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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96977_cuf1 >transcript:BL96977_cuf1-protein ID=transcript:BL96977_cuf1-protein|Name=transcript:BL96977_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
GNTRYQMEKVLRFHYFQNEEDLHLTFSAIEDVISTSGREADYTFVQANRL
FGQAGMSFRHDFLMDTSRHYHSSLATVEFSDEEMARLAINSWVAGKTGGK
VNGVIPQGLLKPLTKLVLVNAVYFTGKWRTEFDPQLVNMADFFVTPERAE
KVPMMQLSGEFNVTEDPSLDCAVVELPYSGNEVVMDIVLPNQRDGLERLQ
GQLTRRALNRIFRRYLPLEGSVVLPT Run BLAST on NCBI mRNA from alignment at Sc0000004:5063228..5066598- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96977_cuf1 ID=transcript:BL96977_cuf1|Name=transcript:BL96977_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3371bp|location=Sequence derived from alignment at Sc0000004:5063228..5066598- (Branchiostoma lanceolatum)
GGGGGAACACAAGGTACCAGGGTGGCTGATGTCAATGGCTACATTAAGAT
GTACATTCATTCCGATCCCTATTGGTCTAAATATAGCAATTATAAAAACT
CCAACTCTAATACAAGTACAAGAGTAGAAGTACTTAGAATACATAATACA
GAACTTCTGATACTATTTTAAAACAATCTAACGGTACTCTTGTACTTAGA
TTCGGCCTCTCCGTGTTGCCTTAGCATGGAATCCATCCATATTCAGATGC
CAAGTCCATAAAACAAAACTTGCTTTTTTGGGTGGTCATTAGTACTGGTA
ACGCTAGAAATGAACACAATTCATCTAGGCCTTCTCAAGTTATCTTGTTC
ACACACACACACACACACACACACACACACACACACACAGACACACACAC
GCACACGCACACGAACCCAGCTGTCTAAAATATAATCTCAGAGGTAAAGA
GGTTCAAGGATCTTCTGACGTGAACACAGAAAATGATGTACACTTTGTCT
TAAAGGTACCAGATGGAGAAAGTTTTGAGGTTTCACTACTTCCAAAACGA
GGAGGACTTGCACTTGACCTTCTCTGCCATAGAAGACGTCATTTCCACTT
CCGGTAGAGAGGCAGACTACACGTTTGTACAGGCGAACCGGCTGTTTGGG
CAGGCGGGAATGAGGTAAGGATAGATGGACTTTACTCAAAGCTGTAAGCA
CGTAGGCACGTCGACTACCTACCCACCTACCTACAAAGCTGTAAAATGCA
GGGATGCTGTCATAGGTGTGTTGATAACTTTCATGACGTTCGTAGCACGT
TGCCTCTTCTGCATGCATTTGCATTCTGACTAAGTGATTAAAGTACGTCA
TCGCATTCACGGACGCACAGCATCTATTATCTTGGTAAGGGTCTATTAGT
ACGATACTAAAAGACGGTTAGATTGCCACCAGCTCGGATGTGTGGCATTA
TAAGTCCAGAACTTTGATACAACTGAGCCATATTTCATCTAAGTGGTAAA
TGATTGGACTGTCAATATTGCGACATGTATAAGTTAGTTAAAGGTGTACA
AGACCAAGAATAGACTATGTAAATTTTGAAGTACTTTTTAATTTTGTGTG
CCTTGTATTGTTGCACGCACAGTTTCCGACACGATTTTCTGATGGACACG
TCCCGACACTACCACTCGTCGCTGGCAACTGTAGAGTTCTCGGACGAGGA
GATGGCCAGACTCGCCATCAACTCTTGGGTAGCTGGGAAAACTGGGGGAA
AGGTCAACGGTGTCATTCCACAGGTGAGACAGAAATCATATTTCTGGAAA
AAAAAACTAGTTGTACCAGTACTTCCCCTCCCTTGACAATGGGGATAGTC
TAGTGGAATGTAACATGTTTTGATATCAGTTGGACTATCTTTGCAAAATA
