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transcript:BL96949_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96949_cuf3
Unique Nametranscript:BL96949_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96949_cuf3

>transcript:BL96949_cuf3-protein ID=transcript:BL96949_cuf3-protein|Name=transcript:BL96949_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=306bp
LVPGEEDEDDDSARDKGFDICEEPTDIQCRLVGTDYVLGNGDTSADGLTT
CNLEFGAQCEYNCSNYEVRFECRYQMPECTTPGPTTTQPPTTTIPVPTTT
TPPPTTTTPPPTTTTPPPTTTTPPPTTTPPQTTTTPPPTTTTAPPTTTTT
PPTTTTAPHATTTAPPTTTTAPPTTTTAPPTTTTAPPTTTTAPPTTTTAS
ITTTTTPPTTTTPVPTTTPPVPTTTPPPTTTTPPPATTICEPVEVWSEWV
DTHCPPTECADENDTSIGESCYHYVTEPLEDKEAAQIVCQEGGGSLVSLS
SKDEYV
Run BLAST on NCBI

mRNA from alignment at Sc0000044:2119133..2120835-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96949_cuf3 ID=transcript:BL96949_cuf3|Name=transcript:BL96949_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1703bp|location=Sequence derived from alignment at Sc0000044:2119133..2120835- (Branchiostoma lanceolatum)
TCTTAGTGCCAGGAGAAGAGGACGAAGATGACGATTCAGCACGAGACAAA GGATTTGACATCTGTGAGGAGCCAACGGACATTCAGTGCCGGCTCGTAGG AACAGATTACGTGCTGGGGAATGGAGATACCTCAGCCGATGGGCTCACTA CATGTAACTTAGAATTTGGTGCTCAATGTGAATACAAGTAAGTAAGTTCC ATCTACAACCTTATTAGTCTACGGACGATATTCTATATGTACCTTATTTT TCCCAACGATGCCCGCTGTTGTTATGGATAGATTAAAGATAGCTTAATGT CATTGGTTAAAATTAAACAACTTGGCACTAGCACAGAATAAAGACACGCG GTTTGTAGCAAAAAAGAAATGAAAAATACCCTTCGAAGAAATTTGTTTTT ATCCTCAGCCATGATGGCCATATTTTGATATGATTGTACACAAACAAATA CACAAACAGCTAGTTAAGTCTTTTACACCTAAAAATGACCTAATAATCAT TCTCTTTTCAACTACGTTTTATGTGTAGCTGTTCAAACTATGAAGTACGG TTCGAATGTCGCTATCAAATGCCAGAGTGCACAACGCCTGGACCAACCAC AACGCAACCTCCAACGACTACTATACCAGTACCAACAACTACGACACCAC CACCCACAACTACTACACCACCACCTACAACTACTACACCACCGCCCACA ACTACTACGCCACCACCCACAACTACACCCCCTCAAACAACCACTACACC ACCACCAACGACCACTACAGCGCCACCTACAACCACTACAACGCCACCTA CAACAACTACAGCGCCACATGCAACAACTACAGCGCCACCTACAACAACT ACAGCGCCACCTACAACAACTACAGCGCCACCTACAACAACTACAGCGCC ACCTACAACAACTACAGCGCCACCTACAACAACTACAGCGTCAATAACAA CCACTACAACGCCACCTACCACAACTACACCAGTACCAACCACTACGCCA CCAGTGCCAACTACTACACCACCACCCACCACAACAACACCACCTCCAGC AACCACAATATGTGAACCAGTAGAAGTATGGTCTGAATGGGTTGATACAC ACTGTCCTCCTACAGGTAAATTGGTGTTGACAATACCCTTGACATATCCT TGTCTTGTCTGCATTTTTTACCCAATCTATTTCATTGATTTTATTCATGA ATTCGGTCATTGGCCTTTAGCTTATTCTACGCCGCTGTCGCATAGTTACT TCCGTATTCGTTGCATTTTGCTCCAGTATAACGCCTTTAATTGAGGAATA CCCCCAACCCTTACACATCCGGGACCCATATACAGGCACTGTAATATGCA ACCTATATTATCTGTAAACGTTTAAACTATGCTTTAGTGCATATCTAATT TGCATAAGTATCATTTTATGATAGCAAATCTTTGAATAAGTATTGCAAGT AATTTATTGTAGAATATATATTTCTGCACTTAGACAAAATTGCAAATGGG GAATTCAAGGTTGGTACGACAGAAGACGACAATGATTTTTCGTTTCCTCC TGTTCAGAGTGCGCGGATGAAAATGATACGTCTATTGGAGAATCCTGCTA TCATTATGTAACGGAACCACTGGAGGACAAGGAGGCCGCACAAATAGTCT GCCAAGAAGGTGGTGGCAGCTTGGTGTCTTTGTCTTCCAAAGATGAGTAT GTG

