transcript:BL96970_cuf5 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96970_cuf5
Unique Nametranscript:BL96970_cuf5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96970_cuf5

>transcript:BL96970_cuf5-protein ID=transcript:BL96970_cuf5-protein|Name=transcript:BL96970_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=150bp
VCGKMSKFLSQYTRHVGQHCSTVATHACPVCHVTFTSMAEFRDHIDSHVA
KGETPWHCAVCNTYHEQQTRLVKHAKIHSDQTPFLCPHCGKGFKDVAHLQ
VHENIHTRAKEYACKDCGRVFAQYSSMKRHELTHNKSQPHQCPFCERRVL
Run BLAST on NCBI

mRNA from alignment at Sc0000044:526827..529925+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96970_cuf5 ID=transcript:BL96970_cuf5|Name=transcript:BL96970_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3099bp|location=Sequence derived from alignment at Sc0000044:526827..529925+ (Branchiostoma lanceolatum)
GTGTGCGGTAAGATGTCAAAGTTCCTGAGCCAGTACACGCGGCACGTCGG
GCAGCACTGCAGCACGGTCGCCACACACGCCTGCCCCGTCTGTCACGTAA
CGTTCACATCGATGGCGGAGTTCCGGGACCACATCGACAGCCACGTGGCA
AAGGTAATGTGTACAGTCGTGTAATTCGTAGACATCGGGGTAATAAGATA
TGCCAAAAATAGTTACTCGAGTAACTGGATAAAATTTCCAAATTTTATCT
AGTTGTTTGAGTAGCTATTTTTAGCAATGTGTAATTCTGCCACAAAATAC
CCCAGCAGTTTAAAAAAAGCTGTCAGGCCTAGGCCCAAACATATACGACT
TCTTACCATAGCCGTAACATGGCCAAATATGTTAAGGAAGGAGTTAAGGT
AGTTTAAAGTACTGTGGACTCATTCCTCAGCTAACCTACATCTACCGCAC
CACACTCGTCTCTCAGTATAAGACATCTGGAGTTGCAAAGTTCCCGTTCA
GCCTGTCAGACCGGTCTCGCCCTCTCAGCTTTTTCAATTTGGCTAAATGA
CACAAGTACATGTACCTACATGTAATAAGTTCCAGTGCATACCGCCCTCC
CATCCCAACCAGAACCAGCACGTCTCCCTCGAATTGGTGCCGCTGGAGAA
GGCGGATGCCCAAAGTGTGTGGGTCTCAGATTCGCAACCTGTCATCCACC
TTAAACAAATTCACGCGAATACTCGATCTGTATTTGTATCTGTACTATGT
ATCTGTACTATGTATCTGTACTATGTATCTGAATACGAATAAAGATTATA
CGAGTGGTTGCCATTAAATACCGCCCTGGTAATGCTTAGGTCTCAATAGG
AAACGGGCCCCGCCACCAACAGGTCCAGTGAGATAGAGGCTTTATCTGAT
CTTATCCTTAGCTTAGGCTAATCTAATGTTATCTAATCTTTAACCCTAAG
GGCTGTTTTTTTCACACCCTAATCTTCAATGCGTTTCTTGAAAATTTAAG
GATGAAACCCCGTGGCACTACAACACATGCTCTAAACAACAACAAAAAAT
CTTATCTAATCCTCAATGCAGTTTTATTCACACCCTAATCTTCGATGCGT
TTCTTTGAAATTGAAGGGTGAGACTCCGTGGCACTACAACACATGCTCTA
AGCAACAGCAAAAAATCTTAGATCTGATCTAATCCTCAATGCAGTTTTAT
TCACACCTTAATCTTCGATGCGTTTCTTGAAATTTAAGGGTGAGACTCCG
TTTCCAATGGACCGATCCAGTTCGAACACCAGAAGCCCCGCCCCCTGTTC
TATTTCGAATAGTCCGTCAAAAAGCTCAGGAGAAGACAGTCTGCATATTT
GACAGCCAAGCGCGCGCGACCTTTCTTGTCCGTCAAGGGCTGTTTTTGAC
GGACTATTCGAAATAGAACAGGGGGCGGGGCTTATGGTGTTCGATCTGGA
TCGGTCCATTGGAAACGGGCCCGCCACCAACAGATCCAGTGAGATAGGGG
CTTTATCTGATCTAATCCTTATCTAATGTAATCTAATCTTTAACCCTAAG
