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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96966_cuf3 >transcript:BL96966_cuf3-protein ID=transcript:BL96966_cuf3-protein|Name=transcript:BL96966_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=199bp
LTCECNAPVCAAVVCELDCPGGLAKDAYGCELCQCSLFDDGFCTHHGQHY
KNGQKFLSDCEGEGGCCEMVCRCMDNHVTCETICPAVVMTTSAECPSPVL
LDIPEVCCQQYGCNDDAKANVRRDLGLVMAQLTAGDCVSINDTCDLHCLD
GFAKNRLGCDICQCSTVDPGSCISNGNVYRNGQSFIHMDNCDQRCVCMD Run BLAST on NCBI mRNA from alignment at Sc0000044:1096109..1099531- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96966_cuf3 ID=transcript:BL96966_cuf3|Name=transcript:BL96966_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3423bp|location=Sequence derived from alignment at Sc0000044:1096109..1099531- (Branchiostoma lanceolatum)
GTCTGACATGCGAGTGTAACGCGCCAGGTAAGCATGGGGATTTAGTCAAA
CCTGACTATTACGACCACTTTGACATGGGAGTGTAACGTGCCAGGTGAGA
ACGGAAATAGTCAAACCTGGCTATAATGACCACTATGACATGCGAGTGTT
ACGCACCAGGTAAGCACGGAAATACAGTCAAACCTGGCTATAACGACCAC
TGTGACATGCGAGTGTTACGCACCAGGTAAGAACGGAAATACAGTCAAAC
CTGACTATAACGAGCACTTTGACATGGGAGTGTAACGTGCGAGGTGAGCA
CGGAAATACAGTCAAACCTTACTTTGGCGACTACTCATATACATAGATTA
TTGTTACAATAGACAGATAGGTACTACAGAAATATTAAGGAAATGGGTCA
ATGGGGAAATAATCTTGAAGTTTAGGAACCCAAAAAGGCTGGCAACAATG
GCCAGGGGACCACTGGTATATGTACGAATGAGATCATACCAAAGATTGAA
CATACTGCTAAAAGCAAAGAATTCAGCAGCTTGTTAGCAAGATTGCGGTA
CTTGATCATTGACACATCATCACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACCCATACCAGTGTGTATTGGTGTGTGTGTGTGTGTGTGTGTGTCCTGA
TGTATTGCTTGGTTTTAAATGAAGCCATCAGTCTATAGAAAAAAATGCAC
ACAAAATACATATGTTCCATCTATCACTGAAAGAATATTGATTTTCTCGT
TTAAAATGCCGATCATGAATAAATGAAAACGGGGGGAAAGAAAATATCTA
AAAGAGACACCATGCGATTTGTATTGGTTCTGCAGTGTGCGCAGCGGTGG
TTTGTGAGCTGGACTGTCCGGGAGGCCTCGCGAAGGACGCCTACGGGTGC
GAGCTGTGCCAGTGTTCGCTGTTTGGTAAGGCCATTGTATTTTCTTAATG
TTTATTCGCGCATAACAAAGAAACAAAGAAAACCTTTTAATCCTCTTTCG
CCTGTGCGCTGTTAATTTCGGCTGCTTTCAGCTATGAGCAACTAAACTAG
TGAATATTTTTTACAACAATTAGGTCATGTTATATCCATCTAAGAAATGC
CAAGTAGGTACCCCTCTAAGCAATGAGGCTGATGCTACCTTATAACGTGG
TCAAGGCACATACTCGATCACGGGACCCCCACTTTACGTCCCTTCTGAAA
GACGAATGCAGCTCCAACCAGGCTGCTTTTCCCCTGGATTTGAACCGGTC