Coding sequence (CDS) from alignment at Sc0000044:2119133..2120835-

>transcript:BL96949_cuf3 ID=transcript:BL96949_cuf3|Name=transcript:BL96949_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2754bp|location=Sequence derived from alignment at Sc0000044:2119133..2120835- (Branchiostoma lanceolatum)
TTAGTGCCAGGAGAAGAGGACGAAGATGACGATTCAGCACGAGACAAAGG
ATTTGACATCTGTGAGGAGCCAACGGACATTCAGTGCCGGCTCGTAGGAA
CAGATTACGTGCTGGGGAATGGAGATACCTCAGCCGATGGGCTCACTACA
TGTAACTTAGAATTTGGTGCTCAATGTGAATACAACTGTTCAAACTATGA
AGTACGGTTCGAATGTCGCTATCAAATGCCAGAGTGCACAACGCCTGGAC
CAACCACAACGCAACCTCCAACGACTACTATACCAGTACCAACAACTACG
ACACCACCACCCACAACTACTACACCACCACCTACAACTACTACACCACC
GCCCACAACTACTACGCCACCACCCACAACTACACCCCCTCAAACAACCA
CTACACCACCACCAACGACCACTACAGCGCCACCTACAACCACTACAACG
CCACCTACAACAACTACAGCGCCACATGCAACAACTACAGCGCCACCTAC
AACAACTACAGCGCCACCTACAACAACTACAGCGCCACCTACAACAACTA
CAGCGCCACCTACAACAACTACAGCGCCACCTACAACAACTACAGCGTCA
ATAACAACCACTACAACGCCACCTACCACAACTACACCAGTACCAACCAC
TACGCCACCAGTGCCAACTACTACACCACCACCCACCACAACAACACCAC
CTCCAGCAACCACAATATGTGAACCAGTAGAAGTATGGTCTGAATGGGTT
GATACACACTGTCCTCCTACAGAGTGCGCGGATGAAAATGATACGTCTAT
TGGAGAATCCTGCTATCATTATGTAACGGAACCACTGGAGGACAAGGAGG
CCGCACAAATAGTCTGCCAAGAAGGTGGTGGCAGCTTGGTGTCTTTGTCT
TCCAAAGATGAGTATGTGTTAGTGCCAGGAGAAGAGGACGAAGATGACGA
TTCAGCACGAGACAAAGGATTTGACATCTGTGAGGAGCCAACGGACATTC
AGTGCCGGCTCGTAGGAACAGATTACGTGCTGGGGAATGGAGATACCTCA
GCCGATGGGCTCACTACATGTAACTTAGAATTTGGTGCTCAATGTGAATA
CAACTGTTCAAACTATGAAGTACGGTTCGAATGTCGCTATCAAATGCCAG
AGTGCACAACGCCTGGACCAACCACAACGCAACCTCCAACGACTACTATA
CCAGTACCAACAACTACGACACCACCACCCACAACTACTACACCACCACC
TACAACTACTACACCACCGCCCACAACTACTACGCCACCACCCACAACTA
CACCCCCTCAAACAACCACTACACCACCACCAACGACCACTACAGCGCCA
CCTACAACCACTACAACGCCACCTACAACAACTACAGCGCCACATGCAAC
AACTACAGCGCCACCTACAACAACTACAGCGCCACCTACAACAACTACAG
CGCCACCTACAACAACTACAGCGCCACCTACAACAACTACAGCGCCACCT
ACAACAACTACAGCGTCAATAACAACCACTACAACGCCACCTACCACAAC
TACACCAGTACCAACCACTACGCCACCAGTGCCAACTACTACACCACCAC
CCACCACAACAACACCACCTCCAGCAACCACAATATGTGAACCAGTAGAA
GTATGGTCTGAATGGGTTGATACACACTGTCCTCCTACAGAGTGCGCGGA
TGAAAATGATACGTCTATTGGAGAATCCTGCTATCATTATGTAACGGAAC
CACTGGAGGACAAGGAGGCCGCACAAATAGTCTGCCAAGAAGGTGGTGGC
AGCTTGGTGTCTTTGTCTTCCAAAGATGAGTATGTGTTAGTGCCAGGAGA
AGAGGACGAAGATGACGATTCAGCACGAGACAAAGGATTTGACATCTGTG
AGGAGCCAACGGACATTCAGTGCCGGCTCGTAGGAACAGATTACGTGCTG
GGGAATGGAGATACCTCAGCCGATGGGCTCACTACATGTAACTTAGAATT
TGGTGCTCAATGTGAATACAACTGTTCAAACTATGAAGTACGGTTCGAAT
GTCGCTATCAAATGCCAGAGTGCACAACGCCTGGACCAACCACAACGCAA
CCTCCAACGACTACTATACCAGTACCAACAACTACGACACCACCACCCAC
AACTACTACACCACCACCTACAACTACTACACCACCGCCCACAACTACTA
CGCCACCACCCACAACTACACCCCCTCAAACAACCACTACACCACCACCA
ACGACCACTACAGCGCCACCTACAACCACTACAACGCCACCTACAACAAC
TACAGCGCCACATGCAACAACTACAGCGCCACCTACAACAACTACAGCGC
CACCTACAACAACTACAGCGCCACCTACAACAACTACAGCGCCACCTACA
ACAACTACAGCGCCACCTACAACAACTACAGCGTCAATAACAACCACTAC
AACGCCACCTACCACAACTACACCAGTACCAACCACTACGCCACCAGTGC
CAACTACTACACCACCACCCACCACAACAACACCACCTCCAGCAACCACA
ATATGTGAACCAGTAGAAGTATGGTCTGAATGGGTTGATACACACTGTCC
TCCTACAGAGTGCGCGGATGAAAATGATACGTCTATTGGAGAATCCTGCT
ATCATTATGTAACGGAACCACTGGAGGACAAGGAGGCCGCACAAATAGTC
TGCCAAGAAGGTGGTGGCAGCTTGGTGTCTTTGTCTTCCAAAGATGAGTA
TGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96949gene:BL96949Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96949_cuf3-E1BL96949_cuf3-E1-1564476830-213442Branchiostoma lanceolatumexon
BL96949_cuf3-E2BL96949_cuf3-E2-1564476830-213439Branchiostoma lanceolatumexon
BL96949_cuf3-E3BL96949_cuf3-E3-1564476830-213437Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96949_cuf3transcript:BL96949_cuf3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:2119133..2120835 -
Properties
Property NameValue
Transcript idBL96949_cuf3
Biotypeprotein_coding