GGTGAGACTCCGTGGCACTGCGCGGTGTGCAACACGTACCACGAGCAGCA
GACCCGCCTGGTGAAGCACGCCAAGATCCACTCCGACCAGACCCCGTTTC
TCTGCCCGCACTGCGGGAAGGGCTTCAAGGACGTCGCGCACCTACAGGTC
TGTATCTGTACACTACCAAAAATGTTTTCCCATTTTTCAAGTTTTTCTTA
ACTCATGAACCAATTTTCTTCTGAAGGGAGTTTAAACTGTAAATGCCAAC
ACCATAAATTGGACTTACCCAAATTTTCGACTGATCAGCTACTGTCTTTT
TCGAGGAGTGAGCAATCCACTGCTTCTGTGACGTCACGTTATGCAGATGA
GACACGTGACTCTGGAAGCAGTGGATCATATGCAATTTTCTTATATGAAG
AATTTCAAGAATGAATATGAAAAAGAAATGGAAGATTCTTTCCATGGCAA
TTCAATGTTTGTTTGTTTGATTTATCAGGTCCATGAGAACATCCACACCA
GGGCAAAGGAGTACGCCTGTAAGGACTGTGGCCGGGTCTTCGCACAGTAC
TCCAGGTAGGACCAGTAAAAGGATAGCTCGTCTGTGAGTGAGTCTGCCAA
ATTGGATCAATATAACTTTCCAATTGTGAGGCATGCCACAATTTGGCCCT
TTTGTGTCTGCCATGGTATTTGATTGTAATTTTATTGCAAATTTGTTAGT
TAACCATTCATCATTCATTCATTTTCTCTCCAGCATGAAGCGCCACGAGC
TGACGCACAACAAGAGCCAGCCGCACCAGTGCCCGTTCTGCGAACGCAGG
TTTGGTTGTTTGTCTGTTTGTTTGTCTGTGTGTTTTGCCAGGGTGGCCCT
TCTCAGTGGCCTGAAAAACAGACAAATAACTTGAATTATACATAGATGGC
ACGTAACAATTTATGTATCACACACAGGTACATTTTTTTGGACAGACTAG
GCTTTCATTTGTATTCACAATCAATATTCCGGTCCAGTCATGAAGTCAGC
CTTGGTTTTCAGCATAGATTAAATGTTTTCATTGAGGAATGAATGAATGA
ATGAATGAATGAATGAATGAATGAAGAACTTTAGAGAACTCGTGAGAGTT
ATGTGAACAATGCACAGAAATATGTAGAGACGGGAAAAGACAGTTATTTT
ATAGATATGATATGATAGATCTGACTGAATGATTTGTTAACGTCCCAATG
GTCATCAGTAGACTAGACTTGTGGAGCATGGGATACCCCTGGCAGATTCG
TTCACCTGCCCTTCGAGAGATTGTAAATATTAGTACGAAATGACAACAAT
ATAAGGATATAATTTATTTTATAAAACAGGATCGCTATGTACCACATGCT
AAGTGTCATGGCGCCCCCTTTGTAAATACTTCAGCTATACAATGCTCTCC
CAAGGGAGGAATAAAGTACAAGAAAGAATGAATGAATGGATGAATGAATG
AATGAATGAATGAATGAATGAGAGAAAGAAAGCTTGTTCCAGAAACAGGA
ACCTCTGTGACTTTCATGTAACTCACGCCTTCCATGTTCCAGGTTCTCC

Coding sequence (CDS) from alignment at Sc0000044:526827..529925+

>transcript:BL96970_cuf5 ID=transcript:BL96970_cuf5|Name=transcript:BL96970_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2250bp|location=Sequence derived from alignment at Sc0000044:526827..529925+ (Branchiostoma lanceolatum)
GTGTGCGGTAAGATGTCAAAGTTCCTGAGCCAGTACACGCGGCACGTCGG
GCAGCACTGCAGCACGGTCGCCACACACGCCTGCCCCGTCTGTCACGTAA
CGTTCACATCGATGGCGGAGTTCCGGGACCACATCGACAGCCACGTGGCA
AAGGGTGAGACTCCGTGGCACTGCGCGGTGTGCAACACGTACCACGAGCA
GCAGACCCGCCTGGTGAAGCACGCCAAGATCCACTCCGACCAGACCCCGT
TTCTCTGCCCGCACTGCGGGAAGGGCTTCAAGGACGTCGCGCACCTACAG
GTCCATGAGAACATCCACACCAGGGCAAAGGAGTACGCCTGTAAGGACTG
TGGCCGGGTCTTCGCACAGTACTCCAGCATGAAGCGCCACGAGCTGACGC
ACAACAAGAGCCAGCCGCACCAGTGCCCGTTCTGCGAACGCAGGGTTCTC
GTGTGCGGTAAGATGTCAAAGTTCCTGAGCCAGTACACGCGGCACGTCGG
GCAGCACTGCAGCACGGTCGCCACACACGCCTGCCCCGTCTGTCACGTAA