TGCCAGTTACAAACTAATTGGAACCAGTAGCTCAACTGTGAAGATGTTAT
AAATTAAATTACTGCGTCATCATTATATTTGAGATTTAGACAAATGCCAA
ACGTTTGGTTTTATTTCAGACGACGGGTTCTGCACACATCACGGGCAGCA
CTACAAGAACGGGCAGAAGTTTCTGTCCGACTGTGAGGGGGAGGGGGGCT
GCTGCGAGATGGTCTGCCGGTGCATGGACAACCACGTCACCTGCGAGACC
ATCTGCCCTGCTGTTGTTATGGTTAGACAATAGGCTACACATACCTTTAC
ACTTACAACAAATAGATATCCATAATGTTTGTATACTCCATTTGCAATGT
GAAGATGGTTATTTCAGCTGTGATACCACCTTGCCTGTTGCCCCTGTTGA
ACGTAATAGAAAACAAATGCCTTTTCTACACTTAAAATGATGTAAAAGTG
GTATGGGTTTCTTCAGACACAACCAAGAGGTATCTAACTTTCAACGTAAG
TGGACCGTCTTCCACCTTCATCAAGGCGATACTGAATGATTCCTCTTTGC
ACTGCAGCTAGGTAGGCAGGTAGGTAGATAGGTGTCGCTGCAATATAAAG
AGAATGAGGCCACACACATTGTATCCCCTCATCGCAGTTCTTAGTGTGGA
TTTATATCTATCCAGACTGCCTCCTTTATCAAGCGAATGTCGCTAGAAAG
GGAATATTTAGAACTGTTGTCGTATATTTTTAAATGAGTTATTTTATGAG
TTTTTTATTTCATTTTCCTTTTGGAATTTTCTTGGATATAAGGAAAAGTA
TGTATGTATGTAATGACAAAAAGGTGTCCATACCAATTAATTGTTGATGT
TTCCCCCCGTGCTTCAGACCACCAGTGCTGAATGCCCGTCCCCTGTTCTA
CTGGACATCCCGGAAGTGTGCTGCCAGCAGTATGGCTGTAACGATGACGC
GAAGGCAAACGTCAGGAGGGACTTGGGCCTGGTCATGGCACAACGTAAGA
ATGCTAATGCAAAATAGATAATGTAAAATAGCCATATGTTTAGACAAAAG
CTATACATATCCATACGTTACGTTAGCATTAAACGAAATCTGATAAATTA
CATAATGAGAAATAAAATGTTTAACAACTTATAATTGGCCATGTAGAAAC
TTTGCTAATACAGTAATCAGTGCCACCAATCTATAGCATATTTGATAATT
GTCACGAAATTTGCCATTTCGGAAAAATACATTTTTCCTTTCTATTCGCC
TGAAGATAGAAATATGATAGTCTTCTATGGCAGATCCCCCAACATGATTT
ACATGCAAGACACAATTCTGGCAATAAAAGAATAATCCGGGTCTCCTTGC
TGATTTCTTTTGGAACATTATAGAGGCCATTTGCTTGGTACAAATATGGG
CGATGGCAATATATGGACATAATTTTTCTTTCATTGAATAACCACCAGGG
CTAACGTTTACTGAAAACTTATCTTAGTCGACCTGCCAACTGTATAGTAA
ACAGCAGTATCTTGGATTCATACCTATGTAGTGACAGCAGGCGACTGTGT
GAGTATTAACGACACGTGTGATCTCCACTGTCTGGACGGGTTCGCCAAGA
ACCGACTCGGCTGCGACATTTGTCAGTGTTCCACTGTCGGTAAGGGGCAC
CCCTCTTTTCCCATTTTTAGTATCATTCGATTGGTATATATGTAGCATAT
ATTTATTGTGACTTCTTTATTTGTTTATAAACGGATGATAAATAAAATGT
CCCTTTTCTCGAGGGTTTGTCAATCTTATGCACCTGGTCTCAATCATAAT
ACCATTGTCTTTAGACGTCTTTGTTCAACATATACTTGTCGGTTTGAACG
CTAGCGTTGCTATCTAAATAATATCAATTTAGATCATGCAATATAAACCC
TGTAAAAATTGCGGTAAATATCGTTCCTCTCTACTATCAAAAAGGCTCGA
ATGGCAAAACTTTGCAATGGTTTTTATTTTCGTGTTTATTACCTTTACAA
GAACCTTTTGTTTTCTAATACTATAGACCCAGGGTCCTGTATCAGTAACG
