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transcript:BL96950_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96950_cuf0
Unique Nametranscript:BL96950_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96950_cuf0

>transcript:BL96950_cuf0-protein ID=transcript:BL96950_cuf0-protein|Name=transcript:BL96950_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=130bp
VIALLVAPPNNGTRAQEGFTTLLTQSCVSAGLSIGGAIAGFATKHNIGVG
PRFSYATNSLLIAVGLMTGISGTINSVVHIGQASGLAGVILGAIVSFLWV
VAFAWYMSRFCRCNKGQSPQQGETNAAVAV
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1458065..1465927-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96950_cuf0 ID=transcript:BL96950_cuf0|Name=transcript:BL96950_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=7863bp|location=Sequence derived from alignment at Sc0000044:1458065..1465927- (Branchiostoma lanceolatum)
GTGATCGCGCTTTTGGTTGCTCCGCCAAACAACGGGACTAGTACGTCAAA CGCGTTTCATGTGTATCTGTTTAACATAATATTTAGAAAGTTAAAATGTA TGGCATCTAATCATAGACAGTAGATAGAATATTCATATACAAGGTCTTAT GAATTTCAACTAAATGCGTGAAAAGTCAAGACCCAACCCCCCTGTTCAGT CCAGACTTGTTTAACCCAAGCCCCCTGTCCAATTCAATTTGTACCCCCCC CCCCCCGTCTAGTCCACATTTTTCTGACCATCCCCCCTCCAATCCTTTGT CTTTCTTATGATTCTATTATATACTTTTAAACTTAAAAGTTTGTTTCTCT CAGGAGCGCAGGAAGGTTTCACCACCCTTCTGACCCAGTCATGTGTCTCG GCCGGTTTGTCCATCGGGGGAGCTATTGCAGGATTCGCGACCAAACATAA CATCGGTGAGTTGGCGGCATTAGTAACTTGTCCATAAACAGATGCCATTA CCGAAAACTGTATATTTTCCAAGTACTTTAAACACAATCAGGAGGTATCT AGTATCTTCCGACGCTTGGGTGACCATCTGTTACCTTCCTCAGGGCAATA CTGACTCGTTGTACTTGCCCACGGTCTTGATGATGGCCATTTTGGCATGT TGTTGGGAAAGTCGTGTAAAGTGCACAAGATCGGTGACACGGTAGGATTC GAACCCGGGACCACTTGATTCTGAGTCGAACACGCTGCTGTTGCGCCTCA CGGCCGCAAGATGTCGCTGCTGCAGTGCGAAGAATGCGGTCCCAAGCGCG ATGTACGTATCATGCATCCCACTCCCCTCATTAGCGACATGAGAAAGGTG GACGCTTTTGTTTGTTTGAACCTTTGTTTATTCATGATAAGCTCAAATCG GCACGCAGGCTGCTTTTCATTGAGGTCATGAGGGAAGAGGTAAGGGTCAG ATACAATATAACAGAGATACACAGTCATTTGAGTCCTAATAACTCTATCA ACATATATCATTACATATTCATGGTACAACTTACAATATACAATTTCTAC AACATACAACATAAAGTAGGGCGAAAGCTGGTTCATGGTCCGTGTCCGTT