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transcript:BL96947_cuf9 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96947_cuf9
Unique Nametranscript:BL96947_cuf9
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96947_cuf9

>transcript:BL96947_cuf9-protein ID=transcript:BL96947_cuf9-protein|Name=transcript:BL96947_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=143bp
VLFPMSMIVTVVFWGMYAVDRDLIFPAALDKIIPPWVNHVWHTTVVPVLL
LEMYLVHHRHPSRRAGLTGAVTVGIVYLIWVLIVAQVGGFWVYPFMAAMS
NFQFFLFCCFVAVIGCSFYLLGEFCNKIFWGSMETSRKGKKRA
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1390139..1395123+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96947_cuf9 ID=transcript:BL96947_cuf9|Name=transcript:BL96947_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=4985bp|location=Sequence derived from alignment at Sc0000044:1390139..1395123+ (Branchiostoma lanceolatum)
TGTGCTGTTCCCTATGAGCATGGTAAGTTCATAGGTGAGAGGTCAGTAAA TTCATAGTTGAGAGATTGTAGGTAATACAGGACTATGTATTGGCTTCTAT GCTGTTCCCTAATGAGCATGGTAAGTTCATAGTTGAGAGGTTGTAGGTAA AACAGGACTATGTGCTGGCTTCTTTTTTGCTGCTCCCTATGAGCAAGGAG GTTATATAACCTCCTTGCTATGAGCATGGTAAGTTCATAGTTGAGAGGTC GTAGGTAATACAGGACTATATACTGCCTGCTGTGCTGTTCCCTATGAGTA TGAGCATGGTTCATAGGTACTAGATAAGTATAAGTAGCCAGTTGATACTA TCTACTTTTGACTACATTGTATAGCCTAGAACCTTTCTGCACTTTGTACT TGTTTAGTATAAGTAGTTCTTCTTCTTTCTTGTACTTTTCTCTATTTGTG TATGCTATAATTCTGTGCCTTCAGAGCTCTATTACCACGTAATTGCTTTC TTGAAGGTGTTCTTTATTTGTGTGCGCTATAACTCTGTACGATAACTTAA TAAGAGCTCTATCATCACATTATGCCACAGATCGTAACAGTCGTGTTCTG GGGGATGTACGCCGTTGATCGAGATCTGATCTTTCCAGCGGCCCTGGACA AGATCATCCCACCCTGGGTCAACCACGTCTGGGTAGGGTTGTTTGTTTGT TTGTTTGTTTGTTTTATCCCAATTGCGATTAGTGATACAATATTTACATA ATGATAATCCTTTCTGGACTCCTTAGTATGATAAAAGATGTGTCTCCATC TAAGCAGCAAAAGGAGGTAGAGACCAAAATGATGTCAATCACATGAATAT TGAGTTTCATCATAATCTAATTGTTTTGTTTATTCATTTATGAATCTTTA GAGTGGTCCCTTCATTTAACTAAGTAACTGATTTCCAAGGGAGCCCTAAC AAAATCATAAATCAGGATACAGAAGGATAATTCAACATAAACTGAATCAG TGAATGAATATTACAAATATTACATTTCACAATTTGTTTAAAACACCATT AACTGTTTCTCCAGCAGTGTTATGGGCCTGTCCTTTTTATCTTTCTTTTC TCCACTGACTATTATGACTGCTCTTACGAAACTTTCCATTTTGCTGTCCA CAGCACACGACCGTAGTGCCTGTCCTGTTGCTGGAGATGTACCTGGTTCA CCACAGGCACCCTTCGCGTCGGGCAGGCCTCACCGGAGCGGTCACCGTTG GGATTGTATACCTTATATGGTGAGGCCCCAAATTCTTTCTGGCTCCTAAT TTTGATTTCTATCTTGTTAAAGCCCNGCTCCTAATTCTGATTTCTATCTT GTTAAAGCCCGAATTTATGCTCACTGTGGTTTGAATGTTTGAAAACGCTA TTCCTGACCAGTAAAATCGAGGAAAAAAGGAATGAATCTTAAGACCCACA ACTGGACAAAAGATATAAAAACCCAGTGATAGTTTTCTTTCCTTCATATT