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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96946_cuf0 >transcript:BL96946_cuf0-protein ID=transcript:BL96946_cuf0-protein|Name=transcript:BL96946_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=221bp
FSNKMAAVSKTKERVLAVTRPGIKTDEVIDFYKTWAKEYDQDHVGGGANY
TGPRKVAEAVAAVLGERRDTRVLDVAAGTGFLGVELSKFGFSNVDALDAS
QEMLDVAKTKNVYKNFLKEFLGPNRLNIDDDTYDVVTGSGLFSNGHVKSD
CLDELIRVVKPGGLVCLALREVLLRTSEDCKALEPRMAALQSEGRWEQVR
RDVFPGYVIGFDGVVYLFKVT Run BLAST on NCBI mRNA from alignment at Sc0000044:1365193..1370199+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96946_cuf0 ID=transcript:BL96946_cuf0|Name=transcript:BL96946_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5007bp|location=Sequence derived from alignment at Sc0000044:1365193..1370199+ (Branchiostoma lanceolatum)
ATTTTCGAACAAGATGGCGGCTGTGTCGAAGACTAAGGAAAGGGTCCTGG
CTGTGACTCGACCTGGAATTAAGACGGATGAGGTGATTGACTTCTACAAG
ACGTGGGCGAAGGAGTATGATCAGGTATGGTCTCACCTGAGTGATAACGG
GGTTGAAAAGTATCCGCTTCTTTTTGTGTGTTCTTTTTACTTCATTCTGT
ACACATGAAAAGTTGGTGTCCTTGACGCCCAAATTATTGTGCGTGGCCGT
AGCCTAACGTTCTTTTAGGTCATTCTGTACACATGAAAAGTTGGTGTCCT
TGACGCCCAAATTGTTGTGCGTGGCCGTAGCCTAACGTTCTTTTAGGTCA
TTCTGTACACATGAAAAGTTGGTGTCCTTGACGCCCAAATTATTGTGTGT
GGCCGTAGCCTAAGTTACATGTAACGTAACATGACCTATTTACGTGCAGA
ACCTATTTACGTCCGGTTCGGCTCATGTCCACATGTCGCGGTGTATTATG
CCAAAGCCTGTTCTAATGAGCAATAAAGAACATCATAAGTATGATCCTTA
GCCATCTCTTTAATTTTTGCACAGCAAAACATAATGGCCATGCGTTTACC
ACGTGAACGCCACGTGCCGCGCATGTGGGGGGAATTTACAGATACGACAT
GGGTTTTTTCCATCGCGTTAAGCAAGTGGCCGGACAGACATTGTGATTTT
ACTATCATTTGTCTGCAGACTACTTTGGACAATTACTGTGCATTTTTTTC
TGGTCTATGTTCTTCAAGCATAGCGCTAGAAGGGAATAGATTCAGAAGTG
GACGATAATGGGTTACCCTAGCACAATTGTTCATCATATACCTCAGTATA
AATACATGCTCGCACGGCGTTAAACAGGCGGAGAAAAACTTACAGACCAT
GCATTTTCGTTTTAGAAGAGCTGATATTTCTGCCCATGGGTTTGAAATTT
GGCTCTGTCCGCGCGGTTTTAAGATAAATACGTTTTGAATAAATCGGACA
TTAATTGGTCATGTTACGTTAGAACCCAGCGCAGAAGAAACGCGGATCCG
CAGAAATCCTCAGAAAAGAACTTTGCAACAGAACTGAGTCAGCTTACAGA
TGTGATCTTAAATACGTGACAGAGACTGCCATTCTCGTATAGGGCTGTAT
