transcript:BL96958_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96958_cuf3
Unique Nametranscript:BL96958_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96958_cuf3

>transcript:BL96958_cuf3-protein ID=transcript:BL96958_cuf3-protein|Name=transcript:BL96958_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
MLGKLLLATAVVLAAFGGGASAQREDASITTCPDGKPLVVCAADPCAVVR
CEAGTQCVSNFCGGCNAECVPIKEPVECNSWTNWFDRDDPSVTGDWEVLS
NLQQENPGQICKKPSAIDVRVVGTGQDALATGENFAFCD
Run BLAST on NCBI

mRNA from alignment at Sc0000044:283565..287316-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96958_cuf3 ID=transcript:BL96958_cuf3|Name=transcript:BL96958_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3752bp|location=Sequence derived from alignment at Sc0000044:283565..287316- (Branchiostoma lanceolatum)
CCAGAATCCCGCCATATACCGGTTCGTACTGGACTCTCCGGCACATTTCA
TCGGGGTCTCTCGTCTCAGACGGACCACACTTCGGAGAGAAGACAGAGCG
GACCGAGGTTCGGAGAGAAGACAGAGCGGGCCGTGGTTCAAAGACTCTAC
TGTGAACTGTTTCCTACTGTTTTCAGAGTGCATCAAACGGTCAGTAATGT
TGTCAGATTGTTCTATGTATTATCTATATACATATAGTAACAACGTACTT
TTTGGTACGAATAATGAACGGAAGGAGACACTGAGGGCAGGGTTGGATGC
GAGTTCTGTTCAGGGCAAAGTTCTGGTTTTTACAAACTGTGCGGAGTTCT
GCCTACCGCCGTTGCCTGAGTGGCTCAAACGGTAAGTAATTTTCCCACTC
AGAAATAACCCATGCAGCAAAATGTACTACTGTTTTTTTTTTAATCGTCC
AGTTGGTTTGTAACAGAAGTGCAGTCGGTGCCCGTGTACTGTTTTAGTTT
TTTGCATTGACTTCGTTTTCGCGGATATCGGAGAAATGTTTCAATATCTG
ACAGCCATATCAAACAGTTGGTCAAGACGGGGGACTGTACATAGGATGCG
TCCCGGTCATTTACTTGTTGGGACGGAATAAGATCTGTCCATCCAAAAAA
TCTTAACTTCATGACTGAAAATTGATGAAGATATTTTTTGTAAGCTTAAA
AAAGCAGACTTTCGACGAAAAGTAACAACGTTTGCTACCAAACAATAAGT
GGGACATTATGATGTACACACAAAATCAGAGCTGGGCACAGATGTTGTTA
CTAGTATGCTTAGGTCCCGATCGGAAAAAAAGGAATCCCACCGGGTTTAA
TAGCTGTTTTTTTTTCACTTTCGGGCAACACCCCTACGTGGCTCCCTGGG
ACATTCTGTGGCTGCTGGGCTATTTTAGGGCACTGCGAGGTCCCTCTCCT
GTACCCGGCAGTCCAACGCGAGGTCCCTCTCCCGTACCCGGCAGTCCAAA
CTTGCGGGAAGGCAGATTAGAATTTGAATGAAAGACCTTTATTGTGCATT
CATGCCCCGAGAGGCTAGGTACAGGTCGTCTAACTTAACACATGGAACAT
ACAAGGACATAATACAAGACAGACACCAACGTAACTCTAGCGCTTAATGC
ACGTACTGTGTGATAGAACATATTCCCACTAATTCTTCCCCAGACTCCAC
CACGACAGACATGCTGGGGAAACTGCTACTGGCCACCGCCGTGGTACTCG
CTGCTTTTGGCGGCGGGGCCAGCGCTCAGAGAGAAGGTACGTCTGTTAGA
TTTTTTTAGTAATTTCGGCAAGAATAATGTTTGATTCAGCCATGGACATG
ACATCCGCCAAAATGGCTGGGTAATTTTTAATGTAAAGTTGCTTCCTTTG
TCTGTCAAGCGGGTCTGTGTGATGTGCTGTTGCATTGTGCAAAGAAACGC
CCGACGTGTAAAATGTTTCTCTCCCTATTTTCCCGGATCCCTCTAGATGC
CAGCATCACCACCTGCCCTGACGGAAAGCCCCTGGTGGTGTGTGCAGCGG
ACCCGTGCGCTGTCGTCAGGTGTGAGGCGGGGACTCAGTGTGTGTGAGTA
