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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96964_cuf2 >transcript:BL96964_cuf2-protein ID=transcript:BL96964_cuf2-protein|Name=transcript:BL96964_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=276bp
PVGLRPEYPGQICPRPTDVHARVIATQQEASLTGETFVYYDTANGFACRN
QQQRDGRCLDYEVRFCCPDPYCPSGDPFLSGWFCGRGGERCPAGYYCEIE
PADRWAVCCPQEVPPPEPKEWACSIDLVLVVDLSSSLTEPGFFSLKRFII
DFILCFIELCVDAQIGIITYDCVPTAYLPLCTYPPDDSTLLDRVNCLMYT
GRGGSRTGHAISFMAETSDFRDGFPHAAVVMTDGSSDDDSAGQADAARAS
GIDLYAVGTGLPFLQNMAALEAIAGG Run BLAST on NCBI mRNA from alignment at Sc0000044:260636..264850+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96964_cuf2 ID=transcript:BL96964_cuf2|Name=transcript:BL96964_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4215bp|location=Sequence derived from alignment at Sc0000044:260636..264850+ (Branchiostoma lanceolatum)
ACCCAGGTCGGTATATGCATGCTTAAAGGTGGTGTATTCTCCTTCTTTAC
GCACCAATGGACCTCATGGCTAAACAGTTCTATGTGCAAACGACAGTCTC
GATCACACTGGTCACATCTGTAATCTGACTCAAGACTGTTGCAAAGTTCT
TTTCTAAGGGTCCGCTTATATTCTTCCCTGTGCACCAGTCTTGCCTCCTC
TAGCACCTCTTATACGGGTACGTAAAGAGTGCATTTCCGTAGGATCTGAT
AAACCCGCTGTTTCCGGTGTTACAGTTGTCTTTTCTTCAACATATAGATA
TCTTGATAATCTCCATATTCTCTTAAACCACTGCCTCTGTGACTTCACCT
TATGCAGATAGAACACATGGCAGGGGAACGTAAGTCGCAGAACGTCTATG
GCGCCCCCCGTCTCTGACGATTTGAATTTGTGTTGTTCTAGCCGGCCTTC
GCCCGGAGTACCCCGCACAACCTGTAATGGATTTATCCGCGTTCCAGAAA
TAATGCTTGCATGTTTGTTTCCGTGCTGTTTCAGTCGGCCTCCGCCCGGA
GTACCCGGGCCAGATCTGCCCCCGGCCCACTGACGTGCACGCCCGCGTCA
TCGCCACGCAACAGGAGGCCTCTCTCACCGGGGAAACCTTCGTCTACTAC
GACACGGCAAACGGGTTCGCCTGCAGGAACCAGCAGCAGAGGGACGGGCG
CTGCCTGGACTACGAGGTTCGCTTCTGTTGCCCCGGTAGGTACCGTTTTA
TCTGAGCCACAGCAATTTACTGCCCCTACACAATGTTCTAGTATCTGTCT
ACTGACTTTATCAGTTACCGATCTCATAAATCCTCTGCAAACCATTGAGA
TGAAAATGTTAGCATCACATGACTAGAATAAAGTTTACCTGCTTATGTCT
TCCCCTCAGATCCTTACTGTGGCTCCGGAGAAAGGTTCCTTGGAGCTGGA
TCCATAAGCCATTGAGAAGTAAAACTTGCCTGTTTTTGTTGTCTCTACAG