GTAACGTGTACAGGAATGGGCAGTCGTTCATCCACATGGACAACTGTGAT
CAGCGATGTGTCTGCATGGATGG Coding sequence (CDS) from alignment at Sc0000044:1096109..1099531- >transcript:BL96966_cuf3 ID=transcript:BL96966_cuf3|Name=transcript:BL96966_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=3582bp|location=Sequence derived from alignment at Sc0000044:1096109..1099531- (Branchiostoma lanceolatum)
CTGACATGCGAGTGTAACGCGCCAGTGTGCGCAGCGGTGGTTTGTGAGCT
GGACTGTCCGGGAGGCCTCGCGAAGGACGCCTACGGGTGCGAGCTGTGCC
AGTGTTCGCTGTTTGACGACGGGTTCTGCACACATCACGGGCAGCACTAC
AAGAACGGGCAGAAGTTTCTGTCCGACTGTGAGGGGGAGGGGGGCTGCTG
CGAGATGGTCTGCCGGTGCATGGACAACCACGTCACCTGCGAGACCATCT
GCCCTGCTGTTGTTATGACCACCAGTGCTGAATGCCCGTCCCCTGTTCTA
CTGGACATCCCGGAAGTGTGCTGCCAGCAGTATGGCTGTAACGATGACGC
GAAGGCAAACGTCAGGAGGGACTTGGGCCTGGTCATGGCACAACTGACAG
CAGGCGACTGTGTGAGTATTAACGACACGTGTGATCTCCACTGTCTGGAC
GGGTTCGCCAAGAACCGACTCGGCTGCGACATTTGTCAGTGTTCCACTGT
CGACCCAGGGTCCTGTATCAGTAACGGTAACGTGTACAGGAATGGGCAGT
CGTTCATCCACATGGACAACTGTGATCAGCGATGTGTCTGCATGGATCTG
ACATGCGAGTGTAACGCGCCAGTGTGCGCAGCGGTGGTTTGTGAGCTGGA
CTGTCCGGGAGGCCTCGCGAAGGACGCCTACGGGTGCGAGCTGTGCCAGT
GTTCGCTGTTTGACGACGGGTTCTGCACACATCACGGGCAGCACTACAAG
AACGGGCAGAAGTTTCTGTCCGACTGTGAGGGGGAGGGGGGCTGCTGCGA
GATGGTCTGCCGGTGCATGGACAACCACGTCACCTGCGAGACCATCTGCC
CTGCTGTTGTTATGACCACCAGTGCTGAATGCCCGTCCCCTGTTCTACTG
GACATCCCGGAAGTGTGCTGCCAGCAGTATGGCTGTAACGATGACGCGAA
GGCAAACGTCAGGAGGGACTTGGGCCTGGTCATGGCACAACTGACAGCAG
GCGACTGTGTGAGTATTAACGACACGTGTGATCTCCACTGTCTGGACGGG
TTCGCCAAGAACCGACTCGGCTGCGACATTTGTCAGTGTTCCACTGTCGA
CCCAGGGTCCTGTATCAGTAACGGTAACGTGTACAGGAATGGGCAGTCGT
TCATCCACATGGACAACTGTGATCAGCGATGTGTCTGCATGGATCTGACA
TGCGAGTGTAACGCGCCAGTGTGCGCAGCGGTGGTTTGTGAGCTGGACTG
TCCGGGAGGCCTCGCGAAGGACGCCTACGGGTGCGAGCTGTGCCAGTGTT
CGCTGTTTGACGACGGGTTCTGCACACATCACGGGCAGCACTACAAGAAC
GGGCAGAAGTTTCTGTCCGACTGTGAGGGGGAGGGGGGCTGCTGCGAGAT
GGTCTGCCGGTGCATGGACAACCACGTCACCTGCGAGACCATCTGCCCTG
CTGTTGTTATGACCACCAGTGCTGAATGCCCGTCCCCTGTTCTACTGGAC
ATCCCGGAAGTGTGCTGCCAGCAGTATGGCTGTAACGATGACGCGAAGGC
AAACGTCAGGAGGGACTTGGGCCTGGTCATGGCACAACTGACAGCAGGCG
ACTGTGTGAGTATTAACGACACGTGTGATCTCCACTGTCTGGACGGGTTC
GCCAAGAACCGACTCGGCTGCGACATTTGTCAGTGTTCCACTGTCGACCC