AGCCATAGTCGATGCTAGGGCTGAAGTGAATTAGGATTTTACCATGATCG
ACGAAGGCCATATATATATATAGCACCCAGCGCATGGCATTTTTCTATGA
TTATTTGATTCTAAACCATTCACCACTGATAAAAGCTTTTCAAATTAAAA
GAAATCAACAAATTTAAAAGATTAAAGATTGAACAGTCAGAATACAGTAA
TTTCTTACCAATGTTACTCATCGTCCTTAGTAAGCCCTAAGGCGCTGTCT
CTTATTCTGGGTCACAAATGATGGCGGCGTATTCCACTTGGCTCTCCGTG
TGATCATTGCCTGTATAGCGGACGTACTGTGGAAATGAAAATTTGCACGG
TGAACTTGACCTCTGAGCATGCTAGTTTAGTTTTGGAACAAGATGGCGGC
TGAGTTGAAGGTTAAGGAAAGAGTCTCCGCGTGATTCGCCCCGGAATTAA
GACGGACGAGGTGATCATCTTTTCAATACGTGGTCTAAGGAGTTTTTCTC
TCACATGACGGTGTTTAAGACTGTACCTTTTCTTATTTTTTTTCCTACTA
ACATGATTCCATCAGGGTATATGATTCCGCCACCCTGAAAAAATACGTCC
AAACAGATCTCCAACCCAACGTCCACCAGTTTAATGCAATCCTGCATATC
TAAACTGTGCATGCCCGGGGGATGCTGCACTAGAGATCTCTCAAACCCAC
TGATTTTGAAAGTGGCAGATATATGCAACCCAGCGGATAGATACTAATAG
AGGTTTAACATAAGGCCCGATGGTCGTCTTTTGAGTATAATTTTTTCACA
ATCATTGGAATATGATTGCTTCCCTGTTTTCACCATTTACCGCTGATGGA
AGCTTTTCAAAGAAAAAGGTCAACAAATGATTGAACACTCAGAATGCAGC
CACTTACTTGCTAATGTCATCTTGTCCCTGATGAGACATAAAGTGTTGGT
TTTTTAATGGGTTAGGAAAGTGTACGCCTATACGCAGTCGGCAAACAAAT
CGAGTTTAGATATTATGCTTTTTGATGATCACTCTCTACATTTGGAAAGT
CAAATACAAATAGATATACAACGTGCTCAGATTTTATCGAATTAGAACGT
TATATGTAAGTGGTGCTAATGTTCACGAGATCATGCATATAATATCCCAA
AAATGCAAATTAGATTGGTAAACAAACGAGTTTGGATATTGTACTATTTC
ATTCACCGCACACAGAGTCCCAAAAATATGGATTGGCGCCATGTCATTTG
TGCAAACTAGTAACGAGAAAATGCAAATTTGATGTAATTGATAAACAAAT
CGAGTTTTGATACTGTAATTCTTGTTTCAGTTTTGTACTTTTGACGATAA
CTCACTGCATATGGAAAGTCCCCAAAATATGTGTATACAGATTTCATTGA
ATTAGGACCATGCCAGTGGTACAAATTGGTAACGGGAGCAGGTAAAAGTC
CTAAATATGCAAATTGATGTGAATGCCTAACAAATCGAGTTTAGATATTG
TAATTTTGATAAACACTCGGTCCATATGGAATGTCCCAAAGAACGTGGAT
AGATGTATGCATATTTCATTAAGTTACGACCATGTCAGTCGTTCAAAACT
GCTTACGAGCGCATGTGAAATGTCCAAAATATGCAAATTAATGGTCAAAC
AAATCGAGTTTGGATATTGTACTTTTTGATGATCACTCGCTTCATATGCA
ATATCCCAAAAAATAGATGTATGCAAATCTCATTGAATTAGCTCCATAGG
ACCATGTCAGTGGTGCAAACTGGTTACGAGAGCTTGCGAAATGTCCTTAA
TATGCAAATTAGATGTAATTGCAAAACAAATCGAGTTTGGATACCAGTAT
TGTTCTCTTTGATGATCACTCACTGCATATTAAATGTTCCCAAAAAACAG
ATGAATGCAAATGAACTAGGACCATGTCAGTGGTGAAACCTGGTTACGAG
