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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96960_cuf6 >transcript:BL96960_cuf6-protein ID=transcript:BL96960_cuf6-protein|Name=transcript:BL96960_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=128bp
MNIRRICGRCTIGLAVLLTFYVVTEVGGCMKDEFPCPDGSCFRKRLFCDG
VADCSTGDDETYCFLIGFSGDCTPEELPCPGDGTCKDKNLLCDGKEDCAG
GGDEEYCFLFGLLSLLSLLRYPLAPLGG Run BLAST on NCBI mRNA from alignment at Sc0000044:1776690..1783500- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96960_cuf6 ID=transcript:BL96960_cuf6|Name=transcript:BL96960_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=6811bp|location=Sequence derived from alignment at Sc0000044:1776690..1783500- (Branchiostoma lanceolatum)
CCCCGTTGTGAGCGTGGGTTTACATGCACGGCGTACTCGCGATTGTCCGG
AGTTTACTGATAGTCTTATTTCAGTGTAGTTTAGTGTAGGCCGATGTAAG
CCATAGATAAAGAAGTGATCACGCTTTGAAGACTGAAGATCTTTATGGAG
ACTGATTACAGGTAAAGTTATCTGTTTATTCTTGTATTCTAGGAACTCTC
GGTAAGAACTTGGCTTGCAAGGTAAACGTTTCTGTATGTACACATAACCG
GTAACACACGTATCCGACGGAGTTTTGAAAAGTTTGGTCCGCTCAACACC
GGAAGGACCCCTGGTCTCGTCGTGTGTTGGGTTCTTTACCAAGATCTAGG
TGTAGCTATCGTTTAACGGATGACCACCACTACACATCGCATCATAAAGG
ACGTCCTTCTGGATGGAATGTTAGCTACGCACTTGTCTTTACCAGACTTA
AGTGGAGAACTAAGTACAGCTTTCTAATATGCTGGATGACCTTGGACATT
TAGATCTTGATTCGACAACATTTATCTCAAGGTCACCATGATTTCTATTC
TTATTTTACTGAAAATCCTGAAAATGTTCTTAAAACAAGAAAAGGCTATG
GGTTATATAGCATTGATGTACGTAAAGGATGTATAAAGTTGATAACATGT
TAGTTTTATAGGCATAGAATATCCCTGATCCTACGTGAGCAGAACAGGCC
TAGGTGCCCATCTGCCAATTTGATTAGGAAATACCTCCCTGACAATTTAT
CACGCAGGTCTTTGTCCAGCTTAACCATAATCTATATACCTTCTTTGCGT
CGCATGAGAAGATATAAGCTTGATGGTAATAAGTATAAAACCATACACCC
GTCACGTTGTTGTCTGCAACATTATAAACCAATCAAACACAAGATAATAA
TGTCTTTACTTGTATGTATCAACAGCTCCAACAAAATATTTTCCCCAAGC
TTGGTGATTGATTAGATACCTGAATGAATTATACATGTGCTGCCTCACAG
ATACGCAGAAGCCTTGTGCCCAAGTTGCCCCAAAACAAGGAGAATGCTGA
TTGGATGCTTACAGTCAGGTGACTAGCAAACTAACTAAGTCCATTCGTAT
GAGGTGCAACGATTGGTTAGACCAAACTGTCGAAGGTTGAAGATTGCGTG
CTTCGACAACGCCCATTTATTTTCCCCGGAGCACCGACGTGGCATCGCCG
AGTTCTGGGCTTGTTGAAGCTAAGTGAGTTGGTTTTTTTTTCTCTCCATT
AGTTCAGTTTATTTTCAGCAGNAATTTGATGATATGTTGGAATGGTGGAC
AAAATGACAGGCAACTCAAGTGGGAGTGGGAAGTGTGCATATACTGTACT
ACTGTAGGAAACTGATGTAGGTAGAGATCTGTTATGATTTCAATGTTGTT
ATATTAATTTAAACCAAGAGTATTCATGCACTTTATAATACTTAACTTTT
TTTTATTTCCCATACTGTAGGTTTACACCTGTAGCAGTTGCGGTACAGAG
CCAAAGACCATCATATGTGATGGTAAGTGTTTGGTAAACAAATTTTAGAA
GCAATCAAATGAACTATGCTAGTTAGAGTGGCAAACTTTTACAATTTCAC
