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transcript:BL96946_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96946_cuf0
Unique Nametranscript:BL96946_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96946_cuf0

>transcript:BL96946_cuf0-protein ID=transcript:BL96946_cuf0-protein|Name=transcript:BL96946_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=221bp
FSNKMAAVSKTKERVLAVTRPGIKTDEVIDFYKTWAKEYDQDHVGGGANY
TGPRKVAEAVAAVLGERRDTRVLDVAAGTGFLGVELSKFGFSNVDALDAS
QEMLDVAKTKNVYKNFLKEFLGPNRLNIDDDTYDVVTGSGLFSNGHVKSD
CLDELIRVVKPGGLVCLALREVLLRTSEDCKALEPRMAALQSEGRWEQVR
RDVFPGYVIGFDGVVYLFKVT
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1365193..1370199+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96946_cuf0 ID=transcript:BL96946_cuf0|Name=transcript:BL96946_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5007bp|location=Sequence derived from alignment at Sc0000044:1365193..1370199+ (Branchiostoma lanceolatum)
ATTTTCGAACAAGATGGCGGCTGTGTCGAAGACTAAGGAAAGGGTCCTGG CTGTGACTCGACCTGGAATTAAGACGGATGAGGTGATTGACTTCTACAAG ACGTGGGCGAAGGAGTATGATCAGGTATGGTCTCACCTGAGTGATAACGG GGTTGAAAAGTATCCGCTTCTTTTTGTGTGTTCTTTTTACTTCATTCTGT ACACATGAAAAGTTGGTGTCCTTGACGCCCAAATTATTGTGCGTGGCCGT AGCCTAACGTTCTTTTAGGTCATTCTGTACACATGAAAAGTTGGTGTCCT TGACGCCCAAATTGTTGTGCGTGGCCGTAGCCTAACGTTCTTTTAGGTCA TTCTGTACACATGAAAAGTTGGTGTCCTTGACGCCCAAATTATTGTGTGT GGCCGTAGCCTAAGTTACATGTAACGTAACATGACCTATTTACGTGCAGA ACCTATTTACGTCCGGTTCGGCTCATGTCCACATGTCGCGGTGTATTATG CCAAAGCCTGTTCTAATGAGCAATAAAGAACATCATAAGTATGATCCTTA GCCATCTCTTTAATTTTTGCACAGCAAAACATAATGGCCATGCGTTTACC ACGTGAACGCCACGTGCCGCGCATGTGGGGGGAATTTACAGATACGACAT GGGTTTTTTCCATCGCGTTAAGCAAGTGGCCGGACAGACATTGTGATTTT ACTATCATTTGTCTGCAGACTACTTTGGACAATTACTGTGCATTTTTTTC TGGTCTATGTTCTTCAAGCATAGCGCTAGAAGGGAATAGATTCAGAAGTG GACGATAATGGGTTACCCTAGCACAATTGTTCATCATATACCTCAGTATA AATACATGCTCGCACGGCGTTAAACAGGCGGAGAAAAACTTACAGACCAT GCATTTTCGTTTTAGAAGAGCTGATATTTCTGCCCATGGGTTTGAAATTT GGCTCTGTCCGCGCGGTTTTAAGATAAATACGTTTTGAATAAATCGGACA TTAATTGGTCATGTTACGTTAGAACCCAGCGCAGAAGAAACGCGGATCCG CAGAAATCCTCAGAAAAGAACTTTGCAACAGAACTGAGTCAGCTTACAGA TGTGATCTTAAATACGTGACAGAGACTGCCATTCTCGTATAGGGCTGTAT