CGTTCACATCGATGGCGGAGTTCCGGGACCACATCGACAGCCACGTGGCA
AAGGGTGAGACTCCGTGGCACTGCGCGGTGTGCAACACGTACCACGAGCA
GCAGACCCGCCTGGTGAAGCACGCCAAGATCCACTCCGACCAGACCCCGT
TTCTCTGCCCGCACTGCGGGAAGGGCTTCAAGGACGTCGCGCACCTACAG
GTCCATGAGAACATCCACACCAGGGCAAAGGAGTACGCCTGTAAGGACTG
TGGCCGGGTCTTCGCACAGTACTCCAGCATGAAGCGCCACGAGCTGACGC
ACAACAAGAGCCAGCCGCACCAGTGCCCGTTCTGCGAACGCAGGGTTCTC
GTGTGCGGTAAGATGTCAAAGTTCCTGAGCCAGTACACGCGGCACGTCGG
GCAGCACTGCAGCACGGTCGCCACACACGCCTGCCCCGTCTGTCACGTAA
CGTTCACATCGATGGCGGAGTTCCGGGACCACATCGACAGCCACGTGGCA
AAGGGTGAGACTCCGTGGCACTGCGCGGTGTGCAACACGTACCACGAGCA
GCAGACCCGCCTGGTGAAGCACGCCAAGATCCACTCCGACCAGACCCCGT
TTCTCTGCCCGCACTGCGGGAAGGGCTTCAAGGACGTCGCGCACCTACAG
GTCCATGAGAACATCCACACCAGGGCAAAGGAGTACGCCTGTAAGGACTG
TGGCCGGGTCTTCGCACAGTACTCCAGCATGAAGCGCCACGAGCTGACGC
ACAACAAGAGCCAGCCGCACCAGTGCCCGTTCTGCGAACGCAGGGTTCTC
GTGTGCGGTAAGATGTCAAAGTTCCTGAGCCAGTACACGCGGCACGTCGG
GCAGCACTGCAGCACGGTCGCCACACACGCCTGCCCCGTCTGTCACGTAA
CGTTCACATCGATGGCGGAGTTCCGGGACCACATCGACAGCCACGTGGCA
AAGGGTGAGACTCCGTGGCACTGCGCGGTGTGCAACACGTACCACGAGCA
GCAGACCCGCCTGGTGAAGCACGCCAAGATCCACTCCGACCAGACCCCGT
TTCTCTGCCCGCACTGCGGGAAGGGCTTCAAGGACGTCGCGCACCTACAG
GTCCATGAGAACATCCACACCAGGGCAAAGGAGTACGCCTGTAAGGACTG
TGGCCGGGTCTTCGCACAGTACTCCAGCATGAAGCGCCACGAGCTGACGC
ACAACAAGAGCCAGCCGCACCAGTGCCCGTTCTGCGAACGCAGGGTTCTC
GTGTGCGGTAAGATGTCAAAGTTCCTGAGCCAGTACACGCGGCACGTCGG
GCAGCACTGCAGCACGGTCGCCACACACGCCTGCCCCGTCTGTCACGTAA
CGTTCACATCGATGGCGGAGTTCCGGGACCACATCGACAGCCACGTGGCA
AAGGGTGAGACTCCGTGGCACTGCGCGGTGTGCAACACGTACCACGAGCA
GCAGACCCGCCTGGTGAAGCACGCCAAGATCCACTCCGACCAGACCCCGT
TTCTCTGCCCGCACTGCGGGAAGGGCTTCAAGGACGTCGCGCACCTACAG
GTCCATGAGAACATCCACACCAGGGCAAAGGAGTACGCCTGTAAGGACTG
TGGCCGGGTCTTCGCACAGTACTCCAGCATGAAGCGCCACGAGCTGACGC
ACAACAAGAGCCAGCCGCACCAGTGCCCGTTCTGCGAACGCAGGGTTCTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96970gene:BL96970Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96970_cuf5transcript:BL96970_cuf5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96970_cuf5-E1BL96970_cuf5-E1-1564476830-211566Branchiostoma lanceolatumexon
BL96970_cuf5-E2BL96970_cuf5-E2-1564476830-211568Branchiostoma lanceolatumexon
BL96970_cuf5-E3BL96970_cuf5-E3-1564476830-211570Branchiostoma lanceolatumexon
BL96970_cuf5-E4BL96970_cuf5-E4-1564476830-211572Branchiostoma lanceolatumexon
BL96970_cuf5-E5BL96970_cuf5-E5-1564476830-211575Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:526827..529925 +
Properties
Property NameValue
Transcript idBL96970_cuf5
Biotypeprotein_coding