AGAATCCAGGGGGGCGCGGATTAATACTTTGTGCTGCTACCAGTGAGTGG
ATGTGACCTCTGACATCATGAATATATGTAATTAGGTGACCCCCGTTGTG
AGCGTGGGTTTACATGCACGGCGTACNAACTGTCGAAGGTTGAAGATTGC
GTGCTTCGACAACGCCCATTTATTTTCCCCGGAGCACCGACGTGGCATCG
CCGAGTTCTGGGCTTGTTGAAGCTAAGTGAGTTGGTTTTTTTTTCTCTCC
ATTAGTTCAGTTTATTTTCAGCAGTACATTTTGATTGTAGACAGATTCTT
AAACAGTGCTCAGTGATAGTGTTTCCTTTCTGATCAGTAATTGAGAACTG
ATCCTGTCCCTGTTCTCCCTTGCATTTTTTTAATGATCGGCACTGTGTCT
TTCGCCCTCAGAAAACGTTCTTGTTTTTTGGTAACAATATAATCACTTAT
TTTGCCGATTTGTACGTGCCCAATGTCTGCAGTGTAGAAATAAACCCATT
CAAAAACAGTTAAAGACTGAGGCTTTTGTCCAGTCAATATTTCTCTAATG
ATCTACCACTACCAGCCATGTGTTTGATATCATTTGGAATCTTATCTATT
TATTTTTTTACACTTTATACTTATTTTGCATTTGGAAAACGAGCACCATG
GGCCTAATTTTACGAAAACAAAATGCATGCGATTGCTTGTAAACGCCAAT
GTGCGCGCCGTACCAGGTACCTTAATTGGTACCTAATCGTAAAGATTTTA
ACTATCGAGCATGCGCAATGCGATTGCGGAAAGCGCGCTTCAGGTATCAG
AAGGTTCGTGTCTTTTACGGCTGTATTCATTAATTAATGATGGCGTTGCT
GAAATTCCGTTCCTGAGTCCTTATTGCAAACAAATTTCTAAAAGTTTACG
GAAAGAAGGGACAATAACTACTTTTGATGCGTTTAAGTTCGCGTACTTTT
TATTTATTTTGTTACACTTTGTACTTATCTTGCATTTTGAAAACGAGTAC
ATTGGGCTTAATTTTGCGAAAACAAAAACATGTGATTGCCTGTAAAAGCA
AATATACGCGCCATGCCAGGTACCTTAGTTGGTACCTAATCTACAACTAT
TGCATGATAGTGGGAATGAAACGGTGAAACGGATGTAGGTTCGCGAAGAT
GCTTACTTAGGCAGGAAAGAATGGACAGAGTGCTTGGAAGCCGCGGCGTA
ATAGAGAGACTAGCGGCTGGACAGAAACAACGACAGACCGGTGTCATGTT
TCATAACTTGCGCAATTCCTATACTGAAGATGCATTTATCAAATGCTGTT
ATGACTTGTACAGACCTCGACACGCTCTGTCCAATGAGGTTGCTCGGTTC
AAAAGGTTAAAGACCTTGTCCTCCCCACAATCCGTGACATGCCTTGCTGA
AGGCTTAGCTGATGCTTGCATGAAGCGTCCCCTGGCGAGACTTAGGCTGT
CTATCTGCAGCTTGTACGACCAGGAAGGGTGGATATCTTAATCATCATCA
TCATCACTATAAAGTGGATTATAGCGCGTCGAGTGGCAAAAATGACTGTT
CCTACACTATGGGCCACAGATGGCCTTTTCCTTTATGCGGTGTTTCGACA
TGTTAGTAACATTGCTAACACTTAATACATGTTTATGCTAGTTTCCAATG
TATTGTATAATAGATTCATCATTCATTTCAACACGTCAAACAGTGACATC
TAAGAATATACAGAAGCAGACAGTTGGGCAGATTAGCACCTGCTTTTATG
GGGCCAATAGCTTAAATCTACTATTAATAAAATGTTGCTCTGAAGAAGGT
GTCTGACAGACACTGAACCGTCAGCATGAGGATTTACTGGTTGTGAAAAA
AAGAAAATTCCAATATTCTATGTTCCACCAACCTTAAGAAATTATTTTTG
GAAATGTTGCAATTGTTTGTACATATATATAACATTAAACAATCGCAGCG
ATGTTCTACAAAGGACTTTTGAAAGTCGATTTGAAATGTTTCGAAAATAT
GTGAATAAAGTCAAACATATTTAGACATTCATTGTGATTTTATTTTCTAA
TTGGAAGTATTATATCTTAACAAAACAGCACACATTTCTAGACTTATAGA
AACGTAAGCTCACATTGAATATCTCGAACTATCGGAAACATTTTTGCGAA
GGCACTAAATCACATACCAATCACATACATGAAACCTTTATTATCGCTTT
TCTTTTCAGCTGCTAAGTTGCCACAACATGAACATCAGACGCATTTGTGG
GCGCTGCACCATCGGCCTGGCAGTCCTCCTCACGTTCTATGTGGTGACAG