AGCATCCAAACTGTCCCAAAAAATGCAAATTAGATGTATGAAATATCGTT
TACATGATGCAGGATCATGTCGGCGGTGGCGCGAATTACACCGGACCGCG
GAAGGTTGCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAGAAGAGACACCA
GGGTTCTGGACGTGGCCGCAGGGACAGGGTTCTTAGGAGTGGAGGTAGGG
ATGAAATACTAGTATGTTCTATTTCATGTTTTTAGGCAACTAAATAACTA
TATAAGCGCGGGGTGGTCCTGATGTTCAAGGATAAGGATCATGACAATTT
TTTTTATATTTCGGGTCGGTGCAATTGTTTTATAATTATTCTATAATAAT
TCTATAATATTTTCGGTTTTTTTAAATTCTGTATTCATGTCTACAAATGT
GCAAAATATGTATGGATCGATATTTGCTTTCAGATCTGCATTTTCTTAAT
TATGCATTTCATTTTTCCTAAAATTTTGTGACCAAGCCCTCTCTTGTTCT
ACCGAAATTAGGACATAACCTTTTCGACTTTACTTTTGGGAGCGCATTTC
TTAACAGCGACACCTGTGCTGCAGTGCAAAGTAAACCAGTCAGAATTACC
CTGAGGAAGGTGTCAGATGGTCACCTAAACAATTGGTTGTGAACAAAGAG
TTTTTTATTCATTGTTTTTCGACTTTTTCCAGTTGTCTAAGTTCGGTTTC
TCCAACGTGGACGCCTTAGACGCCAGTCAGGAGATGTTGGACGTCGCCAA
GACTAAGAACGTCTACAAGAACTTCCTTAAGGAGTTCCTGGGGCCGAACC
GTCTTAACATCGACGATGGTGAGAATCGAAACATTCTAGACTTATGGAAA
AACATTAGATATAGTTCTCTTGAACATACAGAGGGATGTAATTCATCACT
GTTATAAGAAAAACGGAAAGAAAAAGTTGTTGTGAGCTAAATGGAAAAGC
TTTAATAACGTTGATTTTTTAGTAATGGATTTGAGATTGTTGATTTGTTA
AGTGTTTGTTTTTGTAAAGATTGCAATTTCCGTACACAAAGTAAAGTTCC
ATCAGTCTCAAGTTGGAATGACCCAAAGCCAATGTCATGCGACCTGTACG
AAGTGTGACGCTTGCTAATTAACCACTTTACTTTGTGTACGGAAATGTTT
TAACGCTTCACAATGCCAATTGTCGTCCCTGATTAACCTTTATTCAAAAA
CTTGTTTGTTTGTTTGTAGACACCTATGACGTGGTGACAGGTAGTGGCCT
GTTCTCTAACGGCCACGTGAAGTCGGACTGTCTGGACGAGTTGATCAGAG
TGGTCAAACCGGGTGAGGGTTGCTTTCAAAAACTCAGACAAACACTGTAA
CTACTCTTTCTTTACTACCTTTTTTTTTCAAACAAACAAGCTTTCCTGTC
GACGACGACAAATTACTTCCTCTCCGATCATAGTGAATAGTTTGACACAG
CAAAATTGATAAGATATAGATACAGCATTATTATGAAGTTTTATCGAATT
CGTTTTTATTGTTCATAGATATTCAAGAAAAGAACACTTTGATGAAATAC
ATAGAACGTGTGGTGTCTTTAAAGGAAAAACAAGAACTCGAGGCTTGTAG
CGAATTTTACTTTTCTGCAACAGAATTATGTATATTGTAGTAATATAATG
CATTTTGCATTTTTTTAATCCTATTTCTTTAATTTTCTTTATTTCATTCC
ATTTTCTTAAAGGCGGACTGGTCTGCCTTGCTCTGAGGGAGGTTCTCCTG
CGGACTTCGGAGGACTGCAAAGCCCTAGAACCCCGCATGGCGGCGCTTCA
GAGCGAGGGCCGCTGGGAGCAGGTACGGCGGGACGTCTTCCCCGGTTACG
TCATCGGTTTCGACGGAGTCGTGTACCTTTTTAAAGTGACGTAACGTAAC
