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transcript:BL96960_cuf6 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96960_cuf6
Unique Nametranscript:BL96960_cuf6
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96960_cuf6

>transcript:BL96960_cuf6-protein ID=transcript:BL96960_cuf6-protein|Name=transcript:BL96960_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=128bp
MNIRRICGRCTIGLAVLLTFYVVTEVGGCMKDEFPCPDGSCFRKRLFCDG
VADCSTGDDETYCFLIGFSGDCTPEELPCPGDGTCKDKNLLCDGKEDCAG
GGDEEYCFLFGLLSLLSLLRYPLAPLGG
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1776690..1783500-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96960_cuf6 ID=transcript:BL96960_cuf6|Name=transcript:BL96960_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=6811bp|location=Sequence derived from alignment at Sc0000044:1776690..1783500- (Branchiostoma lanceolatum)
CCCCGTTGTGAGCGTGGGTTTACATGCACGGCGTACTCGCGATTGTCCGG AGTTTACTGATAGTCTTATTTCAGTGTAGTTTAGTGTAGGCCGATGTAAG CCATAGATAAAGAAGTGATCACGCTTTGAAGACTGAAGATCTTTATGGAG ACTGATTACAGGTAAAGTTATCTGTTTATTCTTGTATTCTAGGAACTCTC GGTAAGAACTTGGCTTGCAAGGTAAACGTTTCTGTATGTACACATAACCG GTAACACACGTATCCGACGGAGTTTTGAAAAGTTTGGTCCGCTCAACACC GGAAGGACCCCTGGTCTCGTCGTGTGTTGGGTTCTTTACCAAGATCTAGG TGTAGCTATCGTTTAACGGATGACCACCACTACACATCGCATCATAAAGG ACGTCCTTCTGGATGGAATGTTAGCTACGCACTTGTCTTTACCAGACTTA AGTGGAGAACTAAGTACAGCTTTCTAATATGCTGGATGACCTTGGACATT TAGATCTTGATTCGACAACATTTATCTCAAGGTCACCATGATTTCTATTC TTATTTTACTGAAAATCCTGAAAATGTTCTTAAAACAAGAAAAGGCTATG GGTTATATAGCATTGATGTACGTAAAGGATGTATAAAGTTGATAACATGT TAGTTTTATAGGCATAGAATATCCCTGATCCTACGTGAGCAGAACAGGCC TAGGTGCCCATCTGCCAATTTGATTAGGAAATACCTCCCTGACAATTTAT CACGCAGGTCTTTGTCCAGCTTAACCATAATCTATATACCTTCTTTGCGT CGCATGAGAAGATATAAGCTTGATGGTAATAAGTATAAAACCATACACCC GTCACGTTGTTGTCTGCAACATTATAAACCAATCAAACACAAGATAATAA TGTCTTTACTTGTATGTATCAACAGCTCCAACAAAATATTTTCCCCAAGC TTGGTGATTGATTAGATACCTGAATGAATTATACATGTGCTGCCTCACAG ATACGCAGAAGCCTTGTGCCCAAGTTGCCCCAAAACAAGGAGAATGCTGA TTGGATGCTTACAGTCAGGTGACTAGCAAACTAACTAAGTCCATTCGTAT GAGGTGCAACGATTGGTTAGACCAAACTGTCGAAGGTTGAAGATTGCGTG CTTCGACAACGCCCATTTATTTTCCCCGGAGCACCGACGTGGCATCGCCG AGTTCTGGGCTTGTTGAAGCTAAGTGAGTTGGTTTTTTTTTCTCTCCATT AGTTCAGTTTATTTTCAGCAGNAATTTGATGATATGTTGGAATGGTGGAC AAAATGACAGGCAACTCAAGTGGGAGTGGGAAGTGTGCATATACTGTACT ACTGTAGGAAACTGATGTAGGTAGAGATCTGTTATGATTTCAATGTTGTT ATATTAATTTAAACCAAGAGTATTCATGCACTTTATAATACTTAACTTTT TTTTATTTCCCATACTGTAGGTTTACACCTGTAGCAGTTGCGGTACAGAG CCAAAGACCATCATATGTGATGGTAAGTGTTTGGTAAACAAATTTTAGAA GCAATCAAATGAACTATGCTAGTTAGAGTGGCAAACTTTTACAATTTCAC