AATTTTACTGGCATTCTGGAAACCCGTACCAGTGGCCGGGACCCTGGAGA
CATAAAGAAGCAGATATTAACTGTTTTTACTCTCCACAGCCCCTTTTTGT
CCTTCCTTATCCGTTGCCGAAACCCTTTAGACCTGGAGAAGTAAATGTTT
ACCTACTTTTGTCGTCTCCACAGACCCTTGATTCCTTATCCGTTGCCGAA
ACCCTTTAGACCTGGAGAAGTAAATGTTTACCTACTTTTGTCGTCTCCAC
AGACCCTTGATTCCTTATCCGTGGCCGAAACCCTTTAGACCTTGTAACGC
AATGTTCACCTTTTTGTCGTCTTCACAGACCCATACTGTCCGTCCGGAGA
CCCTTTCCTGTCCGGATGGTTCTGCGGAAGGGGCGGCGAGAGGTGCCCTG
CAGGTTACTACTGCGAGATCGAGCCCGCCGACCGCTGGGCCGTCTGCTGC
CCGCAGGAAGGTAACCTCCTCGCCCGACAGTCCAAACACTCGGCTGTGAT
CTGTACCTTCGGTCTTAACTAATGCTGCAAACTCTGCTGTATGGCACATT
TCAATCAGATCAACCACTGTAATGAATTCCTTCTATGAGCCTGGAACTTC
ATAAGAAACTGCAGTGGACTTCAGCGCAGCGCAGGATTTAACCTTAGTAA
TTGATGGAAACTATGCATTGCGCATGATGCATTGGGGATGTTTTGGTTGA
TATGATATGATATGATACAATATAATATGATGTGAAAAGATATTATATGA
TAAGATATGATAAGATAAGGCATCTTTATCACACACATGATTCTGACATG
AACATTTTCCAGTGCCTCCCCCGGAGCCGAAAGAGTGGGCGTGCTCCATA
GACCTGGTGCTGGTGGTGGATCTCTCCTCCAGCCTGACGGAACCCGGCTT
CTTCAGCCTCAAACGCTTCATCATCGACTTCATCCTCTGCTTCATAGAGC
TGTGCGTGGACGCCCAGGTGAGCGTGTGTGTGTGTGTGTGTGTCTGTGTG
TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTG
TGTGTGTGTGTGTGTGTGTGTTTACGCTCTGGTGAGACATAGATGTGTGT
GGATGCCCAGGTGAGTTATACATGTGTTCGTGTATTTCAGATAAATGCAT
TGACACTGAATTTTTAGTTAGTTTAGAGGAAAGAAGTGCGTGATGATTGT
CAAGCTGAAGCATTAGTTGTTCTGGGGAATCCAACCATAATTGCGTACAC
TGAACACCTAGGCAAGCTCGTTCACCTGAAAATACCCACTATTCAAAAGA
ACATGATTCTTGTCCAAACTGTTCCGTAGATCGGAATCATCACGTACGAC
TGCGTGCCGACCGCGTACCTGCCGCTGTGCACCTACCCCCCGGACGACTC
GACCCTCCTGGACCGAGTGAACTGCCTGATGTACACGGGGCGCGGCGGGA
GTCGGACCGGGCATGCAATCAGCTTCATGGCCGAAACGGTAGGATACCCA
CTAATGCTACGGTCCCAATGGCGATAAATATTCAGTTACGTTGTTACTAT
CGTTAATTTGATACGCTTTACTTCAGTCATATATTCAGGATTAGTTGTCA
CAAATTACATATTGAAACAGGAAGGCACAACCACACGCTTCTAGAACATA
GAGTTTGCCAATTTTGTGAGTTAAATCAAATAGAAGATGAGCGGCACTTC
ATTTTAGATTGTAAACTTTACGATATAGAAAGAAATGTTCTTTTCAAATG
TATTAATGAGAAATTCCCATGCTTTGAATATTTAAACGCAACGGATAAAT
TCATATTTTTGTTGCGTCTAGATAACCCTTGTATAAGAAACATGATCTGT
TCATACATCTACACATGTACAAAGAAGCGAGAAGAAGTTGACTTTACTAG