CGATTAGTTCATTTCCGTTACTTCAAGAGTCTCTTAGGTTAAAGGAAGTC AGATTCTGTTTTGTGGGTTTTGTAATTCTTTCTTTTTTTCTGCCTCCAGG CGTTGGACCGAGGTTCTCTTACGCCACCAATTCCCTATTGATCGCCGTGG GACTGATGACTGGCATCTCCGGAACTATCAATTCGGTTGTCCACATCGGA CAAGGTAACTGGATGAACCACTATTTACTTAAAGGCCCTCTATGTAGTTT TTTGGGGGGCCAAAATTATGAATATTCTTATGAATAAATCTAATCGTGAA GGACATGTTTAACCACTTTTCAGCAGATTTTCATTTTTGTTTCATATTTC TGGACGCATATACGACATATTTAAACACAATTCGCATGCGCCGCTATTCG AATACCGCATTCCGACGTTGAAATTGATGTTGTTACAATTTTTGTCCTGG GAGACCAACTTTTTCTACTTCTGGCGCATCACGCTTTTAGATATGTATTT CTGGTGGATATGACATGAATGAAATTCAGCACGAAAAAAATACACTCCGC ATGCCTGACCCCCACAGTCCTTCGGCCAGACCTTGATCCGACCCACGGTC AGGCTGGTACCCTATATTTATGTCATACCTGGGCCTGATACGGGTGTTCC GGACCGTGTGATAACTATCCGGATCACATAGGGTTCGGGAGTGTTATCAC ACAGGCTTCCATAAAATATTTCGAATGCATTTGGAGCGCGCCGGTTGCGC CGCCGTCGGAAATTCGAATACCGGATTCGGAGGTTAGAATCAATGTTGTT ACAGTTTTGTGTTCGAGAACACAAAACTCCCTCAACTTCTGGCGCTTTCC GCATTGAAATGTGTGTTTTCTCGGGTGGGTATGACCAAGGTATGACATAT GTATATGGCCTCCGTCGGTCAGTATTGACCATGGTAAAATCCTAATTCAC AACAGCCCTACAGCATCGACTATGGCTAGACAGCCTTACACGAGAATGGC AGTCTCTGCCACAAAAATCACATCTGTAAGCTGACTCAGTTCTGTTGCAA AGCTCTTTTCTGCGGATCCGCTTTTCTTCTGCGCTGTGCATCAGTCTAGC TTCTCCTGATTTCAGCTGTCTGGACAGTGTGCATCTCCACCTGGAACGGT CACTTGCACCATGTGTATTCTAATCATGTCATTTTTGTTTTCAGCCAGCG GCCTAGCCGGAGTCATCCTCGGCGCCATCGTCTCTTTCCTGTGGGTGGTG GCCTTCGCTTGGTACATGTCCCGCTTCTGTAGGTGTAACAAGGGGCAGTC ACCGCAACAAGGGGAAACGGTAACATATTTCTGCTTTCTTTACACTGCAC GAAATGGCCTCGGATCCTGACGTATCTGGACAGGTTAACTCGGAGATCCG GAACCTCAGATCCGTAAGAATCCAGACGGATACGGGGGCCGTATTGTACT GAAACAACTCAAATTTACCTGAATTAAATTGCATGTGCAAGTGGTATACC ACATCAGTGTACCACTTGCATATTTAGTTTAATGTAGGTAAATTTGAGTT GTTTTAGTACAATACGGCCCCCGAAACCGTCTGGATTCTTACGGATCTGA GGATCCGGATCTCCGAGTTCTCCTGTCCGGATACGTCAGGATCCGAGGCC ATTTCGTGCAGTGTTAGCCATACTGACTCTCTCAGTGCTTAAGCCCTGCT TTTTATAGAGGCCCTGGAAAATAAAACAATACTATACGTTTTTGAAGGTT AGACATCCAGGTGAACAATATAAAAAGAAAATTCAAACTCTACAACTGGA TGAAAATTCGGAGATTTATTTCCGGACGTTTCGACTGACATCCATCACAC TTCTTCAGCGTCACTAAAATGAACTGGTAGAGCTAACCAGTACTTATTGA CAATAACTAGAAAAACAAAACAATACTATGTATACATAGGGAACAACAGA