CTTCCAAAATACAATCCTAAGACAGGTGAAACAGTTTGAAATGAAGCCTA AAAAATCATGTGACACCTTCCATGTCAAAATCGAATGGGCGCCCAGCTGT CTGAAAATTCAAGAAATACATGTAGAATGAAATGAAATGAAATAGAAAAT AAAATGAAATGAAATAAACATTCTTTCTTTCCATCATTTGTAGTTCTTGA GAAAATGACAGCGAAGAGACTGGTATTTGACCGGTTTCGACTTTATTGTC TTTTTCAAGAATCTTCAAGAATTCTTCCTTTCCATCCTTGCAGGGTGCTG ATCGTTGCGCAGGTCGGAGGGTTCTGGGTTTACCCCTTCATGGCGGCCAT GAGCAACTTCCAGTTCTTCCTATTCTGCTGCTTCGTGGCGGTTATAGGAT GCAGTTTCTACCTACTAGGGGAGTTCTGCAACAAAATCTTCTGGGGTAAG TGCTCATTTTTTTCTTTTCATTTTTCTATTTTATTGAAATTGCAACATCG CTATTCAATGGACAACCTAGACAGTAATAGAACACAATTATACCTTAGCA TGAGAGTTCATCTGTGTTGGTAGAATTCATTATCAAAATTTGGGGTAAGT CCCAATTTCTCTTGTACTGTTGGAAGAAAAGTTTAGTCTTGTTAATAACA ATTATACCTGTAACTAAGACCTAGGTTGCATGTACACACGATAATACATC ATAACAGTTACATATAACTTAGCCTACATTAATAGTATTAAGCTCTCATT GTTCCTCGATGTAAACTTAACGCAAATAGTTTGGGCATTCAGTTTTGGTT CTCTGTGATTACTAAGCAAATTCATTGTACTACATGTATGTATCATCTGA AAGCTTATCCTTTACAATGGACTGCATATGTGAGCTAGTTCTGAGAAAAT TCCCACCTTCATAATTATGTCATTTTATTCAGCTGAGAGAAAACTTGTTA GAAATTACTTTATTCATTACATCCCTTAACACTATCATGGTTCTTTTACA TTTTCAGGATCCATGGAAACGTCAAGAAAGGGGAAAAAGAGGGCATAATA TTCTCAGCAGTAAAGGAGGAATTTTAAGATGTCTGCATATTTCCAGCACT GTCTTAAAGGTCAATAATGATCTAATTTAACCATTCTAAAAGAAGAGAGT TATAATCAAAAATCTGTTTTTGAAAGTTGTACAACAATGCATATATGAAA AGTCGTATTCTATTGCCCAGTTATGCTTTTCAAATTGGAACATGAAATAC TGCAAATTTTGAAATGTTTGCAGTGGTTTTCAGGGGACCTCTCCATTGTG AATTGATGACATTGCAAATATCCCTGTTTCCGATGTATTACTACTGTACT GTAAGGCCACACCAATTTGATTTCTTGGTTAACAGATTTTTATTTTCCAA AAAATAAAAAAAACTTTGAAAAAAAAGAAGGAAAACAGAGGGCTGGCCCA GCCTTCTGTTTTCATGATTTTTTTTTTCTAAAATTTTTTTTTTTTGGAAA ATAAAAATCCGTTAACCAAGAAATGAAATTGGTGTGGCGGAACGGGAGAA TGTTTTAACCACAAACTTAAACACTGCAAAAACCTCCTTTCTCCTTCTTA TTAACAAAGTTAAGCCCCTAAAAAAATAAACAAATTTACAGTATACTGAC TATATTGTCACCAATCTATCACTACATGATATCTTAACATTTTTGCAACA ATCTGACAAAATAGTAAATACTTAACATATGTACAGGCAAACATTTTGTT ATTTTCACAATTACGTATTATTTGTTTTGTTTTATATCCATATAAGTGAT ATACAATATGCACTATTCTTTCTGGAGTCCCTATACAAATAAATAAAATT AAACAAAAACTATACATTCAATTGGTTCGTCGATGAAGATTAGACATCCA GGTAATAAGATACGCCAAAAAGCAATTACTCAAACAACTGGATATGATTT TGGAAACGGTCAGACGTTTCAAGTAGCATCCACTACTTTTCGTCAGTGAC TGTGAGCAAGATCAGTTGAACAGCAGGTTTATAACCACGAACTATGAATT GATATGCAAATAAGGAGAAGACAAATTTTTAGATAGTCCAATAGAAAGCG AATTAGACAACTCAAGACAAGGTTGAAGTAAAAGGGGACAATAGCTCCTA TTGTTTTAATATAGGAGCTAAAGCTGGTTTGCCCCCAAGGCTATGTCCCA AGTGCCAGACAGTTCCACCCTTAGCCCTCCTTTCCTGTTGAGGGTTGGAT TGTATATCCTCTATTCAATTGGTTAACTAAGAATTCGACAAAACAAATGT GGTGAAATCAAAAATAAACGAGAGATGAATGAGAGAGGTCAGAGGTCAAC ATAATTGAAAACATAATCTGGATGTAGTAGACAGAAAACCAGAAGTAATC