AGCCATAGTCGATGCTAGGGCTGAAGTGAATTAGGATTTTACCATGATCG ACGAAGGCCATATATATATATAGCACCCAGCGCATGGCATTTTTCTATGA TTATTTGATTCTAAACCATTCACCACTGATAAAAGCTTTTCAAATTAAAA GAAATCAACAAATTTAAAAGATTAAAGATTGAACAGTCAGAATACAGTAA TTTCTTACCAATGTTACTCATCGTCCTTAGTAAGCCCTAAGGCGCTGTCT CTTATTCTGGGTCACAAATGATGGCGGCGTATTCCACTTGGCTCTCCGTG TGATCATTGCCTGTATAGCGGACGTACTGTGGAAATGAAAATTTGCACGG TGAACTTGACCTCTGAGCATGCTAGTTTAGTTTTGGAACAAGATGGCGGC TGAGTTGAAGGTTAAGGAAAGAGTCTCCGCGTGATTCGCCCCGGAATTAA GACGGACGAGGTGATCATCTTTTCAATACGTGGTCTAAGGAGTTTTTCTC TCACATGACGGTGTTTAAGACTGTACCTTTTCTTATTTTTTTTCCTACTA ACATGATTCCATCAGGGTATATGATTCCGCCACCCTGAAAAAATACGTCC AAACAGATCTCCAACCCAACGTCCACCAGTTTAATGCAATCCTGCATATC TAAACTGTGCATGCCCGGGGGATGCTGCACTAGAGATCTCTCAAACCCAC TGATTTTGAAAGTGGCAGATATATGCAACCCAGCGGATAGATACTAATAG AGGTTTAACATAAGGCCCGATGGTCGTCTTTTGAGTATAATTTTTTCACA ATCATTGGAATATGATTGCTTCCCTGTTTTCACCATTTACCGCTGATGGA AGCTTTTCAAAGAAAAAGGTCAACAAATGATTGAACACTCAGAATGCAGC CACTTACTTGCTAATGTCATCTTGTCCCTGATGAGACATAAAGTGTTGGT TTTTTAATGGGTTAGGAAAGTGTACGCCTATACGCAGTCGGCAAACAAAT CGAGTTTAGATATTATGCTTTTTGATGATCACTCTCTACATTTGGAAAGT CAAATACAAATAGATATACAACGTGCTCAGATTTTATCGAATTAGAACGT TATATGTAAGTGGTGCTAATGTTCACGAGATCATGCATATAATATCCCAA AAATGCAAATTAGATTGGTAAACAAACGAGTTTGGATATTGTACTATTTC ATTCACCGCACACAGAGTCCCAAAAATATGGATTGGCGCCATGTCATTTG TGCAAACTAGTAACGAGAAAATGCAAATTTGATGTAATTGATAAACAAAT CGAGTTTTGATACTGTAATTCTTGTTTCAGTTTTGTACTTTTGACGATAA CTCACTGCATATGGAAAGTCCCCAAAATATGTGTATACAGATTTCATTGA ATTAGGACCATGCCAGTGGTACAAATTGGTAACGGGAGCAGGTAAAAGTC CTAAATATGCAAATTGATGTGAATGCCTAACAAATCGAGTTTAGATATTG TAATTTTGATAAACACTCGGTCCATATGGAATGTCCCAAAGAACGTGGAT AGATGTATGCATATTTCATTAAGTTACGACCATGTCAGTCGTTCAAAACT GCTTACGAGCGCATGTGAAATGTCCAAAATATGCAAATTAATGGTCAAAC AAATCGAGTTTGGATATTGTACTTTTTGATGATCACTCGCTTCATATGCA ATATCCCAAAAAATAGATGTATGCAAATCTCATTGAATTAGCTCCATAGG ACCATGTCAGTGGTGCAAACTGGTTACGAGAGCTTGCGAAATGTCCTTAA TATGCAAATTAGATGTAATTGCAAAACAAATCGAGTTTGGATACCAGTAT TGTTCTCTTTGATGATCACTCACTGCATATTAAATGTTCCCAAAAAACAG ATGAATGCAAATGAACTAGGACCATGTCAGTGGTGAAACCTGGTTACGAG AGCATCCAAACTGTCCCAAAAAATGCAAATTAGATGTATGAAATATCGTT TACATGATGCAGGATCATGTCGGCGGTGGCGCGAATTACACCGGACCGCG GAAGGTTGCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAGAAGAGACACCA GGGTTCTGGACGTGGCCGCAGGGACAGGGTTCTTAGGAGTGGAGGTAGGG ATGAAATACTAGTATGTTCTATTTCATGTTTTTAGGCAACTAAATAACTA TATAAGCGCGGGGTGGTCCTGATGTTCAAGGATAAGGATCATGACAATTT TTTTTATATTTCGGGTCGGTGCAATTGTTTTATAATTATTCTATAATAAT TCTATAATATTTTCGGTTTTTTTAAATTCTGTATTCATGTCTACAAATGT GCAAAATATGTATGGATCGATATTTGCTTTCAGATCTGCATTTTCTTAAT TATGCATTTCATTTTTCCTAAAATTTTGTGACCAAGCCCTCTCTTGTTCT ACCGAAATTAGGACATAACCTTTTCGACTTTACTTTTGGGAGCGCATTTC TTAACAGCGACACCTGTGCTGCAGTGCAAAGTAAACCAGTCAGAATTACC CTGAGGAAGGTGTCAGATGGTCACCTAAACAATTGGTTGTGAACAAAGAG TTTTTTATTCATTGTTTTTCGACTTTTTCCAGTTGTCTAAGTTCGGTTTC TCCAACGTGGACGCCTTAGACGCCAGTCAGGAGATGTTGGACGTCGCCAA GACTAAGAACGTCTACAAGAACTTCCTTAAGGAGTTCCTGGGGCCGAACC GTCTTAACATCGACGATGGTGAGAATCGAAACATTCTAGACTTATGGAAA AACATTAGATATAGTTCTCTTGAACATACAGAGGGATGTAATTCATCACT GTTATAAGAAAAACGGAAAGAAAAAGTTGTTGTGAGCTAAATGGAAAAGC TTTAATAACGTTGATTTTTTAGTAATGGATTTGAGATTGTTGATTTGTTA AGTGTTTGTTTTTGTAAAGATTGCAATTTCCGTACACAAAGTAAAGTTCC ATCAGTCTCAAGTTGGAATGACCCAAAGCCAATGTCATGCGACCTGTACG AAGTGTGACGCTTGCTAATTAACCACTTTACTTTGTGTACGGAAATGTTT TAACGCTTCACAATGCCAATTGTCGTCCCTGATTAACCTTTATTCAAAAA CTTGTTTGTTTGTTTGTAGACACCTATGACGTGGTGACAGGTAGTGGCCT GTTCTCTAACGGCCACGTGAAGTCGGACTGTCTGGACGAGTTGATCAGAG TGGTCAAACCGGGTGAGGGTTGCTTTCAAAAACTCAGACAAACACTGTAA CTACTCTTTCTTTACTACCTTTTTTTTTCAAACAAACAAGCTTTCCTGTC GACGACGACAAATTACTTCCTCTCCGATCATAGTGAATAGTTTGACACAG CAAAATTGATAAGATATAGATACAGCATTATTATGAAGTTTTATCGAATT CGTTTTTATTGTTCATAGATATTCAAGAAAAGAACACTTTGATGAAATAC ATAGAACGTGTGGTGTCTTTAAAGGAAAAACAAGAACTCGAGGCTTGTAG CGAATTTTACTTTTCTGCAACAGAATTATGTATATTGTAGTAATATAATG CATTTTGCATTTTTTTAATCCTATTTCTTTAATTTTCTTTATTTCATTCC ATTTTCTTAAAGGCGGACTGGTCTGCCTTGCTCTGAGGGAGGTTCTCCTG CGGACTTCGGAGGACTGCAAAGCCCTAGAACCCCGCATGGCGGCGCTTCA GAGCGAGGGCCGCTGGGAGCAGGTACGGCGGGACGTCTTCCCCGGTTACG TCATCGGTTTCGACGGAGTCGTGTACCTTTTTAAAGTGACGTAACGTAAC AGTTACC

Coding sequence (CDS) from alignment at Sc0000044:1365193..1370199+

>transcript:BL96946_cuf0 ID=transcript:BL96946_cuf0|Name=transcript:BL96946_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3330bp|location=Sequence derived from alignment at Sc0000044:1365193..1370199+ (Branchiostoma lanceolatum)