AGTTACC Coding sequence (CDS) from alignment at Sc0000044:1365193..1370199+ >transcript:BL96946_cuf0 ID=transcript:BL96946_cuf0|Name=transcript:BL96946_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3330bp|location=Sequence derived from alignment at Sc0000044:1365193..1370199+ (Branchiostoma lanceolatum)
TTTTCGAACAAGATGGCGGCTGTGTCGAAGACTAAGGAAAGGGTCCTGGC
TGTGACTCGACCTGGAATTAAGACGGATGAGGTGATTGACTTCTACAAGA
CGTGGGCGAAGGAGTATGATCAGGATCATGTCGGCGGTGGCGCGAATTAC
ACCGGACCGCGGAAGGTTGCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAG
AAGAGACACCAGGGTTCTGGACGTGGCCGCAGGGACAGGGTTCTTAGGAG
TGGAGTTGTCTAAGTTCGGTTTCTCCAACGTGGACGCCTTAGACGCCAGT
CAGGAGATGTTGGACGTCGCCAAGACTAAGAACGTCTACAAGAACTTCCT
TAAGGAGTTCCTGGGGCCGAACCGTCTTAACATCGACGATGACACCTATG
ACGTGGTGACAGGTAGTGGCCTGTTCTCTAACGGCCACGTGAAGTCGGAC
TGTCTGGACGAGTTGATCAGAGTGGTCAAACCGGGCGGACTGGTCTGCCT
TGCTCTGAGGGAGGTTCTCCTGCGGACTTCGGAGGACTGCAAAGCCCTAG
AACCCCGCATGGCGGCGCTTCAGAGCGAGGGCCGCTGGGAGCAGGTACGG
CGGGACGTCTTCCCCGGTTACGTCATCGGTTTCGACGGAGTCGTGTACCT
TTTTAAAGTGACGTAATTTTCGAACAAGATGGCGGCTGTGTCGAAGACTA
AGGAAAGGGTCCTGGCTGTGACTCGACCTGGAATTAAGACGGATGAGGTG
ATTGACTTCTACAAGACGTGGGCGAAGGAGTATGATCAGGATCATGTCGG
CGGTGGCGCGAATTACACCGGACCGCGGAAGGTTGCCGAGGCTGTGGCGG
CGGTGCTCGGAGAGAGAAGAGACACCAGGGTTCTGGACGTGGCCGCAGGG
ACAGGGTTCTTAGGAGTGGAGTTGTCTAAGTTCGGTTTCTCCAACGTGGA
CGCCTTAGACGCCAGTCAGGAGATGTTGGACGTCGCCAAGACTAAGAACG
TCTACAAGAACTTCCTTAAGGAGTTCCTGGGGCCGAACCGTCTTAACATC
GACGATGACACCTATGACGTGGTGACAGGTAGTGGCCTGTTCTCTAACGG
CCACGTGAAGTCGGACTGTCTGGACGAGTTGATCAGAGTGGTCAAACCGG
GCGGACTGGTCTGCCTTGCTCTGAGGGAGGTTCTCCTGCGGACTTCGGAG
GACTGCAAAGCCCTAGAACCCCGCATGGCGGCGCTTCAGAGCGAGGGCCG
CTGGGAGCAGGTACGGCGGGACGTCTTCCCCGGTTACGTCATCGGTTTCG
ACGGAGTCGTGTACCTTTTTAAAGTGACGTAATTTTCGAACAAGATGGCG
GCTGTGTCGAAGACTAAGGAAAGGGTCCTGGCTGTGACTCGACCTGGAAT
TAAGACGGATGAGGTGATTGACTTCTACAAGACGTGGGCGAAGGAGTATG
ATCAGGATCATGTCGGCGGTGGCGCGAATTACACCGGACCGCGGAAGGTT
GCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAGAAGAGACACCAGGGTTCT
GGACGTGGCCGCAGGGACAGGGTTCTTAGGAGTGGAGTTGTCTAAGTTCG