ATTAGCTTAGCTTATCCTTTTCTTCTACCATGTATGTTTACACAATGTAC
TGTACATATTTCACTGTATATGTCACTTAGATGTTAGTTTGGTTTGTGTT
AAACGACCTGTATCTAGCCCCTCGGGGCACGAACATACAATAAAGGTCTT
CAATCATCATCATCATTANGGTTTGTGTTAAACGACCTGTATCTAGCCCC
TCGGGGCACGAACATACAATAAAGGTCTTCAATCATCATTATCTTATTTA
TGTTACGTTTGTTCAGAAACTTGCTTAAGTTTGTTATTGTCTCTGTCTAT
TCTTCTCTAGTTTTTCTGTGGTGCTGTAAAATAAGTCTATGTACTTGAGT
GTAGCGCCACTATGTCCATGTCCATGTGTATCTTGTTTTCTGATAAAAAA
AATGGCGATGCTGTATTGACCTTCACTGTGGAGTGGGCTAGACCATTGAC
CAATACTAACACAGAAGCGTTTTGAAAAGTGTAAGCATTACGAAGATCTG
TTTGACCGTTTTGTGTGTGTTTTTCCCAGTCGGACTTCCGTGACGGGTTC
CCCCATGCAGCGGTGGTGATGACGGACGGAAGCGTAAGAAAAACTGGTCT
TATTTCAATCAAGAATGCATTCCTGTACCTACCTAAGTAGTACCTACCTA
GTACCTACCTAGTTCCTACCTAGTACCTACCTAGTACCTACTTAGTACCT
ATTTTATACCTATTTAGTACATACCTAGTACCTACCTAGTTCCTACCTAG
TACCTACCTAGTACCTACTTAGTACCTATTAAATACCTATTTAGTACCTT
CCTACCTAGTACCTACCTAGTACCTACCTAGTACCTACCTAGCACCTACC
TAGTCCCCCTTCCTCCCCCTTCCTCCCCCTTCCTCCTCCTCTTCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCATCCTTCCTCTTCTTCTTCTTCTTCTT
CTTCTTGTCTAATAACGTTTTCAGTCTGTTAATGGTAAAAACTCCCATTT
TCAGTTGTATTGCAATCATTGTGCGCTCTTTTCGAATACATGCTCTTCCT
CTCTCTTCCTCGGTTGACCCCCTTCTCTAGCATCCTTTACATGGATTAAG
AAGTTTTCATGCCTTGACAAACACATGCCGTTTCCTACAGTCGGATGATG
ACTCCGCCGGCCAAGCAGACGCGGCCCGGGCCTCAGGAATCGACCTGTAC
GCGGTGGGGACCGGACTGCCGTTCCTGCAGAACATGGCGGCCCTGGAGGC
CATCGCCGGTGGCGC Coding sequence (CDS) from alignment at Sc0000044:260636..264850+ >transcript:BL96964_cuf2 ID=transcript:BL96964_cuf2|Name=transcript:BL96964_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=5796bp|location=Sequence derived from alignment at Sc0000044:260636..264850+ (Branchiostoma lanceolatum)
CCAGTCGGCCTCCGCCCGGAGTACCCGGGCCAGATCTGCCCCCGGCCCAC
TGACGTGCACGCCCGCGTCATCGCCACGCAACAGGAGGCCTCTCTCACCG
GGGAAACCTTCGTCTACTACGACACGGCAAACGGGTTCGCCTGCAGGAAC
CAGCAGCAGAGGGACGGGCGCTGCCTGGACTACGAGGTTCGCTTCTGTTG
CCCCGACCCATACTGTCCGTCCGGAGACCCTTTCCTGTCCGGATGGTTCT
GCGGAAGGGGCGGCGAGAGGTGCCCTGCAGGTTACTACTGCGAGATCGAG