TTTTCGAACAAGATGGCGGCTGTGTCGAAGACTAAGGAAAGGGTCCTGGC
TGTGACTCGACCTGGAATTAAGACGGATGAGGTGATTGACTTCTACAAGA
CGTGGGCGAAGGAGTATGATCAGGATCATGTCGGCGGTGGCGCGAATTAC
ACCGGACCGCGGAAGGTTGCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAG
AAGAGACACCAGGGTTCTGGACGTGGCCGCAGGGACAGGGTTCTTAGGAG
TGGAGTTGTCTAAGTTCGGTTTCTCCAACGTGGACGCCTTAGACGCCAGT
CAGGAGATGTTGGACGTCGCCAAGACTAAGAACGTCTACAAGAACTTCCT
TAAGGAGTTCCTGGGGCCGAACCGTCTTAACATCGACGATGACACCTATG
ACGTGGTGACAGGTAGTGGCCTGTTCTCTAACGGCCACGTGAAGTCGGAC
TGTCTGGACGAGTTGATCAGAGTGGTCAAACCGGGCGGACTGGTCTGCCT
TGCTCTGAGGGAGGTTCTCCTGCGGACTTCGGAGGACTGCAAAGCCCTAG
AACCCCGCATGGCGGCGCTTCAGAGCGAGGGCCGCTGGGAGCAGGTACGG
CGGGACGTCTTCCCCGGTTACGTCATCGGTTTCGACGGAGTCGTGTACCT
TTTTAAAGTGACGTAATTTTCGAACAAGATGGCGGCTGTGTCGAAGACTA
AGGAAAGGGTCCTGGCTGTGACTCGACCTGGAATTAAGACGGATGAGGTG
ATTGACTTCTACAAGACGTGGGCGAAGGAGTATGATCAGGATCATGTCGG
CGGTGGCGCGAATTACACCGGACCGCGGAAGGTTGCCGAGGCTGTGGCGG
CGGTGCTCGGAGAGAGAAGAGACACCAGGGTTCTGGACGTGGCCGCAGGG
ACAGGGTTCTTAGGAGTGGAGTTGTCTAAGTTCGGTTTCTCCAACGTGGA
CGCCTTAGACGCCAGTCAGGAGATGTTGGACGTCGCCAAGACTAAGAACG
TCTACAAGAACTTCCTTAAGGAGTTCCTGGGGCCGAACCGTCTTAACATC
GACGATGACACCTATGACGTGGTGACAGGTAGTGGCCTGTTCTCTAACGG
CCACGTGAAGTCGGACTGTCTGGACGAGTTGATCAGAGTGGTCAAACCGG
GCGGACTGGTCTGCCTTGCTCTGAGGGAGGTTCTCCTGCGGACTTCGGAG
GACTGCAAAGCCCTAGAACCCCGCATGGCGGCGCTTCAGAGCGAGGGCCG
CTGGGAGCAGGTACGGCGGGACGTCTTCCCCGGTTACGTCATCGGTTTCG
ACGGAGTCGTGTACCTTTTTAAAGTGACGTAATTTTCGAACAAGATGGCG
GCTGTGTCGAAGACTAAGGAAAGGGTCCTGGCTGTGACTCGACCTGGAAT
TAAGACGGATGAGGTGATTGACTTCTACAAGACGTGGGCGAAGGAGTATG
ATCAGGATCATGTCGGCGGTGGCGCGAATTACACCGGACCGCGGAAGGTT
GCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAGAAGAGACACCAGGGTTCT
GGACGTGGCCGCAGGGACAGGGTTCTTAGGAGTGGAGTTGTCTAAGTTCG
GTTTCTCCAACGTGGACGCCTTAGACGCCAGTCAGGAGATGTTGGACGTC
GCCAAGACTAAGAACGTCTACAAGAACTTCCTTAAGGAGTTCCTGGGGCC
GAACCGTCTTAACATCGACGATGACACCTATGACGTGGTGACAGGTAGTG
GCCTGTTCTCTAACGGCCACGTGAAGTCGGACTGTCTGGACGAGTTGATC
AGAGTGGTCAAACCGGGCGGACTGGTCTGCCTTGCTCTGAGGGAGGTTCT
CCTGCGGACTTCGGAGGACTGCAAAGCCCTAGAACCCCGCATGGCGGCGC
TTCAGAGCGAGGGCCGCTGGGAGCAGGTACGGCGGGACGTCTTCCCCGGT
TACGTCATCGGTTTCGACGGAGTCGTGTACCTTTTTAAAGTGACGTAATT
