978_cuf2-E2BL96978_cuf2-E2-1564476830-53951Branchiostoma lanceolatumexon
BL96978_cuf2-E3BL96978_cuf2-E3-1564476830-53949Branchiostoma lanceolatumexon
BL96978_cuf2-E4BL96978_cuf2-E4-1564476830-53947Branchiostoma lanceolatumexon
BL96978_cuf2-E5BL96978_cuf2-E5-1564476830-53945Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000004genomeSc0000004:5066750..5069262 -
Properties
Property NameValue
Transcript idBL96978_cuf2
Biotypeprotein_coding