GTTTCTCCAACGTGGACGCCTTAGACGCCAGTCAGGAGATGTTGGACGTC
GCCAAGACTAAGAACGTCTACAAGAACTTCCTTAAGGAGTTCCTGGGGCC
GAACCGTCTTAACATCGACGATGACACCTATGACGTGGTGACAGGTAGTG
GCCTGTTCTCTAACGGCCACGTGAAGTCGGACTGTCTGGACGAGTTGATC
AGAGTGGTCAAACCGGGCGGACTGGTCTGCCTTGCTCTGAGGGAGGTTCT
CCTGCGGACTTCGGAGGACTGCAAAGCCCTAGAACCCCGCATGGCGGCGC
TTCAGAGCGAGGGCCGCTGGGAGCAGGTACGGCGGGACGTCTTCCCCGGT
TACGTCATCGGTTTCGACGGAGTCGTGTACCTTTTTAAAGTGACGTAATT
TTCGAACAAGATGGCGGCTGTGTCGAAGACTAAGGAAAGGGTCCTGGCTG
TGACTCGACCTGGAATTAAGACGGATGAGGTGATTGACTTCTACAAGACG
TGGGCGAAGGAGTATGATCAGGATCATGTCGGCGGTGGCGCGAATTACAC
CGGACCGCGGAAGGTTGCCGAGGCTGTGGCGGCGGTGCTCGGAGAGAGAA
GAGACACCAGGGTTCTGGACGTGGCCGCAGGGACAGGGTTCTTAGGAGTG
GAGTTGTCTAAGTTCGGTTTCTCCAACGTGGACGCCTTAGACGCCAGTCA
GGAGATGTTGGACGTCGCCAAGACTAAGAACGTCTACAAGAACTTCCTTA
AGGAGTTCCTGGGGCCGAACCGTCTTAACATCGACGATGACACCTATGAC
GTGGTGACAGGTAGTGGCCTGTTCTCTAACGGCCACGTGAAGTCGGACTG
TCTGGACGAGTTGATCAGAGTGGTCAAACCGGGCGGACTGGTCTGCCTTG
CTCTGAGGGAGGTTCTCCTGCGGACTTCGGAGGACTGCAAAGCCCTAGAA
CCCCGCATGGCGGCGCTTCAGAGCGAGGGCCGCTGGGAGCAGGTACGGCG
GGACGTCTTCCCCGGTTACGTCATCGGTTTCGACGGAGTCGTGTACCTTT
TTAAAGTGACGTAATTTTCGAACAAGATGGCGGCTGTGTCGAAGACTAAG
GAAAGGGTCCTGGCTGTGACTCGACCTGGAATTAAGACGGATGAGGTGAT
TGACTTCTACAAGACGTGGGCGAAGGAGTATGATCAGGATCATGTCGGCG
GTGGCGCGAATTACACCGGACCGCGGAAGGTTGCCGAGGCTGTGGCGGCG
GTGCTCGGAGAGAGAAGAGACACCAGGGTTCTGGACGTGGCCGCAGGGAC
AGGGTTCTTAGGAGTGGAGTTGTCTAAGTTCGGTTTCTCCAACGTGGACG
CCTTAGACGCCAGTCAGGAGATGTTGGACGTCGCCAAGACTAAGAACGTC
TACAAGAACTTCCTTAAGGAGTTCCTGGGGCCGAACCGTCTTAACATCGA
CGATGACACCTATGACGTGGTGACAGGTAGTGGCCTGTTCTCTAACGGCC
ACGTGAAGTCGGACTGTCTGGACGAGTTGATCAGAGTGGTCAAACCGGGC
GGACTGGTCTGCCTTGCTCTGAGGGAGGTTCTCCTGCGGACTTCGGAGGA
CTGCAAAGCCCTAGAACCCCGCATGGCGGCGCTTCAGAGCGAGGGCCGCT
GGGAGCAGGTACGGCGGGACGTCTTCCCCGGTTACGTCATCGGTTTCGAC
GGAGTCGTGTACCTTTTTAAAGTGACGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:1365193..1370199 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96946_cuf0 |
| Biotype | protein_coding |
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