ATAAATTACGAATATAAGTAACTTAAATTTTAAAAAAATGATTCACTCAC AATCAGGAAGAGTACTTGAAGCACAAGCTTATCTATGCAAAAACATCTCA CAGTCTTACCATTTCAACCTCAGGAACATTTTATACATGTACATACTTGG TGTAGGTGAGGGGTGTGTTGTTTTATGTGTGACAAGCTGTCAATTATTTT GTCAAAATGGTTCAATTATGTCATCAATTATGTAAAGGATCAAATTATTG GTGTAAAAAGGTTTTGTGTTTAACTGTGAAGTTCAAGTTGCTCGTATTGA AATCTTAGGGATTACTGGTTATTTCAATGAAGAATCATGGACTTTTATGT GACTTGCTTCCAAAAATCACCATTTTGAGCAATGTTCAAGTAAGATGTTA TTAGATAAGAAATTGCAGTATTTGAGCCGTGACTGTGAGATGTGAAAAAA CACAACAATTTCCAGGGTTGAGCTATTTTAACTAATTACAATTCAAGAAC CGTTTAAGAATATAGCTATATCTCTCAGAGAGAATACTGTCTGGCAGATT GTGCAAGAGACTCTGATCGGGATATTTACCGGCAGAATTGGGAAATTTCG TTGTGCATGTAAATTATTCCCTTTAAAGACAGTCAGAAATGTTCAACTTC GATTCATGTCACTAGATTGACTTGGTATCTATGGTATCTAACATGCAACA TAGTTTACAACACATGGTTACAAACTTCCATCACCCTAACAATAACATGC CATCTACAAATTATTTCAAGCAAGACTATTAAAGGTGTATAAAATTCGAT TGTTTCCCATATGTTTATTGTCTTTGTCAACCGGGCATGCCCTTAATGTA ATTGCAGGGTAGCCCTAGCTCTATTTCTTTAGGCCGTATATATAGCCTAT TTCAGTCATTTCCCATGTCTAACATTAACAGTCAGTGGCTTTTTCCTACC ATAGCGTGTTATTGAAAAGCAGACAAAACAATAAAATATAATTGATACAT TGAAACTATAAGGTGCTATACATATATCCATATTTAAGGATAAAGAGTTC ATCTTTTTGTAAGAGACACTCACTTACTTACTCAC

Coding sequence (CDS) from alignment at Sc0000044:1390139..1395123+

>transcript:BL96947_cuf9 ID=transcript:BL96947_cuf9|Name=transcript:BL96947_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=2592bp|location=Sequence derived from alignment at Sc0000044:1390139..1395123+ (Branchiostoma lanceolatum)
GTGCTGTTCCCTATGAGCATGATCGTAACAGTCGTGTTCTGGGGGATGTA
CGCCGTTGATCGAGATCTGATCTTTCCAGCGGCCCTGGACAAGATCATCC
CACCCTGGGTCAACCACGTCTGGCACACGACCGTAGTGCCTGTCCTGTTG
CTGGAGATGTACCTGGTTCACCACAGGCACCCTTCGCGTCGGGCAGGCCT
CACCGGAGCGGTCACCGTTGGGATTGTATACCTTATATGGGTGCTGATCG
TTGCGCAGGTCGGAGGGTTCTGGGTTTACCCCTTCATGGCGGCCATGAGC
AACTTCCAGTTCTTCCTATTCTGCTGCTTCGTGGCGGTTATAGGATGCAG
TTTCTACCTACTAGGGGAGTTCTGCAACAAAATCTTCTGGGGATCCATGG
AAACGTCAAGAAAGGGGAAAAAGAGGGCATGAGTGCTGTTCCCTATGAGC
ATGATCGTAACAGTCGTGTTCTGGGGGATGTACGCCGTTGATCGAGATCT
GATCTTTCCAGCGGCCCTGGACAAGATCATCCCACCCTGGGTCAACCACG
TCTGGCACACGACCGTAGTGCCTGTCCTGTTGCTGGAGATGTACCTGGTT
CACCACAGGCACCCTTCGCGTCGGGCAGGCCTCACCGGAGCGGTCACCGT
TGGGATTGTATACCTTATATGGGTGCTGATCGTTGCGCAGGTCGGAGGGT
TCTGGGTTTACCCCTTCATGGCGGCCATGAGCAACTTCCAGTTCTTCCTA
TTCTGCTGCTTCGTGGCGGTTATAGGATGCAGTTTCTACCTACTAGGGGA
GTTCTGCAACAAAATCTTCTGGGGATCCATGGAAACGTCAAGAAAGGGGA
AAAAGAGGGCATGAGTGCTGTTCCCTATGAGCATGATCGTAACAGTCGTG
TTCTGGGGGATGTACGCCGTTGATCGAGATCTGATCTTTCCAGCGGCCCT
GGACAAGATCATCCCACCCTGGGTCAACCACGTCTGGCACACGACCGTAG
