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transcript:BL96969_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96969_cuf1
Unique Nametranscript:BL96969_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96969_cuf1

>transcript:BL96969_cuf1-protein ID=transcript:BL96969_cuf1-protein|Name=transcript:BL96969_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=282bp
DSESHTCQKCRRQFRQAHHFKKHVKTCTSAKTKTRRTYGSFTCKTCEKVF
SRSDWLRRHQEVHSKERPFRCKLCSASYKRRDALQRHELIQHTWPDEQVK
KAAASEARCVKCGKVYMAGEIPRHMAMSHSYNPDSENISDSENMSHSTPS
EQPHADAELSHSAQLGQQTTDPDSENISHFTRSEQLQSGLDVAKFSNFAP
SGQSQADLGPTFENKLSTTNSDMVEGEAHKIYPALGIGQRITESEQKQVL
VNTDSGNNHCELIDETKGKQLAPAQQDTDSQS
Run BLAST on NCBI

mRNA from alignment at Sc0000044:519602..522224+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96969_cuf1 ID=transcript:BL96969_cuf1|Name=transcript:BL96969_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2623bp|location=Sequence derived from alignment at Sc0000044:519602..522224+ (Branchiostoma lanceolatum)
GACTCCGAGTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGC CCACCACTTTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGA CGCGGCGCACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTC AGCCGCTCTGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCG CCCGTTTAGGTTGGTCAAATTAAACACAACCTGTAGAATAGGCGTCATGA TCATGATGGTTGATGTTACATAAACGTAAGACTGTTATTGTTAGGGAAGT TATAATCGGTGATGATTGTATTACTAGTATCACCGGTACCTGGGACCCAC CCTCCCCCCCACCCAAAGGACAATAACTGTTCCTATGGTGTTGTCTTACC ATAGGAACCTTCCCATCTTGTTTTACATTTCAATTCCTCTTATGCATGAC TGTGTGATTTGCCATGTAAAACCGTTTTTTCTAGTTATTGTAAATAAGTA CTGGTTAGTTCTGCTAGTTCATATTAGTGACGCTGAAGATCTAGAAGAGT GATGGATGTCACTCGAAACTTCCGGAAATAAATCTCCGAATTCTTATCCA GTTGTAGAATCTGAATTCTCTTTATTAACATACGTACTACAAAAAACACA ATGTAGTATTAGCGTTTGTATTGTTGAAGCAGAGTGTTTCCGTGTGTCGT TTACAAAACTATGGCAACTTCATTGCAAATATAATGATAATCAACAGTAA ATTATCTCGTATTTCATCCCTCTATAATACATGTACAGCTGTCAGGAGGC ATGTAAGCCTTGTTGTTGTTGATATGAACCAATAAACTAGTCTACTACTG ACTACAGATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGCTA CAGCGGCACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTAACTCC ACACCTTTGTTTCTTTGTTTATCACAGGTGTTTTTTTTTTAGTCAGAATT GCCCTGATGAAAGTGACAGGCGGTCATCGAAATGTCACAGTGCATAAAGC AGCTGGTTGTGTACGAAATTTGTTGTTGTTGTTATTCATCACACAGGTCT GCCTGCTCATCTTTGTCTGGTGTTGTGTTGGCCGGGTAACGGTTAGGGTG TTTGGTCTGGAGCCCAAAGGTCCTGGGTTCAAATCCCTGAAGCCTATAAA TAGGCCGCCGATGTTGTGTTCTCCGGAAAGGCTCTTATTTGAATTATTAT TTATGATTGTGTTAATACATAAAGTTTATGTGAAGTTTATTTTGTCGTAA CAATTTACCCGTGACTCCTGCCCCTCCACTTCAACCTTGTTGAAAAGTGG CCCGTGTGGCTGAACAAGCATTCGAAAGGATATAAAGGCTTTGACTTGAC TTGACTTGACACGACTTTACTCACAACACGGTACCTGACGTTGGTTGGGG TCAGGTAAAGGCTTCGCCTTCCAACTGCAATCATCATCATCAGATATTGG AGCTTTCTTTTAACACAACCAGTAACTTTCACCTGCTGACGTTTCAGTGT CTATCAGACACCTTCCTCAGAGCTTCTGACTTAAGTGCTTCTTCTCACCG CTATAAGTAGCTGATGTAGGGCGAGTTTGTTTGGCAAGAATGCAATCCCG AACGTGGCTAATCATCATCATCAGTCCACTGGCTGCCAATTGCAATACTG TGCCCTATGTATATCATGTATGAATAGACACAGTGAATAACAACCCACCT ACTGCCTCAATAAGGCCATCAATCAATAAATCAATCAATCAAAATTGTTT ATTTATTATAAAAAGGCATTGCAGCCAAAGGCTGAATTGTGCCCTCTGTA CATATTGCACTTTGTTTTCACCATCAAGACATTACACAAATCATTTAAAA TTATTTACAGTGGTATTAGAACAGTTTCAATGCATTGGCATTAAGTTCGT CTATCTGATATCCATTTGCTTATCATATAGACAGTTCAATCCGTTTCATT TTGTAGCATTCAGGAGCGGTAACAAAGATAGGCCATGGGACTGCCTTTAC CTTAACCATCTTGTGTTGCAGGTGAAGAAAGCAGCAGCTAGCGAGGCCAG GTGTGTGAAGTGCGGGAAGGTGTACATGGCAGGGGAGATCCCACGTCACA TGGCCATGTCGCACTCTTACAACCCGGACTCGGAAAACATTTCGGACTCT GAAAATATGTCGCACTCCACACCATCAGAGCAGCCACACGCTGACGCAGA ATTGTCACACTCTGCACAATTGGGACAACAAACAACTGACCCGGACTCTG AAAATATTTCTCACTTCACACGATCAGAACAACTACAGAGCGGCCTAGAC GTTGCAAAATTTTCAAACTTTGCACCATCAGGACAGTCACAAGCAGATCT AGGGCCTACCTTTGAAAACAAGCTCAGCACGACAAACTCAGATATGGTGG AGGGTGAAGCGCACAAGATATATCCAGCTTTAGGGATTGGACAACGCATC ACGGAGTCGGAACAAAAACAGGTACTAGTAAATACCGACTCAGGAAACAA TCATTGTGAGCTGATAGATGAAACAAAAGGCAAGCAACTAGCCCCTGCGC AGCAAGACACAGACTCACAAAGC