ACGAAGTCTTCTCTTATTCGCCATAATCTAATATCCATCCAACCCTTATG
GGTCTTATAGCACCATTGTTGGACGCTAGATAATGTTTAATTACGATGAG
AGTTTTTCGTGTTCATTTTACCGCTGGTTATTTGGCTTGACGCGCCAGTA
ACGTCCATTTTGGCACTTGTTCTTCAGTTTGACGCGTCATAAACTCTTAA
CTTTACGCTGGTTATTCAGCTTGACACGTCTTTAACGCCCATTTTGACGC
TGGTGATTCGATTTGGCGCGTCAGTAACGTCCATTTTATAACCGTCATCT
ATCCTTCCGCAGGTCCAACTTCTGTGGCGGGTGTAACGCCGAGTGCGTCC
CGATCAAAGAGCCAGGTACGTCCTGCAAATATGTCGCCGTATCTCCCTAT
ATTCATCTTTTGCGTCTTATTTTTCTTTTCTGAGTAAAACGTATTCCTCA
TACTCTTGAAGTGGTAACTGGAAAAATGTTGTACACCTGATTAAGTGGAT
CTTTTCATTAAGGTCGCCATCGAATCATTGCAAATACGTCTGGTGACTTT
AGAGCAATTGAAATATCATAGAAAATAAAAACTTGTTGTATACTTCCTAA
TGTTCCTGTCTTCTTTGTGCATTTGTCAGTATTATGTGCATTTGTATGTT
CAACTTACTGGATGATTGGGAAAGCTTGTATCCAACCAGATGTAGCACCA
GGGCTTGTTTTACGTGAATTTAGCGGGTTTTTTTCTGGGTTATTTTTTCT
AAAGGTGCGTTAATTTTGAAGTGCACACCTCTATAACCGTACAAACCACC
CCTAGTGCGCTCAAAACTGCTCGGAGTTTGACTTAAGGCAACTGTACCGT
CACACACCATGCCTGTCACGTTCTATGCTTTCCCAGGCACAGAACGTGAC
ACAGCCCGACCGTCACAGACTGTGCCCGGAAGTGCTGTCAATCGCTGTGA
CTGACGGGGCAGTGATGCCCGCGTTTCCATATAAGGCAGCGTGTTTTTGT
TTACCGCAGTCCCCCCACCCCCCGTCATCTTTGTTTTTTGGGGCGCTGAG
GTAAGGAGGAACAGCGTAATTCTCGCTCTGTAAAATAATTGAATAACTTA
GACCTAGAATTGAAGTGGCACAAAAAGACAGTGTCTATAACAGATGCTAA
AAAAAAAACATTTTGTAAGACTAAATATATTCTATCCAGGGAAACCAGAT
CTAGACTAGGATCGGGCCACTTGCCGATTACTTCGACGTCCCGAGGCAGT
CAGCTCGCCCGATCTAGATCAATGCTACGGGAAGTTGTAGCCCCGGGCAC
TGTCAAGGCACGGTTCGTGACAGTGCCGGAGTGTCGCAAACTGTGCTTTT
GCCCCAGGCACGGTTTGTGACACTCAGGCACTGTCACGATCCGTGCCTGG
ACACAGTTTGTGACAGTGCCCGAGTGTCACAAACCGTGCCTGGGGCAAAA
GCACGGTTTGTGACACTCCGGCACTGTCACAAACCGTGCCTCAGGACACA
GTCGTGAATGGCAGGGTTCGGGACGGATTTCTGTTGTAGAAATTCGTGAT
GAGACGTCCGTCTGTTTGTGCCACATCAACTCTAAGTCGAAATCATCCAA
GACAAGCGCGAAATGTATTTCAATGAGCGAGAATTACGCTGATTCTTTCT
CATCCCAGCGCCTCGAAAAAAACAAAGATGGCGGGCTGCAGGGAAAAAAC
GCGTTGGGCAGACTCCTCCTCCTCAAAACACTAAGCTCCGCCCAAAAGCA
CAGTATGGGATAAGACCCCCTGTGTGTCACGAACTGTGCTTGGTTGGGCA
CCATTCGTGACGGTGTCCGAGTGTCACAAACCGTGCTTTTGTCCCAGGCA
CGGTTTGTGACACGCGGGCACTGTCACAAACCGTGCCTAGGCACCAAACG
TGACAAAGCACCAAACGTGACGCAACAGCAACCTTCAGTGAAACTTGTTT
CAAAACCCCAGTTGAGTGCAACAGTTGGACGAACTGGTTTGATCGTGACG
ACCCGTCGGTGACCGGGGACTGGGAAGTACTGTCCAACCTCCAGCAGGAA
AACCCCGGGCAGATCTGCAAGAAGCCCTCGGCCATCGACGTGCGCGTCGT
CGGCACGGGGCAGGACGCGTTGGCCACGGGAGAGAACTTCGCGTTCTGCG
AC

Coding sequence (CDS) from alignment at Sc0000044:283565..287316-

>transcript:BL96958_cuf3 ID=transcript:BL96958_cuf3|Name=transcript:BL96958_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1668bp|location=Sequence derived from alignment at Sc0000044:283565..287316- (Branchiostoma lanceolatum)