CCCGCCGACCGCTGGGCCGTCTGCTGCCCGCAGGAAGTGCCTCCCCCGGA
GCCGAAAGAGTGGGCGTGCTCCATAGACCTGGTGCTGGTGGTGGATCTCT
CCTCCAGCCTGACGGAACCCGGCTTCTTCAGCCTCAAACGCTTCATCATC
GACTTCATCCTCTGCTTCATAGAGCTGTGCGTGGACGCCCAGATCGGAAT
CATCACGTACGACTGCGTGCCGACCGCGTACCTGCCGCTGTGCACCTACC
CCCCGGACGACTCGACCCTCCTGGACCGAGTGAACTGCCTGATGTACACG
GGGCGCGGCGGGAGTCGGACCGGGCATGCAATCAGCTTCATGGCCGAAAC
GTCGGACTTCCGTGACGGGTTCCCCCATGCAGCGGTGGTGATGACGGACG
GAAGCTCGGATGATGACTCCGCCGGCCAAGCAGACGCGGCCCGGGCCTCA
GGAATCGACCTGTACGCGGTGGGGACCGGACTGCCGTTCCTGCAGAACAT
GGCGGCCCTGGAGGCCATCGCCGGTGGCCCAGTCGGCCTCCGCCCGGAGT
ACCCGGGCCAGATCTGCCCCCGGCCCACTGACGTGCACGCCCGCGTCATC
GCCACGCAACAGGAGGCCTCTCTCACCGGGGAAACCTTCGTCTACTACGA
CACGGCAAACGGGTTCGCCTGCAGGAACCAGCAGCAGAGGGACGGGCGCT
GCCTGGACTACGAGGTTCGCTTCTGTTGCCCCGACCCATACTGTCCGTCC
GGAGACCCTTTCCTGTCCGGATGGTTCTGCGGAAGGGGCGGCGAGAGGTG
CCCTGCAGGTTACTACTGCGAGATCGAGCCCGCCGACCGCTGGGCCGTCT
GCTGCCCGCAGGAAGTGCCTCCCCCGGAGCCGAAAGAGTGGGCGTGCTCC
ATAGACCTGGTGCTGGTGGTGGATCTCTCCTCCAGCCTGACGGAACCCGG
CTTCTTCAGCCTCAAACGCTTCATCATCGACTTCATCCTCTGCTTCATAG
AGCTGTGCGTGGACGCCCAGATCGGAATCATCACGTACGACTGCGTGCCG
ACCGCGTACCTGCCGCTGTGCACCTACCCCCCGGACGACTCGACCCTCCT
GGACCGAGTGAACTGCCTGATGTACACGGGGCGCGGCGGGAGTCGGACCG
GGCATGCAATCAGCTTCATGGCCGAAACGTCGGACTTCCGTGACGGGTTC
CCCCATGCAGCGGTGGTGATGACGGACGGAAGCTCGGATGATGACTCCGC
CGGCCAAGCAGACGCGGCCCGGGCCTCAGGAATCGACCTGTACGCGGTGG
GGACCGGACTGCCGTTCCTGCAGAACATGGCGGCCCTGGAGGCCATCGCC
GGTGGCCCAGTCGGCCTCCGCCCGGAGTACCCGGGCCAGATCTGCCCCCG
GCCCACTGACGTGCACGCCCGCGTCATCGCCACGCAACAGGAGGCCTCTC
TCACCGGGGAAACCTTCGTCTACTACGACACGGCAAACGGGTTCGCCTGC
AGGAACCAGCAGCAGAGGGACGGGCGCTGCCTGGACTACGAGGTTCGCTT
CTGTTGCCCCGACCCATACTGTCCGTCCGGAGACCCTTTCCTGTCCGGAT
GGTTCTGCGGAAGGGGCGGCGAGAGGTGCCCTGCAGGTTACTACTGCGAG
ATCGAGCCCGCCGACCGCTGGGCCGTCTGCTGCCCGCAGGAAGTGCCTCC
CCCGGAGCCGAAAGAGTGGGCGTGCTCCATAGACCTGGTGCTGGTGGTGG
ATCTCTCCTCCAGCCTGACGGAACCCGGCTTCTTCAGCCTCAAACGCTTC
ATCATCGACTTCATCCTCTGCTTCATAGAGCTGTGCGTGGACGCCCAGAT
CGGAATCATCACGTACGACTGCGTGCCGACCGCGTACCTGCCGCTGTGCA