TGCCTGTCCTGTTGCTGGAGATGTACCTGGTTCACCACAGGCACCCTTCG
CGTCGGGCAGGCCTCACCGGAGCGGTCACCGTTGGGATTGTATACCTTAT
ATGGGTGCTGATCGTTGCGCAGGTCGGAGGGTTCTGGGTTTACCCCTTCA
TGGCGGCCATGAGCAACTTCCAGTTCTTCCTATTCTGCTGCTTCGTGGCG
GTTATAGGATGCAGTTTCTACCTACTAGGGGAGTTCTGCAACAAAATCTT
CTGGGGATCCATGGAAACGTCAAGAAAGGGGAAAAAGAGGGCATGAGTGC
TGTTCCCTATGAGCATGATCGTAACAGTCGTGTTCTGGGGGATGTACGCC
GTTGATCGAGATCTGATCTTTCCAGCGGCCCTGGACAAGATCATCCCACC
CTGGGTCAACCACGTCTGGCACACGACCGTAGTGCCTGTCCTGTTGCTGG
AGATGTACCTGGTTCACCACAGGCACCCTTCGCGTCGGGCAGGCCTCACC
GGAGCGGTCACCGTTGGGATTGTATACCTTATATGGGTGCTGATCGTTGC
GCAGGTCGGAGGGTTCTGGGTTTACCCCTTCATGGCGGCCATGAGCAACT
TCCAGTTCTTCCTATTCTGCTGCTTCGTGGCGGTTATAGGATGCAGTTTC
TACCTACTAGGGGAGTTCTGCAACAAAATCTTCTGGGGATCCATGGAAAC
GTCAAGAAAGGGGAAAAAGAGGGCATGAGTGCTGTTCCCTATGAGCATGA
TCGTAACAGTCGTGTTCTGGGGGATGTACGCCGTTGATCGAGATCTGATC
TTTCCAGCGGCCCTGGACAAGATCATCCCACCCTGGGTCAACCACGTCTG
GCACACGACCGTAGTGCCTGTCCTGTTGCTGGAGATGTACCTGGTTCACC
ACAGGCACCCTTCGCGTCGGGCAGGCCTCACCGGAGCGGTCACCGTTGGG
ATTGTATACCTTATATGGGTGCTGATCGTTGCGCAGGTCGGAGGGTTCTG
GGTTTACCCCTTCATGGCGGCCATGAGCAACTTCCAGTTCTTCCTATTCT
GCTGCTTCGTGGCGGTTATAGGATGCAGTTTCTACCTACTAGGGGAGTTC
TGCAACAAAATCTTCTGGGGATCCATGGAAACGTCAAGAAAGGGGAAAAA
GAGGGCATGAGTGCTGTTCCCTATGAGCATGATCGTAACAGTCGTGTTCT
GGGGGATGTACGCCGTTGATCGAGATCTGATCTTTCCAGCGGCCCTGGAC
AAGATCATCCCACCCTGGGTCAACCACGTCTGGCACACGACCGTAGTGCC
TGTCCTGTTGCTGGAGATGTACCTGGTTCACCACAGGCACCCTTCGCGTC
GGGCAGGCCTCACCGGAGCGGTCACCGTTGGGATTGTATACCTTATATGG
GTGCTGATCGTTGCGCAGGTCGGAGGGTTCTGGGTTTACCCCTTCATGGC
GGCCATGAGCAACTTCCAGTTCTTCCTATTCTGCTGCTTCGTGGCGGTTA
TAGGATGCAGTTTCTACCTACTAGGGGAGTTCTGCAACAAAATCTTCTGG
GGATCCATGGAAACGTCAAGAAAGGGGAAAAAGAGGGCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96947gene:BL96947Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96947_cuf9transcript:BL96947_cuf9-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96947_cuf9-E1BL96947_cuf9-E1-1564476830-212599Branchiostoma lanceolatumexon
BL96947_cuf9-E2BL96947_cuf9-E2-1564476830-212601Branchiostoma lanceolatumexon
BL96947_cuf9-E3BL96947_cuf9-E3-1564476830-212603Branchiostoma lanceolatumexon
BL96947_cuf9-E4BL96947_cuf9-E4-1564476830-212605Branchiostoma lanceolatumexon
BL96947_cuf9-E5BL96947_cuf9-E5-1564476830-212607Branchiostoma lanceolatumexon
BL96947_cuf9-E6BL96947_cuf9-E6-1564476830-212610Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1390139..1395123 +
Properties
Property NameValue
Transcript idBL96947_cuf9
Biotypeprotein_coding