TTTACACACTGACAGGTACCAATATTGCTATCCATAATAAGTCACTATCC ATGTCGTTCGTAACAATTTGAAAGTGTTTCTTCGTTTCTCCAACCTGAGG CTAGCAATCAATTCCAGCATCCGACTCTAGCACCGAGATTCAACTCCCGA TATAAATGCTCTAGTTGTCTCCTTGACCAAGTGCTGACGCCACGTGTACG TAACATCACGTGACTTGGTGGGAACTTTCGAACAAGGATGCAGAGCGACA ATTAGTTCACCATGTTTTATCAGAACGAAGTTAAGCTGCTCACAAATGTC TCACTTATTTTTTCTATTTTCTACAGAACGCCGCTGTAGCTGTGTGAAAA AGAAAGTGGGAGACGCCGTTGCAGCAGTAATGTTAGAGATTCGTGTTTAT TTATTTATTTATTTATTCTTTGGCTCAGGCCACGGGCCCATATTAAAAAA GGAACAACAGAGACAATGTACAAACATCTACGTAAAACAATAACGACAAA GATATTACATCAAGTAGTGTAGAAACGAGATGGCGGTAGTACTAGTCGAC AATAGTAGGGCCAATGCCCGCTAAGTGCAAAAACCTCAGAATTGCATAGC AGCTGGATTATACCGTTGGCAGACGCAAGGAGACGCGTCACAAATGAATG CGCCAACTTACGCCGCCTGGCGTCGAAGCTATCAACTCGACAGCTCGAGA AGAGTAAAGAGTTACTAGTACTCCTAGGCTGAGACATTAACATCTTAAAA GCGTCATGGTAAGCCACCCGGAGTCTCTGCATTGCACCTGCACTGTGGTT GGTCCACAGTTGTGCGCAGTACATAGCAGAGCACTGAGATATAAAAAGGA TGCGCTTCACCTCTGCCGAGCATAGGAAGAATTTGCGGGAGAGAGAATTT GCTTTAGCGTAGAGCTGTCTAGTTATTTTTCGAATTGAATCGTCATCAGA AAGGTTGGGGGTAATTTGAAAACCCAAGTATGTGGCCGAGGGAACGTAGG CCAGAAGGGTACCGTATAACTCCACTGAGGGTGGCGCACCATTCAAACGT AGGCGGGGGCATGGGAAATACATACAATTGGTTTTCTTATCACAAAATAT GACATCATTATCAGCACCAAATGCCTCACATATACTAATTAACTTTTGTA AGGCTTTCGCTGAAGGACAGATAAGGCATATATCATCTGCATACATTAGG TGGTTTACGGAAACATTGCCAATGAAACAGCCCACTTTGGCACTGTTTAA CTGGTCGCTGAGATCAGCCATATAGATGTTGAATAAAATTGGAGACAATA TGCTCCCCTGGGGAACACCGTTGCTGGAGCTGAAGCTATCAGACACGGTA GTCCCCCAGCGCACTCTGAAGGACAGCATATGAAACCAACATACGATGAT ACGTACTAAATATACAGGCACTCCTCTATTGAGCAGTTTGTTAAACAATG TATAGTGGTTAACACGATCGAAGGCTTTCGAAGCATCAAGAAAGCATACA AAGACTGGGGAGCCTCGACATTTAAAGTAAGAGATAACCTCTTTAAGGGC GAAGATGCACATATCAGTCCCGTGATGCTGTTTGAAGCCAAACTGGTTCG CTGGAGTAGATAAATAGCTTTCCATACGATCAAGAAGAATAGATTCAAAC AGTTTAAACAGGGGACTGGAAATGGCAATCGGCCGGTAGTTGTTTTTGAT TGAGGGGTTTAGATTTTGTTTTTTGATTAACGGGACAAGAACAACATTAA GCAGGACTGGAGGGATGTGGCCGTGAAGCAACATGGCTGAGAATAACAGG GAGAGTAACGTGATCAGTCGAGGCCCCGCGTTCTTCAGGTGTTCGGCTGA CAAACCATCTACGTCACAGGACTTCCCATTAGGGAGCCTGTTAATCGCTG CACATATTTCAAATACAGGTGTAAACATACCAGGGTCATAACTAACGCCT