CCTACCCCCCGGACGACTCGACCCTCCTGGACCGAGTGAACTGCCTGATG
TACACGGGGCGCGGCGGGAGTCGGACCGGGCATGCAATCAGCTTCATGGC
CGAAACGTCGGACTTCCGTGACGGGTTCCCCCATGCAGCGGTGGTGATGA
CGGACGGAAGCTCGGATGATGACTCCGCCGGCCAAGCAGACGCGGCCCGG
GCCTCAGGAATCGACCTGTACGCGGTGGGGACCGGACTGCCGTTCCTGCA
GAACATGGCGGCCCTGGAGGCCATCGCCGGTGGCCCAGTCGGCCTCCGCC
CGGAGTACCCGGGCCAGATCTGCCCCCGGCCCACTGACGTGCACGCCCGC
GTCATCGCCACGCAACAGGAGGCCTCTCTCACCGGGGAAACCTTCGTCTA
CTACGACACGGCAAACGGGTTCGCCTGCAGGAACCAGCAGCAGAGGGACG
GGCGCTGCCTGGACTACGAGGTTCGCTTCTGTTGCCCCGACCCATACTGT
CCGTCCGGAGACCCTTTCCTGTCCGGATGGTTCTGCGGAAGGGGCGGCGA
GAGGTGCCCTGCAGGTTACTACTGCGAGATCGAGCCCGCCGACCGCTGGG
CCGTCTGCTGCCCGCAGGAAGTGCCTCCCCCGGAGCCGAAAGAGTGGGCG
TGCTCCATAGACCTGGTGCTGGTGGTGGATCTCTCCTCCAGCCTGACGGA
ACCCGGCTTCTTCAGCCTCAAACGCTTCATCATCGACTTCATCCTCTGCT
TCATAGAGCTGTGCGTGGACGCCCAGATCGGAATCATCACGTACGACTGC
GTGCCGACCGCGTACCTGCCGCTGTGCACCTACCCCCCGGACGACTCGAC
CCTCCTGGACCGAGTGAACTGCCTGATGTACACGGGGCGCGGCGGGAGTC
GGACCGGGCATGCAATCAGCTTCATGGCCGAAACGTCGGACTTCCGTGAC
GGGTTCCCCCATGCAGCGGTGGTGATGACGGACGGAAGCTCGGATGATGA
CTCCGCCGGCCAAGCAGACGCGGCCCGGGCCTCAGGAATCGACCTGTACG
CGGTGGGGACCGGACTGCCGTTCCTGCAGAACATGGCGGCCCTGGAGGCC
ATCGCCGGTGGCCCAGTCGGCCTCCGCCCGGAGTACCCGGGCCAGATCTG
CCCCCGGCCCACTGACGTGCACGCCCGCGTCATCGCCACGCAACAGGAGG
CCTCTCTCACCGGGGAAACCTTCGTCTACTACGACACGGCAAACGGGTTC
GCCTGCAGGAACCAGCAGCAGAGGGACGGGCGCTGCCTGGACTACGAGGT
TCGCTTCTGTTGCCCCGACCCATACTGTCCGTCCGGAGACCCTTTCCTGT
CCGGATGGTTCTGCGGAAGGGGCGGCGAGAGGTGCCCTGCAGGTTACTAC
TGCGAGATCGAGCCCGCCGACCGCTGGGCCGTCTGCTGCCCGCAGGAAGT
GCCTCCCCCGGAGCCGAAAGAGTGGGCGTGCTCCATAGACCTGGTGCTGG
TGGTGGATCTCTCCTCCAGCCTGACGGAACCCGGCTTCTTCAGCCTCAAA
CGCTTCATCATCGACTTCATCCTCTGCTTCATAGAGCTGTGCGTGGACGC
CCAGATCGGAATCATCACGTACGACTGCGTGCCGACCGCGTACCTGCCGC
TGTGCACCTACCCCCCGGACGACTCGACCCTCCTGGACCGAGTGAACTGC
CTGATGTACACGGGGCGCGGCGGGAGTCGGACCGGGCATGCAATCAGCTT
CATGGCCGAAACGTCGGACTTCCGTGACGGGTTCCCCCATGCAGCGGTGG
TGATGACGGACGGAAGCTCGGATGATGACTCCGCCGGCCAAGCAGACGCG
GCCCGGGCCTCAGGAATCGACCTGTACGCGGTGGGGACCGGACTGCCGTT