GTACTTTTCTTTCTTAAGAAATTATTCCAAATTATAAGTAAACTCAAACT
GCAAATAAAGATTAATTAAATGGTGATGGAGAAACAGTTGCCGCTTTTTT
AATCTTAAATCCCTGTATCTCAATGCCACCTTTTTTTGGGCTGTTACTGG
TTGCATTAACTCTAAACCCGTGTAGAATGTATTGTTAATTTCGAGGAAGG
GGTAGTGTTTTTGTTGAGTCTGTGGCTTTGTGTTTCCAACGTACTTCGGT
CAGTATAACCGACGAAACTATAGATAGACTGAAATGGGATTGAAATTGGG
TTTAAGGATCGCTTGGCAATTAAATTTGACTCTCCTAGCTAGCGACCTGT
CTTGGTACTGCATGCAGTGGACCTTCTTTTTATCTTCTGTTCTGGACGCA
CTGTGGTCTTGATTTTAGGGTTACTTAGATAAATGCAAGTTATGCAGATA
AAAACAAAATTTGCATAATTGTGTTTATTTTTTAAAAATTTGTGTCTGTA
TTTTTCAAAAATTTAAAAATTTGCATAAATGTGTCTGGGTTTTTTGTGTG
TTTTCCTTCGAGCTTCGTTTCACAAAAACTATTGTGATGATATTAAGTTA
TACATTTAAATTTGCAAGAATAAGGTTAAAGCCATGTCCGGGTTACATGC
GACTTTCCTCTGAAGCGCTGAGAACTTTTCTGCTTTTACACCTTTCCGTT
TTGTTTTTAATTCATAGTTGGTATATGCCTTATTCAGGAACAGTAGTGAA
GGCCATAAATGCAGCAGCCTCCTTTTCTTTATTTCTGTTGTTTTTGTTGC
TGTTGAAAATTTTCAAAAATGATAACTCAAGATAAGGCCAATGGATTTTT
GTCATGTTGACGGTTTTGACAGAGATGGTACAACGACCATTCGTATTCTC
TTCTTGGTTTTGCCTTGGTTTTGGGTTGTGCTTCATACCTGTTTATATAT
TAAACCGATGCCCGTTGTATTAATATGCACGAGTGCGCATGGGTATCTAT
ATATAGATAACTGCATAAGTGAACAACAATGATTAATGATGATATATTTC
GATTAACAGGGACGTAAATTAATGTCAGTCTAATAAACTAGACTACCTGG
CCTTAATTGACCGCTGTCCATTTACTATTTCATAATTATTTTCTGGATAA
GTCGGTCAATATAATTTTTTTTACCTAAAATTCCTAAAGCAACCTTGCAA
CAGAGAGTCTCCAAATCCTCTTACATAAAACCTTCAATTTCAGAAGTTGG
TGCATCAAGATATAACCTTTTTTTTTTTTTTATTAAACAACAGAAAAATA
TACAGGACATAGAGATGATGCACTCTAGCTATCGCTAATATTAAACATCA
TCTCTGGAAATAAACATTACAACTTACATAGATACAATAACAATAAGAAA
CAGCAATTGGGCCGTCCAATACAAACTAACTAACAAACAAACAATCAATA
TAATAACACGCCTGTACTACATTTCAAAACGTTTGCTGGTAGCAATAAAG
TCCTGTGTCAAGCCCAAAATTTGGGGCCATGACAAAAATGTGAGTGGAAG
TAGGGACGTACTATAACCTTGTTGACGAAGGTGATAAACATTATCCATGA
TAGTCTATTTTCAATCATCCTTGGAGTAACTGAAACAAAAATCATTGCCA
GTCTGATAGGTAGCACTGGATTTCAAGGCCCTAATTTCCGACTGTCAAAA
GATTTCTTGGCAGGTTGGTTGATATAGATTTATCACCTAAAATTTCTAAC
GCAAACTTGCAACAGAGAGTCTCCAAATTCATTCAAATACAAACAATCCA
TTTCAGAAGTTGGCGGATGTATGAAGGACGAATTTCCTTGTCCCGACGGA
AGCTGTTTCAGAAAAAGGTTGTTCTGTGATGGAGTTGCAGATTGTTCCAC
CGGTGACGACGAAACATATTGCTTCCTGATCGGCTTCTGTGAGTAATAAT
AACTCCTGGTGATAGTTAGAGGGTTAACTTTGCTAAAGTACCGCCAAAAA
AGGCTCACGAGATTCGTCAAGTTAAAGTGATTATTATTCACCCGTTACAC
GCGACCTTACCATGATACTAAATGCAGCATTGTTGTTAGCTATGATGTTA
AAAGAAAGAAATTCATTTCGTGACTATTTTAAATGTTGTCTCAAATGGAC
GAAACGTTGTGCGTATATGGGTTCTTATAACTATGAAAGGAAATAATTTT
TTTTTGTGTTCCTATGTGACAATTAATCAGGTTGCTCTGCGAACATGTAT
TTTTCCTAATTGTTCGGCAGAAAATGTTCAGGCTTCTATATGGTTAAAAC
ATATGGCAACCACAGAAAGCAGAATACATTCATTTGTATATCTGTCTCAT