ATGCTGGGGAAACTGCTACTGGCCACCGCCGTGGTACTCGCTGCTTTTGG
CGGCGGGGCCAGCGCTCAGAGAGAAGATGCCAGCATCACCACCTGCCCTG
ACGGAAAGCCCCTGGTGGTGTGTGCAGCGGACCCGTGCGCTGTCGTCAGG
TGTGAGGCGGGGACTCAGTGTGTGTCCAACTTCTGTGGCGGGTGTAACGC
CGAGTGCGTCCCGATCAAAGAGCCAGTTGAGTGCAACAGTTGGACGAACT
GGTTTGATCGTGACGACCCGTCGGTGACCGGGGACTGGGAAGTACTGTCC
AACCTCCAGCAGGAAAACCCCGGGCAGATCTGCAAGAAGCCCTCGGCCAT
CGACGTGCGCGTCGTCGGCACGGGGCAGGACGCGTTGGCCACGGGAGAGA
ACTTCGCGTTCTGCGACATGCTGGGGAAACTGCTACTGGCCACCGCCGTG
GTACTCGCTGCTTTTGGCGGCGGGGCCAGCGCTCAGAGAGAAGATGCCAG
CATCACCACCTGCCCTGACGGAAAGCCCCTGGTGGTGTGTGCAGCGGACC
CGTGCGCTGTCGTCAGGTGTGAGGCGGGGACTCAGTGTGTGTCCAACTTC
TGTGGCGGGTGTAACGCCGAGTGCGTCCCGATCAAAGAGCCAGTTGAGTG
CAACAGTTGGACGAACTGGTTTGATCGTGACGACCCGTCGGTGACCGGGG
ACTGGGAAGTACTGTCCAACCTCCAGCAGGAAAACCCCGGGCAGATCTGC
AAGAAGCCCTCGGCCATCGACGTGCGCGTCGTCGGCACGGGGCAGGACGC
GTTGGCCACGGGAGAGAACTTCGCGTTCTGCGACATGCTGGGGAAACTGC
TACTGGCCACCGCCGTGGTACTCGCTGCTTTTGGCGGCGGGGCCAGCGCT
CAGAGAGAAGATGCCAGCATCACCACCTGCCCTGACGGAAAGCCCCTGGT
GGTGTGTGCAGCGGACCCGTGCGCTGTCGTCAGGTGTGAGGCGGGGACTC
AGTGTGTGTCCAACTTCTGTGGCGGGTGTAACGCCGAGTGCGTCCCGATC
AAAGAGCCAGTTGAGTGCAACAGTTGGACGAACTGGTTTGATCGTGACGA
CCCGTCGGTGACCGGGGACTGGGAAGTACTGTCCAACCTCCAGCAGGAAA
ACCCCGGGCAGATCTGCAAGAAGCCCTCGGCCATCGACGTGCGCGTCGTC
GGCACGGGGCAGGACGCGTTGGCCACGGGAGAGAACTTCGCGTTCTGCGA
CATGCTGGGGAAACTGCTACTGGCCACCGCCGTGGTACTCGCTGCTTTTG
GCGGCGGGGCCAGCGCTCAGAGAGAAGATGCCAGCATCACCACCTGCCCT
GACGGAAAGCCCCTGGTGGTGTGTGCAGCGGACCCGTGCGCTGTCGTCAG
GTGTGAGGCGGGGACTCAGTGTGTGTCCAACTTCTGTGGCGGGTGTAACG
CCGAGTGCGTCCCGATCAAAGAGCCAGTTGAGTGCAACAGTTGGACGAAC
TGGTTTGATCGTGACGACCCGTCGGTGACCGGGGACTGGGAAGTACTGTC
CAACCTCCAGCAGGAAAACCCCGGGCAGATCTGCAAGAAGCCCTCGGCCA
TCGACGTGCGCGTCGTCGGCACGGGGCAGGACGCGTTGGCCACGGGAGAG
AACTTCGCGTTCTGCGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96958gene:BL96958Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96958_cuf3transcript:BL96958_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96958_cuf3-E1BL96958_cuf3-E1-1564476830-211352Branchiostoma lanceolatumexon
BL96958_cuf3-E2BL96958_cuf3-E2-1564476830-211350Branchiostoma lanceolatumexon
BL96958_cuf3-E3BL96958_cuf3-E3-1564476830-211347Branchiostoma lanceolatumexon
BL96958_cuf3-E4BL96958_cuf3-E4-1564476830-211345Branchiostoma lanceolatumexon
BL96958_cuf3-E5BL96958_cuf3-E5-1564476830-211343Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:283565..287316 -
Properties
Property NameValue
Transcript idBL96958_cuf3
Biotypeprotein_coding