CTTGGATATTTAGAGTGCACTGCGTCAATCGTAGTCCTTGTTTTTCACTG
GACTCTAAAGTAGTTTTCCCTTGTGTTCATAATGCTTTTTGAGACGTAAA
GACATTTCTAGAAAGCATTGCACTCAACTATTTTACGGTTAAATCAAGGT
GACAATATTAGAATAGTAGAATATCTTAGAGCTTCTGAAATGTAACGTAC
TTACAGTAAGAACATTGACTATCTTTCATATTCGCTAGATGTTTACAATA
TCATACTCCCCGACATAGGGTCTCCTGAAGCCGCTGACCAAGCTCGTTCT
TGTGAACGCCGTGTACTTCACGGGAAAGTGGAGAACGGAGTTTGACCCAC
AACTCGTCAACATGGCGGACTTCTTCGTCACTCCCGAACGCGCCGAGAAG
GTTCCCATGATGCAACTTAGGTACGTAGAACCTGCCTAGGCTGATATTGT
GCTAAAATATGACACACCCAAAAGAAATAAAAGATACAAATGAATAGCAT
TATAAACAATTTCATCAGGTTGGTACAAATGTAAGGCTACACCAAGTAAT
TTTTATGGATGACGTCCGCGCGCGCATTGATTTTGGTCTGTTCCCAGAAG
AACAAAAACCAAGAAATTCCGCTTCCTGTAATAATGACCAAATAATTACG
ACAGTGCTACACATCAATGGGATGTGGAAAGAAACAGGACCGGACAACAA
CTGCTGTTCAACTTCAACTGATTTCTTCAAAGTATTGCTGTTTTAATGAT
GAATAGAATAATTTTTAGTTGTTACACGGTGTTCTCTCATTCAATTTGTG
TCCTAACATGTGTCGTCGACTATTATATTTCAAATCTAGGCGTCTTGTTT
TTATTGGCCCTTCTTGTTTCTTTTTCGCGCTCTCGCATTAGATTTAGGGT
CTCCAAAGGACGTCATCCATGAAAATTACTTGGTGTAGCCTAAATGGAAG
ACTTTCTGTCCGTCAGAATGTCTGACCTTCCTCAGGGCAATAAAGTATCC
AAGTCATTATTGCCCCGAAGAAGGTGACGGACTCTTTTCTTGTAAATAGA
GGGCTTTTTCATTCTGTATAGGACTTTGGGAGTACCTTTTTTTTCGTTCA
AACTTGTACAGTGGGACTAGGATCGACTTATTCATTTATTTTATACATTT
TTCGACAGTTTTGTTTGAAGTTTCAAAATATGCAGTACTCAGCACATATC
AGAAGTTTTCAGATTGAGAAATGTACTATATATCAGCTGAAAGGTATGCA
TGGCACTGAACGTTTCTGTTGCATTTGTTCCAACATTTTCCAGCGGCGAG
TTTAACGTGACGGAGGATCCGAGTCTGGACTGTGCTGTGGTAGAGCTACC
GTACTCTGGGAACGAGGTGGTGATGGACATCGTCCTGCCCAATCAGAGGG
ACGGACTGGAGCGTCTGCAGGGTCAGCTGACCAGAAGGGCGCTCAACAGG
ATCTTCCGCAGGTGATTTTCTTCCCTCCCCATGTCTTCATAATGTTAATG
TGTTCTGCTTATAATATACTCTTCCCCCATTATCGGAAAAGTTGTCAACA
ACAGAACATTTATTTTCCTACTACGGGTAACTGCACACCTGTATAACAGA
CATTAAAGAGATGTTAATACAATTATAGGGACGGACAGAAATTCGAATTT
TAAGTCACTATCTTCTTCCACGCTTAGTGCAAGGGTCTTGGAAAACGTCA
TATCTTGCTTTCTTAAAGCTACTTTAAGAATAAAATATTTCCTTAAGCTT
CAGGAATATGGCATCTTCTAAGACGATCGAGTAAGAACACTTGGTCACAC
ACACATTTCCACAAATCAAAAGAAAGGAGTAAGAAAATAAAGTTTCCGTG
TTCCTTCCGAGCTTTCTGTATTGTTAAAGTATTAATATCTGTGGTTCAGT
CAGAAGCCTGACAACCCTCTACATTCTGTCTCAGATACCTGCCCCTGGAG
GGCTCCGTGGTCCTCCCGACG Coding sequence (CDS) from alignment at Sc0000004:5063228..5066598- >transcript:BL96977_cuf1 ID=transcript:BL96977_cuf1|Name=transcript:BL96977_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4068bp|location=Sequence derived from alignment at Sc0000004:5063228..5066598- (Branchiostoma lanceolatum)