TTCAAAAACCAAGTTCTTGCGTTTTGCAATCTTTTACCTCTTGATCTTTG
TTCACGCCAGCGGGAGACTGCACGCCTGAGGAGCTCCCGTGTCCTGGTGA
CGGCACGTGCAAAGATAAGAATCTGTTGTGTGACGGAAAGGAAGACTGTG
CGGGTGGGGGGGACGAAGAGTACTGTTTCCTCTTTGGTTTGTTGAGTTTA
TTGAGTTTATTGAGATACCCTTTAGCCCCTCTAGGGGGCTAATCTTCCAG
GGCTCAAAAACACTACATGTATATCACAAAATACATACATACACACAGAA
TTACACACATAATCACATATTTACATACAGGTAAAATCAGGTAGAATTGA
AGATAAGGATTGGTTGAGGTCAGAGGTCAGAAGATAATTATGACTGAAAC
CATCAGTCGACATATCTGGCAATAAAAACATATCTGCAAATTGCTACAAT
TGCTACCTATTTACAAATCAAACTATCAATCCATCATCAAGTTAAAACCA
TTACGTCGCATACAATTGATCAAGTAATTTCTTGATTTTGGTTTGTTCAT
TTTTTTAATTG Coding sequence (CDS) from alignment at Sc0000044:1776690..1783500- >transcript:BL96960_cuf6 ID=transcript:BL96960_cuf6|Name=transcript:BL96960_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1161bp|location=Sequence derived from alignment at Sc0000044:1776690..1783500- (Branchiostoma lanceolatum)
ATGAACATCAGACGCATTTGTGGGCGCTGCACCATCGGCCTGGCAGTCCT
CCTCACGTTCTATGTGGTGACAGAAGTTGGCGGATGTATGAAGGACGAAT
TTCCTTGTCCCGACGGAAGCTGTTTCAGAAAAAGGTTGTTCTGTGATGGA
GTTGCAGATTGTTCCACCGGTGACGACGAAACATATTGCTTCCTGATCGG
CTTCTCGGGAGACTGCACGCCTGAGGAGCTCCCGTGTCCTGGTGACGGCA
CGTGCAAAGATAAGAATCTGTTGTGTGACGGAAAGGAAGACTGTGCGGGT
GGGGGGGACGAAGAGTACTGTTTCCTCTTTGGTTTGTTGAGTTTATTGAG
TTTATTGAGATACCCTTTAGCCCCTCTAGGGGGCTAAATGAACATCAGAC
GCATTTGTGGGCGCTGCACCATCGGCCTGGCAGTCCTCCTCACGTTCTAT
GTGGTGACAGAAGTTGGCGGATGTATGAAGGACGAATTTCCTTGTCCCGA
CGGAAGCTGTTTCAGAAAAAGGTTGTTCTGTGATGGAGTTGCAGATTGTT
CCACCGGTGACGACGAAACATATTGCTTCCTGATCGGCTTCTCGGGAGAC
TGCACGCCTGAGGAGCTCCCGTGTCCTGGTGACGGCACGTGCAAAGATAA
GAATCTGTTGTGTGACGGAAAGGAAGACTGTGCGGGTGGGGGGGACGAAG
AGTACTGTTTCCTCTTTGGTTTGTTGAGTTTATTGAGTTTATTGAGATAC
CCTTTAGCCCCTCTAGGGGGCTAAATGAACATCAGACGCATTTGTGGGCG
CTGCACCATCGGCCTGGCAGTCCTCCTCACGTTCTATGTGGTGACAGAAG
TTGGCGGATGTATGAAGGACGAATTTCCTTGTCCCGACGGAAGCTGTTTC
AGAAAAAGGTTGTTCTGTGATGGAGTTGCAGATTGTTCCACCGGTGACGA
CGAAACATATTGCTTCCTGATCGGCTTCTCGGGAGACTGCACGCCTGAGG
AGCTCCCGTGTCCTGGTGACGGCACGTGCAAAGATAAGAATCTGTTGTGT
GACGGAAAGGAAGACTGTGCGGGTGGGGGGGACGAAGAGTACTGTTTCCT
CTTTGGTTTGTTGAGTTTATTGAGTTTATTGAGATACCCTTTAGCCCCTC
TAGGGGGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000044 | genome | Sc0000044:1776690..1783500 - |
Properties
| Property Name | Value |
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| Transcript id | BL96960_cuf6 |
| Biotype | protein_coding |
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