AGGGTCCTGTATCAGTAACGGTAACGTGTACAGGAATGGGCAGTCGTTCA
TCCACATGGACAACTGTGATCAGCGATGTGTCTGCATGGATCTGACATGC
GAGTGTAACGCGCCAGTGTGCGCAGCGGTGGTTTGTGAGCTGGACTGTCC
GGGAGGCCTCGCGAAGGACGCCTACGGGTGCGAGCTGTGCCAGTGTTCGC
TGTTTGACGACGGGTTCTGCACACATCACGGGCAGCACTACAAGAACGGG
CAGAAGTTTCTGTCCGACTGTGAGGGGGAGGGGGGCTGCTGCGAGATGGT
CTGCCGGTGCATGGACAACCACGTCACCTGCGAGACCATCTGCCCTGCTG
TTGTTATGACCACCAGTGCTGAATGCCCGTCCCCTGTTCTACTGGACATC
CCGGAAGTGTGCTGCCAGCAGTATGGCTGTAACGATGACGCGAAGGCAAA
CGTCAGGAGGGACTTGGGCCTGGTCATGGCACAACTGACAGCAGGCGACT
GTGTGAGTATTAACGACACGTGTGATCTCCACTGTCTGGACGGGTTCGCC
AAGAACCGACTCGGCTGCGACATTTGTCAGTGTTCCACTGTCGACCCAGG
GTCCTGTATCAGTAACGGTAACGTGTACAGGAATGGGCAGTCGTTCATCC
ACATGGACAACTGTGATCAGCGATGTGTCTGCATGGATCTGACATGCGAG
TGTAACGCGCCAGTGTGCGCAGCGGTGGTTTGTGAGCTGGACTGTCCGGG
AGGCCTCGCGAAGGACGCCTACGGGTGCGAGCTGTGCCAGTGTTCGCTGT
TTGACGACGGGTTCTGCACACATCACGGGCAGCACTACAAGAACGGGCAG
AAGTTTCTGTCCGACTGTGAGGGGGAGGGGGGCTGCTGCGAGATGGTCTG
CCGGTGCATGGACAACCACGTCACCTGCGAGACCATCTGCCCTGCTGTTG
TTATGACCACCAGTGCTGAATGCCCGTCCCCTGTTCTACTGGACATCCCG
GAAGTGTGCTGCCAGCAGTATGGCTGTAACGATGACGCGAAGGCAAACGT
CAGGAGGGACTTGGGCCTGGTCATGGCACAACTGACAGCAGGCGACTGTG
TGAGTATTAACGACACGTGTGATCTCCACTGTCTGGACGGGTTCGCCAAG
AACCGACTCGGCTGCGACATTTGTCAGTGTTCCACTGTCGACCCAGGGTC
CTGTATCAGTAACGGTAACGTGTACAGGAATGGGCAGTCGTTCATCCACA
TGGACAACTGTGATCAGCGATGTGTCTGCATGGATCTGACATGCGAGTGT
AACGCGCCAGTGTGCGCAGCGGTGGTTTGTGAGCTGGACTGTCCGGGAGG
CCTCGCGAAGGACGCCTACGGGTGCGAGCTGTGCCAGTGTTCGCTGTTTG
ACGACGGGTTCTGCACACATCACGGGCAGCACTACAAGAACGGGCAGAAG
TTTCTGTCCGACTGTGAGGGGGAGGGGGGCTGCTGCGAGATGGTCTGCCG
GTGCATGGACAACCACGTCACCTGCGAGACCATCTGCCCTGCTGTTGTTA
TGACCACCAGTGCTGAATGCCCGTCCCCTGTTCTACTGGACATCCCGGAA
GTGTGCTGCCAGCAGTATGGCTGTAACGATGACGCGAAGGCAAACGTCAG
GAGGGACTTGGGCCTGGTCATGGCACAACTGACAGCAGGCGACTGTGTGA
GTATTAACGACACGTGTGATCTCCACTGTCTGGACGGGTTCGCCAAGAAC
CGACTCGGCTGCGACATTTGTCAGTGTTCCACTGTCGACCCAGGGTCCTG
TATCAGTAACGGTAACGTGTACAGGAATGGGCAGTCGTTCATCCACATGG
ACAACTGTGATCAGCGATGTGTCTGCATGGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:1096109..1099531 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96966_cuf3 |
| Biotype | protein_coding |
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