GGGAACACAAGGTACCAGATGGAGAAAGTTTTGAGGTTTCACTACTTCCA
AAACGAGGAGGACTTGCACTTGACCTTCTCTGCCATAGAAGACGTCATTT
CCACTTCCGGTAGAGAGGCAGACTACACGTTTGTACAGGCGAACCGGCTG
TTTGGGCAGGCGGGAATGAGTTTCCGACACGATTTTCTGATGGACACGTC
CCGACACTACCACTCGTCGCTGGCAACTGTAGAGTTCTCGGACGAGGAGA
TGGCCAGACTCGCCATCAACTCTTGGGTAGCTGGGAAAACTGGGGGAAAG
GTCAACGGTGTCATTCCACAGGGTCTCCTGAAGCCGCTGACCAAGCTCGT
TCTTGTGAACGCCGTGTACTTCACGGGAAAGTGGAGAACGGAGTTTGACC
CACAACTCGTCAACATGGCGGACTTCTTCGTCACTCCCGAACGCGCCGAG
AAGGTTCCCATGATGCAACTTAGCGGCGAGTTTAACGTGACGGAGGATCC
GAGTCTGGACTGTGCTGTGGTAGAGCTACCGTACTCTGGGAACGAGGTGG
TGATGGACATCGTCCTGCCCAATCAGAGGGACGGACTGGAGCGTCTGCAG
GGTCAGCTGACCAGAAGGGCGCTCAACAGGATCTTCCGCAGATACCTGCC
CCTGGAGGGCTCCGTGGTCCTCCCGACGGGGAACACAAGGTACCAGATGG
AGAAAGTTTTGAGGTTTCACTACTTCCAAAACGAGGAGGACTTGCACTTG
ACCTTCTCTGCCATAGAAGACGTCATTTCCACTTCCGGTAGAGAGGCAGA
CTACACGTTTGTACAGGCGAACCGGCTGTTTGGGCAGGCGGGAATGAGTT
TCCGACACGATTTTCTGATGGACACGTCCCGACACTACCACTCGTCGCTG
GCAACTGTAGAGTTCTCGGACGAGGAGATGGCCAGACTCGCCATCAACTC
TTGGGTAGCTGGGAAAACTGGGGGAAAGGTCAACGGTGTCATTCCACAGG
GTCTCCTGAAGCCGCTGACCAAGCTCGTTCTTGTGAACGCCGTGTACTTC
ACGGGAAAGTGGAGAACGGAGTTTGACCCACAACTCGTCAACATGGCGGA
CTTCTTCGTCACTCCCGAACGCGCCGAGAAGGTTCCCATGATGCAACTTA
GCGGCGAGTTTAACGTGACGGAGGATCCGAGTCTGGACTGTGCTGTGGTA
GAGCTACCGTACTCTGGGAACGAGGTGGTGATGGACATCGTCCTGCCCAA
TCAGAGGGACGGACTGGAGCGTCTGCAGGGTCAGCTGACCAGAAGGGCGC
TCAACAGGATCTTCCGCAGATACCTGCCCCTGGAGGGCTCCGTGGTCCTC
CCGACGGGGAACACAAGGTACCAGATGGAGAAAGTTTTGAGGTTTCACTA
CTTCCAAAACGAGGAGGACTTGCACTTGACCTTCTCTGCCATAGAAGACG
TCATTTCCACTTCCGGTAGAGAGGCAGACTACACGTTTGTACAGGCGAAC
CGGCTGTTTGGGCAGGCGGGAATGAGTTTCCGACACGATTTTCTGATGGA
CACGTCCCGACACTACCACTCGTCGCTGGCAACTGTAGAGTTCTCGGACG
AGGAGATGGCCAGACTCGCCATCAACTCTTGGGTAGCTGGGAAAACTGGG
GGAAAGGTCAACGGTGTCATTCCACAGGGTCTCCTGAAGCCGCTGACCAA
GCTCGTTCTTGTGAACGCCGTGTACTTCACGGGAAAGTGGAGAACGGAGT
TTGACCCACAACTCGTCAACATGGCGGACTTCTTCGTCACTCCCGAACGC
GCCGAGAAGGTTCCCATGATGCAACTTAGCGGCGAGTTTAACGTGACGGA
GGATCCGAGTCTGGACTGTGCTGTGGTAGAGCTACCGTACTCTGGGAACG
AGGTGGTGATGGACATCGTCCTGCCCAATCAGAGGGACGGACTGGAGCGT
CTGCAGGGTCAGCTGACCAGAAGGGCGCTCAACAGGATCTTCCGCAGATA
CCTGCCCCTGGAGGGCTCCGTGGTCCTCCCGACGGGGAACACAAGGTACC
AGATGGAGAAAGTTTTGAGGTTTCACTACTTCCAAAACGAGGAGGACTTG
CACTTGACCTTCTCTGCCATAGAAGACGTCATTTCCACTTCCGGTAGAGA