GCTTTGATAGTGTCGTCTACGTAGGACTTACAGGTACTGGCATTGACAGA GTTTAATAACGAACTGTAGTGTTGCCGCCACATATTGACAATGCTGGAGG CACCGCTGTGACCATCCACATTACAAGGAAGGTTGGACCTGGGACCATTT TGGGAACGTAAGGCGGACCAAAATCCCGTCTGCCCCCCCTTATGTAGACT AGAGGCCAGAGCATCTGCCCTGTGTTGAGCGGCAGAGCGTTGGCACTCTC TTAGAGAAAGCTTAAATTTGGCCCTAGTTGTTCTCATTAAGTTCCAAATG GCCCCGTACCTCGGTCGATTGTTATCGCACCATAAAAAGAAAGCATCTCG AGCTGCGGTATGGTATTCTTTAACGATAGAATTCCAACCAGGGATCACAT GGGGAGTTGTGCCGCTCCGTGACGAAAGAGAGGTAGAAGCCGCACTTTTA AGGGCAGCGACTATCTCAGAGGTGAATTTATCAAGATCAGATCTATGTTC AATGTTATTACAATTAGGGTTTTGGCACAAAAGTGAATTAAAAGGCAGAT TTATAGCGGATAACAGGCTGTCGGTGCAGGTCCTGAACCGCGCAAGGTCG TCAGGGGTTGCACGTTCCCACCTGATCCTGTTAGGTGGAGGAATTCCGGG ATCAGCTGTGTTTGTAAACACAGCTGGTGCCGACTCCCAGGCAAATGAAA CCCAGAGAGGGAAATGGTCTGATGAGACAAAGTCGTATAATACTCGCATT TCCGAGATGCTATCATGCATTGTGTCAGTACACAGACAATGGTCTAGCCA GGATGTTGTGCTGTGGGCATCGCTTACATACGTAAATGTTTTTTCAGAGA GCAATGCGATGTCGCTTAATATGAGGTTACAATCATGGCAGAAGGTTTGC AATAGGGGAGCAAATATGCCATCGGGGCGGGTATTAAGGTCGCCCAAAAT ACAGATATTTTCCGTATTGGCCTCTTGAATAATCGATTCTATTTTTCCTA ATTTGTCCAAGTAGATGTCAATATTATTGTAACATTCCGTAGGCATATAT ACACATAACAGAAGTAAATCACTACTATTTACACTATTGATAATCTTAAC AGCTAGGAGTCTGTCATCTTCACACACAATACTCACATTGAAAGTTTTTC GCCACAAAACTGCGACACCGCCATAAGGACGCCCGCGCAGTAGGCCCCCA CCCATGTCCATGGGCGAGGTGCCGTGCGCAATAAAGTCACTGTTCAAACC AGCAAGGAAATTCAAGTCATCTGGCATAAGCCAGTGTTCCTGGAGGAGGA CAAAGTCAGAGACTTTACACAAGTCCTTAACAGCTTCGGCGGAGTTCTTG ACAGAACGACAATTGAAAGATGATACCCTCAATGATTTCAGGTTGCTATC CGTGTTGGATGTGGCCGTCATTGTTCTGGTCTGAGGGAGGGACGTTTGCT GTGAAACCGTCTAACCAGGACACCACAGGGCCAAAAGGATGGTGACAGGA CTTCCTCAGTAGCATCAGTGTCCACGGATACGTGGAAGGAAGTGTAGGAG TCAAACTTCGTGGGAAGGCTCGAACAGGACAGCGTCCAGTCTTGCGACAA GTTGTCGCGCAGGTACTGTTCAACATCTTTGGGCTCAGTGTCGGGTCCCA GACGCGTTACAAAGACCTCGGTGGGCCTGGCCTTGGCCGTCAACAGGGTA GAGGGCTTGTTGCCCGTGCCGACTATAGCTCTGGATTTAGTTTTTTTTCG TTTGACTACACTAAATCCATCCGTGTCAGGAGCCGTAGGGACGCTAGATC TGCGGCGTCGACGAGGCGAGTGGGACGCCGAGGCGAGAGACTTGGGCTTT GTATTATCACCTTGACCTTGGGCGTGTACTTGGGCGGGTCCTTGGGATTT CTTCGTTGCCAAGGGATGCCCGGTCTGTTGGGGGTAGTTGTCAGACACCA