AGAATCCAGGGGGGCGCGGATTAATACTTTGTGCTGCTACCAGTGAGTGG ATGTGACCTCTGACATCATGAATATATGTAATTAGGTGACCCCCGTTGTG AGCGTGGGTTTACATGCACGGCGTACNAACTGTCGAAGGTTGAAGATTGC GTGCTTCGACAACGCCCATTTATTTTCCCCGGAGCACCGACGTGGCATCG CCGAGTTCTGGGCTTGTTGAAGCTAAGTGAGTTGGTTTTTTTTTCTCTCC ATTAGTTCAGTTTATTTTCAGCAGTACATTTTGATTGTAGACAGATTCTT AAACAGTGCTCAGTGATAGTGTTTCCTTTCTGATCAGTAATTGAGAACTG ATCCTGTCCCTGTTCTCCCTTGCATTTTTTTAATGATCGGCACTGTGTCT TTCGCCCTCAGAAAACGTTCTTGTTTTTTGGTAACAATATAATCACTTAT TTTGCCGATTTGTACGTGCCCAATGTCTGCAGTGTAGAAATAAACCCATT CAAAAACAGTTAAAGACTGAGGCTTTTGTCCAGTCAATATTTCTCTAATG ATCTACCACTACCAGCCATGTGTTTGATATCATTTGGAATCTTATCTATT TATTTTTTTACACTTTATACTTATTTTGCATTTGGAAAACGAGCACCATG GGCCTAATTTTACGAAAACAAAATGCATGCGATTGCTTGTAAACGCCAAT GTGCGCGCCGTACCAGGTACCTTAATTGGTACCTAATCGTAAAGATTTTA ACTATCGAGCATGCGCAATGCGATTGCGGAAAGCGCGCTTCAGGTATCAG AAGGTTCGTGTCTTTTACGGCTGTATTCATTAATTAATGATGGCGTTGCT GAAATTCCGTTCCTGAGTCCTTATTGCAAACAAATTTCTAAAAGTTTACG GAAAGAAGGGACAATAACTACTTTTGATGCGTTTAAGTTCGCGTACTTTT TATTTATTTTGTTACACTTTGTACTTATCTTGCATTTTGAAAACGAGTAC ATTGGGCTTAATTTTGCGAAAACAAAAACATGTGATTGCCTGTAAAAGCA AATATACGCGCCATGCCAGGTACCTTAGTTGGTACCTAATCTACAACTAT TGCATGATAGTGGGAATGAAACGGTGAAACGGATGTAGGTTCGCGAAGAT GCTTACTTAGGCAGGAAAGAATGGACAGAGTGCTTGGAAGCCGCGGCGTA ATAGAGAGACTAGCGGCTGGACAGAAACAACGACAGACCGGTGTCATGTT TCATAACTTGCGCAATTCCTATACTGAAGATGCATTTATCAAATGCTGTT ATGACTTGTACAGACCTCGACACGCTCTGTCCAATGAGGTTGCTCGGTTC AAAAGGTTAAAGACCTTGTCCTCCCCACAATCCGTGACATGCCTTGCTGA AGGCTTAGCTGATGCTTGCATGAAGCGTCCCCTGGCGAGACTTAGGCTGT CTATCTGCAGCTTGTACGACCAGGAAGGGTGGATATCTTAATCATCATCA TCATCACTATAAAGTGGATTATAGCGCGTCGAGTGGCAAAAATGACTGTT CCTACACTATGGGCCACAGATGGCCTTTTCCTTTATGCGGTGTTTCGACA TGTTAGTAACATTGCTAACACTTAATACATGTTTATGCTAGTTTCCAATG TATTGTATAATAGATTCATCATTCATTTCAACACGTCAAACAGTGACATC TAAGAATATACAGAAGCAGACAGTTGGGCAGATTAGCACCTGCTTTTATG GGGCCAATAGCTTAAATCTACTATTAATAAAATGTTGCTCTGAAGAAGGT GTCTGACAGACACTGAACCGTCAGCATGAGGATTTACTGGTTGTGAAAAA AAGAAAATTCCAATATTCTATGTTCCACCAACCTTAAGAAATTATTTTTG GAAATGTTGCAATTGTTTGTACATATATATAACATTAAACAATCGCAGCG ATGTTCTACAAAGGACTTTTGAAAGTCGATTTGAAATGTTTCGAAAATAT GTGAATAAAGTCAAACATATTTAGACATTCATTGTGATTTTATTTTCTAA TTGGAAGTATTATATCTTAACAAAACAGCACACATTTCTAGACTTATAGA AACGTAAGCTCACATTGAATATCTCGAACTATCGGAAACATTTTTGCGAA GGCACTAAATCACATACCAATCACATACATGAAACCTTTATTATCGCTTT TCTTTTCAGCTGCTAAGTTGCCACAACATGAACATCAGACGCATTTGTGG GCGCTGCACCATCGGCCTGGCAGTCCTCCTCACGTTCTATGTGGTGACAG GTACTTTTCTTTCTTAAGAAATTATTCCAAATTATAAGTAAACTCAAACT GCAAATAAAGATTAATTAAATGGTGATGGAGAAACAGTTGCCGCTTTTTT