CCTGCAGAACATGGCGGCCCTGGAGGCCATCGCCGGTGGCCCAGTCGGCC
TCCGCCCGGAGTACCCGGGCCAGATCTGCCCCCGGCCCACTGACGTGCAC
GCCCGCGTCATCGCCACGCAACAGGAGGCCTCTCTCACCGGGGAAACCTT
CGTCTACTACGACACGGCAAACGGGTTCGCCTGCAGGAACCAGCAGCAGA
GGGACGGGCGCTGCCTGGACTACGAGGTTCGCTTCTGTTGCCCCGACCCA
TACTGTCCGTCCGGAGACCCTTTCCTGTCCGGATGGTTCTGCGGAAGGGG
CGGCGAGAGGTGCCCTGCAGGTTACTACTGCGAGATCGAGCCCGCCGACC
GCTGGGCCGTCTGCTGCCCGCAGGAAGTGCCTCCCCCGGAGCCGAAAGAG
TGGGCGTGCTCCATAGACCTGGTGCTGGTGGTGGATCTCTCCTCCAGCCT
GACGGAACCCGGCTTCTTCAGCCTCAAACGCTTCATCATCGACTTCATCC
TCTGCTTCATAGAGCTGTGCGTGGACGCCCAGATCGGAATCATCACGTAC
GACTGCGTGCCGACCGCGTACCTGCCGCTGTGCACCTACCCCCCGGACGA
CTCGACCCTCCTGGACCGAGTGAACTGCCTGATGTACACGGGGCGCGGCG
GGAGTCGGACCGGGCATGCAATCAGCTTCATGGCCGAAACGTCGGACTTC
CGTGACGGGTTCCCCCATGCAGCGGTGGTGATGACGGACGGAAGCTCGGA
TGATGACTCCGCCGGCCAAGCAGACGCGGCCCGGGCCTCAGGAATCGACC
TGTACGCGGTGGGGACCGGACTGCCGTTCCTGCAGAACATGGCGGCCCTG
GAGGCCATCGCCGGTGGCCCAGTCGGCCTCCGCCCGGAGTACCCGGGCCA
GATCTGCCCCCGGCCCACTGACGTGCACGCCCGCGTCATCGCCACGCAAC
AGGAGGCCTCTCTCACCGGGGAAACCTTCGTCTACTACGACACGGCAAAC
GGGTTCGCCTGCAGGAACCAGCAGCAGAGGGACGGGCGCTGCCTGGACTA
CGAGGTTCGCTTCTGTTGCCCCGACCCATACTGTCCGTCCGGAGACCCTT
TCCTGTCCGGATGGTTCTGCGGAAGGGGCGGCGAGAGGTGCCCTGCAGGT
TACTACTGCGAGATCGAGCCCGCCGACCGCTGGGCCGTCTGCTGCCCGCA
GGAAGTGCCTCCCCCGGAGCCGAAAGAGTGGGCGTGCTCCATAGACCTGG
TGCTGGTGGTGGATCTCTCCTCCAGCCTGACGGAACCCGGCTTCTTCAGC
CTCAAACGCTTCATCATCGACTTCATCCTCTGCTTCATAGAGCTGTGCGT
GGACGCCCAGATCGGAATCATCACGTACGACTGCGTGCCGACCGCGTACC
TGCCGCTGTGCACCTACCCCCCGGACGACTCGACCCTCCTGGACCGAGTG
AACTGCCTGATGTACACGGGGCGCGGCGGGAGTCGGACCGGGCATGCAAT
CAGCTTCATGGCCGAAACGTCGGACTTCCGTGACGGGTTCCCCCATGCAG
CGGTGGTGATGACGGACGGAAGCTCGGATGATGACTCCGCCGGCCAAGCA
GACGCGGCCCGGGCCTCAGGAATCGACCTGTACGCGGTGGGGACCGGACT
GCCGTTCCTGCAGAACATGGCGGCCCTGGAGGCCATCGCCGGTGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:260636..264850 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96964_cuf2 |
| Biotype | protein_coding |
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