CGTCGGCGAAGGTGGCATTACGTGGCGTCGGCACAGTTTGTGATGCCGAC AACCTCATGTTCTTAAGGTCGGCGATTTCTCGGCGAAGGGTTGCAAGTTC TGTCTGCACTTTCATATTGTCGATGGTAGAGGCCCTGACGACTTTCATTT CCTGTCGCATTAGCTGAACCTCCTGAAGACACAGTGTGAAGTCCGTGTGT TCCAGCGTTACAACAGGAAGTCTGAGGGATGCAGACGCAAATGTCGGAAG CGTAAGCGGGTCAGCGGAGTGAAGAACCCGCAAAATGTCGGACATGTTTG TGACGGACTTGTTGTTGCCTTGGCGTTTCTTATTACGTTCGCTGGGCTTG CATGTGTCAAACACTAACTTCTTAGCAACTTCAATCTCCTCCTCGGAATA AGTCTCCAGGCACAGTTTGGAGACAATGTCGCCGGGCATCTTATCCATCT TGTTAACGACGAAGCACAACAGGTCGTTAATGAAGATATCTTTGGACTCA CCATGCGAGGTAGGGGCTGCAGGTGGGAAGCGCTTGTTGTTACATCTTTG GCACAGAATTAAATCCCCTTGGCGGGTCTCAGCCCCGGTGCTGCGACAGT CCTCACAGGTAGGCATACTTGTGATGGGGGGGGGGGCNGCGACAGTCCTC ACAGGTAGGCATACTTGTGATGGGGAGGGGGGCTATCTCGTGCACGCTCA GTGTGACGCCCTGTGTAACACGTTACAGATATACGAAAGAATCTGCCTCA CAGACCTTGTTATTCTACGTAGAAGTGTAGTCTACGCCTAAAACACTCCG CTTTGTTACTCTGTATCAAACAAGGAGGCTGAGATCTCAATAATTTGAGA AAGGCAAATAACTCGCGCTGCATTTGTGACAAAGGTCAGCCATCTTGTCG GCCATCTTGATCT

Coding sequence (CDS) from alignment at Sc0000044:1458065..1465927-

>transcript:BL96950_cuf0 ID=transcript:BL96950_cuf0|Name=transcript:BL96950_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1965bp|location=Sequence derived from alignment at Sc0000044:1458065..1465927- (Branchiostoma lanceolatum)
GTGATCGCGCTTTTGGTTGCTCCGCCAAACAACGGGACTAGAGCGCAGGA
AGGTTTCACCACCCTTCTGACCCAGTCATGTGTCTCGGCCGGTTTGTCCA
TCGGGGGAGCTATTGCAGGATTCGCGACCAAACATAACATCGGCGTTGGA
CCGAGGTTCTCTTACGCCACCAATTCCCTATTGATCGCCGTGGGACTGAT
GACTGGCATCTCCGGAACTATCAATTCGGTTGTCCACATCGGACAAGCCA
GCGGCCTAGCCGGAGTCATCCTCGGCGCCATCGTCTCTTTCCTGTGGGTG
GTGGCCTTCGCTTGGTACATGTCCCGCTTCTGTAGGTGTAACAAGGGGCA
GTCACCGCAACAAGGGGAAACGAACGCCGCTGTAGCTGTGTGAGTGATCG
CGCTTTTGGTTGCTCCGCCAAACAACGGGACTAGAGCGCAGGAAGGTTTC
ACCACCCTTCTGACCCAGTCATGTGTCTCGGCCGGTTTGTCCATCGGGGG
AGCTATTGCAGGATTCGCGACCAAACATAACATCGGCGTTGGACCGAGGT
TCTCTTACGCCACCAATTCCCTATTGATCGCCGTGGGACTGATGACTGGC
ATCTCCGGAACTATCAATTCGGTTGTCCACATCGGACAAGCCAGCGGCCT
AGCCGGAGTCATCCTCGGCGCCATCGTCTCTTTCCTGTGGGTGGTGGCCT