GGCAGACTACACGTTTGTACAGGCGAACCGGCTGTTTGGGCAGGCGGGAA
TGAGTTTCCGACACGATTTTCTGATGGACACGTCCCGACACTACCACTCG
TCGCTGGCAACTGTAGAGTTCTCGGACGAGGAGATGGCCAGACTCGCCAT
CAACTCTTGGGTAGCTGGGAAAACTGGGGGAAAGGTCAACGGTGTCATTC
CACAGGGTCTCCTGAAGCCGCTGACCAAGCTCGTTCTTGTGAACGCCGTG
TACTTCACGGGAAAGTGGAGAACGGAGTTTGACCCACAACTCGTCAACAT
GGCGGACTTCTTCGTCACTCCCGAACGCGCCGAGAAGGTTCCCATGATGC
AACTTAGCGGCGAGTTTAACGTGACGGAGGATCCGAGTCTGGACTGTGCT
GTGGTAGAGCTACCGTACTCTGGGAACGAGGTGGTGATGGACATCGTCCT
GCCCAATCAGAGGGACGGACTGGAGCGTCTGCAGGGTCAGCTGACCAGAA
GGGCGCTCAACAGGATCTTCCGCAGATACCTGCCCCTGGAGGGCTCCGTG
GTCCTCCCGACGGGGAACACAAGGTACCAGATGGAGAAAGTTTTGAGGTT
TCACTACTTCCAAAACGAGGAGGACTTGCACTTGACCTTCTCTGCCATAG
AAGACGTCATTTCCACTTCCGGTAGAGAGGCAGACTACACGTTTGTACAG
GCGAACCGGCTGTTTGGGCAGGCGGGAATGAGTTTCCGACACGATTTTCT
GATGGACACGTCCCGACACTACCACTCGTCGCTGGCAACTGTAGAGTTCT
CGGACGAGGAGATGGCCAGACTCGCCATCAACTCTTGGGTAGCTGGGAAA
ACTGGGGGAAAGGTCAACGGTGTCATTCCACAGGGTCTCCTGAAGCCGCT
GACCAAGCTCGTTCTTGTGAACGCCGTGTACTTCACGGGAAAGTGGAGAA
CGGAGTTTGACCCACAACTCGTCAACATGGCGGACTTCTTCGTCACTCCC
GAACGCGCCGAGAAGGTTCCCATGATGCAACTTAGCGGCGAGTTTAACGT
GACGGAGGATCCGAGTCTGGACTGTGCTGTGGTAGAGCTACCGTACTCTG
GGAACGAGGTGGTGATGGACATCGTCCTGCCCAATCAGAGGGACGGACTG
GAGCGTCTGCAGGGTCAGCTGACCAGAAGGGCGCTCAACAGGATCTTCCG
CAGATACCTGCCCCTGGAGGGCTCCGTGGTCCTCCCGACGGGGAACACAA
GGTACCAGATGGAGAAAGTTTTGAGGTTTCACTACTTCCAAAACGAGGAG
GACTTGCACTTGACCTTCTCTGCCATAGAAGACGTCATTTCCACTTCCGG
TAGAGAGGCAGACTACACGTTTGTACAGGCGAACCGGCTGTTTGGGCAGG
CGGGAATGAGTTTCCGACACGATTTTCTGATGGACACGTCCCGACACTAC
CACTCGTCGCTGGCAACTGTAGAGTTCTCGGACGAGGAGATGGCCAGACT
CGCCATCAACTCTTGGGTAGCTGGGAAAACTGGGGGAAAGGTCAACGGTG
TCATTCCACAGGGTCTCCTGAAGCCGCTGACCAAGCTCGTTCTTGTGAAC
GCCGTGTACTTCACGGGAAAGTGGAGAACGGAGTTTGACCCACAACTCGT
CAACATGGCGGACTTCTTCGTCACTCCCGAACGCGCCGAGAAGGTTCCCA
TGATGCAACTTAGCGGCGAGTTTAACGTGACGGAGGATCCGAGTCTGGAC
TGTGCTGTGGTAGAGCTACCGTACTCTGGGAACGAGGTGGTGATGGACAT
CGTCCTGCCCAATCAGAGGGACGGACTGGAGCGTCTGCAGGGTCAGCTGA
CCAGAAGGGCGCTCAACAGGATCTTCCGCAGATACCTGCCCCTGGAGGGC
TCCGTGGTCCTCCCGACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:5063228..5066598 - |
Properties
| Property Name | Value |
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| Transcript id | BL96977_cuf1 |
| Biotype | protein_coding |
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