Coding sequence (CDS) from alignment at Sc0000044:519602..522224+

>transcript:BL96969_cuf1 ID=transcript:BL96969_cuf1|Name=transcript:BL96969_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2538bp|location=Sequence derived from alignment at Sc0000044:519602..522224+ (Branchiostoma lanceolatum)
GACTCCGAGTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGC
CCACCACTTTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGA
CGCGGCGCACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTC
AGCCGCTCTGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCG
CCCGTTTAGATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGC
TACAGCGGCACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTGAAG
AAAGCAGCAGCTAGCGAGGCCAGGTGTGTGAAGTGCGGGAAGGTGTACAT
GGCAGGGGAGATCCCACGTCACATGGCCATGTCGCACTCTTACAACCCGG
ACTCGGAAAACATTTCGGACTCTGAAAATATGTCGCACTCCACACCATCA
GAGCAGCCACACGCTGACGCAGAATTGTCACACTCTGCACAATTGGGACA
ACAAACAACTGACCCGGACTCTGAAAATATTTCTCACTTCACACGATCAG
AACAACTACAGAGCGGCCTAGACGTTGCAAAATTTTCAAACTTTGCACCA
TCAGGACAGTCACAAGCAGATCTAGGGCCTACCTTTGAAAACAAGCTCAG
CACGACAAACTCAGATATGGTGGAGGGTGAAGCGCACAAGATATATCCAG
CTTTAGGGATTGGACAACGCATCACGGAGTCGGAACAAAAACAGGTACTA
GTAAATACCGACTCAGGAAACAATCATTGTGAGCTGATAGATGAAACAAA
AGGCAAGCAACTAGCCCCTGCGCAGCAAGACACAGACTCACAAAGCGACT
CCGAGTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGCCCAC
CACTTTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGACGCG
GCGCACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTCAGCC
GCTCTGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCGCCCG
TTTAGATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGCTACA
GCGGCACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTGAAGAAAG
CAGCAGCTAGCGAGGCCAGGTGTGTGAAGTGCGGGAAGGTGTACATGGCA
GGGGAGATCCCACGTCACATGGCCATGTCGCACTCTTACAACCCGGACTC
GGAAAACATTTCGGACTCTGAAAATATGTCGCACTCCACACCATCAGAGC
AGCCACACGCTGACGCAGAATTGTCACACTCTGCACAATTGGGACAACAA
ACAACTGACCCGGACTCTGAAAATATTTCTCACTTCACACGATCAGAACA
ACTACAGAGCGGCCTAGACGTTGCAAAATTTTCAAACTTTGCACCATCAG
GACAGTCACAAGCAGATCTAGGGCCTACCTTTGAAAACAAGCTCAGCACG
ACAAACTCAGATATGGTGGAGGGTGAAGCGCACAAGATATATCCAGCTTT
AGGGATTGGACAACGCATCACGGAGTCGGAACAAAAACAGGTACTAGTAA
ATACCGACTCAGGAAACAATCATTGTGAGCTGATAGATGAAACAAAAGGC
AAGCAACTAGCCCCTGCGCAGCAAGACACAGACTCACAAAGCGACTCCGA
GTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGCCCACCACT
TTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGACGCGGCGC
ACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTCAGCCGCTC
TGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCGCCCGTTTA
GATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGCTACAGCGG
CACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTGAAGAAAGCAGC
AGCTAGCGAGGCCAGGTGTGTGAAGTGCGGGAAGGTGTACATGGCAGGGG
AGATCCCACGTCACATGGCCATGTCGCACTCTTACAACCCGGACTCGGAA
AACATTTCGGACTCTGAAAATATGTCGCACTCCACACCATCAGAGCAGCC
ACACGCTGACGCAGAATTGTCACACTCTGCACAATTGGGACAACAAACAA
CTGACCCGGACTCTGAAAATATTTCTCACTTCACACGATCAGAACAACTA
CAGAGCGGCCTAGACGTTGCAAAATTTTCAAACTTTGCACCATCAGGACA
GTCACAAGCAGATCTAGGGCCTACCTTTGAAAACAAGCTCAGCACGACAA
ACTCAGATATGGTGGAGGGTGAAGCGCACAAGATATATCCAGCTTTAGGG
ATTGGACAACGCATCACGGAGTCGGAACAAAAACAGGTACTAGTAAATAC
CGACTCAGGAAACAATCATTGTGAGCTGATAGATGAAACAAAAGGCAAGC
AACTAGCCCCTGCGCAGCAAGACACAGACTCACAAAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96969gene:BL96969Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96969_cuf1-E1BL96969_cuf1-E1-1564476830-211557Branchiostoma lanceolatumexon
BL96969_cuf1-E2BL96969_cuf1-E2-1564476830-211559Branchiostoma lanceolatumexon
BL96969_cuf1-E3BL96969_cuf1-E3-1564476830-211561Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96969_cuf1transcript:BL96969_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:519602..522224 +
Properties
Property NameValue
Transcript idBL96969_cuf1
Biotypeprotein_coding