TCGCTTGGTACATGTCCCGCTTCTGTAGGTGTAACAAGGGGCAGTCACCG
CAACAAGGGGAAACGAACGCCGCTGTAGCTGTGTGAGTGATCGCGCTTTT
GGTTGCTCCGCCAAACAACGGGACTAGAGCGCAGGAAGGTTTCACCACCC
TTCTGACCCAGTCATGTGTCTCGGCCGGTTTGTCCATCGGGGGAGCTATT
GCAGGATTCGCGACCAAACATAACATCGGCGTTGGACCGAGGTTCTCTTA
CGCCACCAATTCCCTATTGATCGCCGTGGGACTGATGACTGGCATCTCCG
GAACTATCAATTCGGTTGTCCACATCGGACAAGCCAGCGGCCTAGCCGGA
GTCATCCTCGGCGCCATCGTCTCTTTCCTGTGGGTGGTGGCCTTCGCTTG
GTACATGTCCCGCTTCTGTAGGTGTAACAAGGGGCAGTCACCGCAACAAG
GGGAAACGAACGCCGCTGTAGCTGTGTGAGTGATCGCGCTTTTGGTTGCT
CCGCCAAACAACGGGACTAGAGCGCAGGAAGGTTTCACCACCCTTCTGAC
CCAGTCATGTGTCTCGGCCGGTTTGTCCATCGGGGGAGCTATTGCAGGAT
TCGCGACCAAACATAACATCGGCGTTGGACCGAGGTTCTCTTACGCCACC
AATTCCCTATTGATCGCCGTGGGACTGATGACTGGCATCTCCGGAACTAT
CAATTCGGTTGTCCACATCGGACAAGCCAGCGGCCTAGCCGGAGTCATCC
TCGGCGCCATCGTCTCTTTCCTGTGGGTGGTGGCCTTCGCTTGGTACATG
TCCCGCTTCTGTAGGTGTAACAAGGGGCAGTCACCGCAACAAGGGGAAAC
GAACGCCGCTGTAGCTGTGTGAGTGATCGCGCTTTTGGTTGCTCCGCCAA
ACAACGGGACTAGAGCGCAGGAAGGTTTCACCACCCTTCTGACCCAGTCA
TGTGTCTCGGCCGGTTTGTCCATCGGGGGAGCTATTGCAGGATTCGCGAC
CAAACATAACATCGGCGTTGGACCGAGGTTCTCTTACGCCACCAATTCCC
TATTGATCGCCGTGGGACTGATGACTGGCATCTCCGGAACTATCAATTCG
GTTGTCCACATCGGACAAGCCAGCGGCCTAGCCGGAGTCATCCTCGGCGC
CATCGTCTCTTTCCTGTGGGTGGTGGCCTTCGCTTGGTACATGTCCCGCT
TCTGTAGGTGTAACAAGGGGCAGTCACCGCAACAAGGGGAAACGAACGCC
GCTGTAGCTGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96950gene:BL96950Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96950_cuf0transcript:BL96950_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96950_cuf0-E1BL96950_cuf0-E1-1564476830-212693Branchiostoma lanceolatumexon
BL96950_cuf0-E2BL96950_cuf0-E2-1564476830-212691Branchiostoma lanceolatumexon
BL96950_cuf0-E3BL96950_cuf0-E3-1564476830-212689Branchiostoma lanceolatumexon
BL96950_cuf0-E4BL96950_cuf0-E4-1564476830-212687Branchiostoma lanceolatumexon
BL96950_cuf0-E5BL96950_cuf0-E5-1564476830-212685Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1458065..1465927 -
Properties
Property NameValue
Transcript idBL96950_cuf0
Biotypeprotein_coding