AATCTTAAATCCCTGTATCTCAATGCCACCTTTTTTTGGGCTGTTACTGG TTGCATTAACTCTAAACCCGTGTAGAATGTATTGTTAATTTCGAGGAAGG GGTAGTGTTTTTGTTGAGTCTGTGGCTTTGTGTTTCCAACGTACTTCGGT CAGTATAACCGACGAAACTATAGATAGACTGAAATGGGATTGAAATTGGG TTTAAGGATCGCTTGGCAATTAAATTTGACTCTCCTAGCTAGCGACCTGT CTTGGTACTGCATGCAGTGGACCTTCTTTTTATCTTCTGTTCTGGACGCA CTGTGGTCTTGATTTTAGGGTTACTTAGATAAATGCAAGTTATGCAGATA AAAACAAAATTTGCATAATTGTGTTTATTTTTTAAAAATTTGTGTCTGTA TTTTTCAAAAATTTAAAAATTTGCATAAATGTGTCTGGGTTTTTTGTGTG TTTTCCTTCGAGCTTCGTTTCACAAAAACTATTGTGATGATATTAAGTTA TACATTTAAATTTGCAAGAATAAGGTTAAAGCCATGTCCGGGTTACATGC GACTTTCCTCTGAAGCGCTGAGAACTTTTCTGCTTTTACACCTTTCCGTT TTGTTTTTAATTCATAGTTGGTATATGCCTTATTCAGGAACAGTAGTGAA GGCCATAAATGCAGCAGCCTCCTTTTCTTTATTTCTGTTGTTTTTGTTGC TGTTGAAAATTTTCAAAAATGATAACTCAAGATAAGGCCAATGGATTTTT GTCATGTTGACGGTTTTGACAGAGATGGTACAACGACCATTCGTATTCTC TTCTTGGTTTTGCCTTGGTTTTGGGTTGTGCTTCATACCTGTTTATATAT TAAACCGATGCCCGTTGTATTAATATGCACGAGTGCGCATGGGTATCTAT ATATAGATAACTGCATAAGTGAACAACAATGATTAATGATGATATATTTC GATTAACAGGGACGTAAATTAATGTCAGTCTAATAAACTAGACTACCTGG CCTTAATTGACCGCTGTCCATTTACTATTTCATAATTATTTTCTGGATAA GTCGGTCAATATAATTTTTTTTACCTAAAATTCCTAAAGCAACCTTGCAA CAGAGAGTCTCCAAATCCTCTTACATAAAACCTTCAATTTCAGAAGTTGG TGCATCAAGATATAACCTTTTTTTTTTTTTTATTAAACAACAGAAAAATA TACAGGACATAGAGATGATGCACTCTAGCTATCGCTAATATTAAACATCA TCTCTGGAAATAAACATTACAACTTACATAGATACAATAACAATAAGAAA CAGCAATTGGGCCGTCCAATACAAACTAACTAACAAACAAACAATCAATA TAATAACACGCCTGTACTACATTTCAAAACGTTTGCTGGTAGCAATAAAG TCCTGTGTCAAGCCCAAAATTTGGGGCCATGACAAAAATGTGAGTGGAAG TAGGGACGTACTATAACCTTGTTGACGAAGGTGATAAACATTATCCATGA TAGTCTATTTTCAATCATCCTTGGAGTAACTGAAACAAAAATCATTGCCA GTCTGATAGGTAGCACTGGATTTCAAGGCCCTAATTTCCGACTGTCAAAA GATTTCTTGGCAGGTTGGTTGATATAGATTTATCACCTAAAATTTCTAAC GCAAACTTGCAACAGAGAGTCTCCAAATTCATTCAAATACAAACAATCCA TTTCAGAAGTTGGCGGATGTATGAAGGACGAATTTCCTTGTCCCGACGGA AGCTGTTTCAGAAAAAGGTTGTTCTGTGATGGAGTTGCAGATTGTTCCAC CGGTGACGACGAAACATATTGCTTCCTGATCGGCTTCTGTGAGTAATAAT AACTCCTGGTGATAGTTAGAGGGTTAACTTTGCTAAAGTACCGCCAAAAA AGGCTCACGAGATTCGTCAAGTTAAAGTGATTATTATTCACCCGTTACAC GCGACCTTACCATGATACTAAATGCAGCATTGTTGTTAGCTATGATGTTA AAAGAAAGAAATTCATTTCGTGACTATTTTAAATGTTGTCTCAAATGGAC GAAACGTTGTGCGTATATGGGTTCTTATAACTATGAAAGGAAATAATTTT TTTTTGTGTTCCTATGTGACAATTAATCAGGTTGCTCTGCGAACATGTAT TTTTCCTAATTGTTCGGCAGAAAATGTTCAGGCTTCTATATGGTTAAAAC ATATGGCAACCACAGAAAGCAGAATACATTCATTTGTATATCTGTCTCAT TTCAAAAACCAAGTTCTTGCGTTTTGCAATCTTTTACCTCTTGATCTTTG TTCACGCCAGCGGGAGACTGCACGCCTGAGGAGCTCCCGTGTCCTGGTGA CGGCACGTGCAAAGATAAGAATCTGTTGTGTGACGGAAAGGAAGACTGTG CGGGTGGGGGGGACGAAGAGTACTGTTTCCTCTTTGGTTTGTTGAGTTTA TTGAGTTTATTGAGATACCCTTTAGCCCCTCTAGGGGGCTAATCTTCCAG GGCTCAAAAACACTACATGTATATCACAAAATACATACATACACACAGAA TTACACACATAATCACATATTTACATACAGGTAAAATCAGGTAGAATTGA AGATAAGGATTGGTTGAGGTCAGAGGTCAGAAGATAATTATGACTGAAAC CATCAGTCGACATATCTGGCAATAAAAACATATCTGCAAATTGCTACAAT TGCTACCTATTTACAAATCAAACTATCAATCCATCATCAAGTTAAAACCA TTACGTCGCATACAATTGATCAAGTAATTTCTTGATTTTGGTTTGTTCAT TTTTTTAATTG