TTCGAACAAGATGGCGGCTGTGTCGAAGACTAAGGAAAGGGTCCTGGCTG
TGACTCGACCTGGAATTAAGACGGATGAGGTGATTGACTTCTACAAGACG
TGGGCGAAGGAGTATGATCAGGATCATGTCGGCGGTGGCGCGAATTACAC
CGGACCGCGGAAGGTTGCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAGAA
GAGACACCAGGGTTCTGGACGTGGCCGCAGGGACAGGGTTCTTAGGAGTG
GAGTTGTCTAAGTTCGGTTTCTCCAACGTGGACGCCTTAGACGCCAGTCA
GGAGATGTTGGACGTCGCCAAGACTAAGAACGTCTACAAGAACTTCCTTA
AGGAGTTCCTGGGGCCGAACCGTCTTAACATCGACGATGACACCTATGAC
GTGGTGACAGGTAGTGGCCTGTTCTCTAACGGCCACGTGAAGTCGGACTG
TCTGGACGAGTTGATCAGAGTGGTCAAACCGGGCGGACTGGTCTGCCTTG
CTCTGAGGGAGGTTCTCCTGCGGACTTCGGAGGACTGCAAAGCCCTAGAA
CCCCGCATGGCGGCGCTTCAGAGCGAGGGCCGCTGGGAGCAGGTACGGCG
GGACGTCTTCCCCGGTTACGTCATCGGTTTCGACGGAGTCGTGTACCTTT
TTAAAGTGACGTAATTTTCGAACAAGATGGCGGCTGTGTCGAAGACTAAG
GAAAGGGTCCTGGCTGTGACTCGACCTGGAATTAAGACGGATGAGGTGAT
TGACTTCTACAAGACGTGGGCGAAGGAGTATGATCAGGATCATGTCGGCG
GTGGCGCGAATTACACCGGACCGCGGAAGGTTGCCGAGGCTGTGGCGGCG
GTGCTCGGAGAGAGAAGAGACACCAGGGTTCTGGACGTGGCCGCAGGGAC
AGGGTTCTTAGGAGTGGAGTTGTCTAAGTTCGGTTTCTCCAACGTGGACG
CCTTAGACGCCAGTCAGGAGATGTTGGACGTCGCCAAGACTAAGAACGTC
TACAAGAACTTCCTTAAGGAGTTCCTGGGGCCGAACCGTCTTAACATCGA
CGATGACACCTATGACGTGGTGACAGGTAGTGGCCTGTTCTCTAACGGCC
ACGTGAAGTCGGACTGTCTGGACGAGTTGATCAGAGTGGTCAAACCGGGC
GGACTGGTCTGCCTTGCTCTGAGGGAGGTTCTCCTGCGGACTTCGGAGGA
CTGCAAAGCCCTAGAACCCCGCATGGCGGCGCTTCAGAGCGAGGGCCGCT
GGGAGCAGGTACGGCGGGACGTCTTCCCCGGTTACGTCATCGGTTTCGAC
GGAGTCGTGTACCTTTTTAAAGTGACGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96946gene:BL96946Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96946_cuf0transcript:BL96946_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96946_cuf0-E1BL96946_cuf0-E1-1564476830-212584Branchiostoma lanceolatumexon
BL96946_cuf0-E2BL96946_cuf0-E2-1564476830-212586Branchiostoma lanceolatumexon
BL96946_cuf0-E3BL96946_cuf0-E3-1564476830-212588Branchiostoma lanceolatumexon
BL96946_cuf0-E4BL96946_cuf0-E4-1564476830-212590Branchiostoma lanceolatumexon
BL96946_cuf0-E5BL96946_cuf0-E5-1564476830-212593Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1365193..1370199 +
Properties
Property NameValue
Transcript idBL96946_cuf0
Biotypeprotein_coding