Coding sequence (CDS) from alignment at Sc0000044:1776690..1783500-

>transcript:BL96960_cuf6 ID=transcript:BL96960_cuf6|Name=transcript:BL96960_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1161bp|location=Sequence derived from alignment at Sc0000044:1776690..1783500- (Branchiostoma lanceolatum)
ATGAACATCAGACGCATTTGTGGGCGCTGCACCATCGGCCTGGCAGTCCT
CCTCACGTTCTATGTGGTGACAGAAGTTGGCGGATGTATGAAGGACGAAT
TTCCTTGTCCCGACGGAAGCTGTTTCAGAAAAAGGTTGTTCTGTGATGGA
GTTGCAGATTGTTCCACCGGTGACGACGAAACATATTGCTTCCTGATCGG
CTTCTCGGGAGACTGCACGCCTGAGGAGCTCCCGTGTCCTGGTGACGGCA
CGTGCAAAGATAAGAATCTGTTGTGTGACGGAAAGGAAGACTGTGCGGGT
GGGGGGGACGAAGAGTACTGTTTCCTCTTTGGTTTGTTGAGTTTATTGAG
TTTATTGAGATACCCTTTAGCCCCTCTAGGGGGCTAAATGAACATCAGAC
GCATTTGTGGGCGCTGCACCATCGGCCTGGCAGTCCTCCTCACGTTCTAT
GTGGTGACAGAAGTTGGCGGATGTATGAAGGACGAATTTCCTTGTCCCGA
CGGAAGCTGTTTCAGAAAAAGGTTGTTCTGTGATGGAGTTGCAGATTGTT
CCACCGGTGACGACGAAACATATTGCTTCCTGATCGGCTTCTCGGGAGAC
TGCACGCCTGAGGAGCTCCCGTGTCCTGGTGACGGCACGTGCAAAGATAA
GAATCTGTTGTGTGACGGAAAGGAAGACTGTGCGGGTGGGGGGGACGAAG
AGTACTGTTTCCTCTTTGGTTTGTTGAGTTTATTGAGTTTATTGAGATAC
CCTTTAGCCCCTCTAGGGGGCTAAATGAACATCAGACGCATTTGTGGGCG
CTGCACCATCGGCCTGGCAGTCCTCCTCACGTTCTATGTGGTGACAGAAG
TTGGCGGATGTATGAAGGACGAATTTCCTTGTCCCGACGGAAGCTGTTTC
AGAAAAAGGTTGTTCTGTGATGGAGTTGCAGATTGTTCCACCGGTGACGA
CGAAACATATTGCTTCCTGATCGGCTTCTCGGGAGACTGCACGCCTGAGG
AGCTCCCGTGTCCTGGTGACGGCACGTGCAAAGATAAGAATCTGTTGTGT
GACGGAAAGGAAGACTGTGCGGGTGGGGGGGACGAAGAGTACTGTTTCCT
CTTTGGTTTGTTGAGTTTATTGAGTTTATTGAGATACCCTTTAGCCCCTC
TAGGGGGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96960gene:BL96960Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96960_cuf6transcript:BL96960_cuf6-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96960_cuf6-E1BL96960_cuf6-E1-1564476830-212944Branchiostoma lanceolatumexon
BL96960_cuf6-E2BL96960_cuf6-E2-1564476830-212942Branchiostoma lanceolatumexon
BL96960_cuf6-E3BL96960_cuf6-E3-1564476830-212939Branchiostoma lanceolatumexon
BL96960_cuf6-E4BL96960_cuf6-E4-1564476830-212937Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1776690..1783500 -
Properties
Property NameValue
Transcript idBL96960_cuf6
Biotypeprotein_coding