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transcript:BL96945_cuf17 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96945_cuf17
Unique Nametranscript:BL96945_cuf17
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96945_cuf17

>transcript:BL96945_cuf17-protein ID=transcript:BL96945_cuf17-protein|Name=transcript:BL96945_cuf17|organism=Branchiostoma lanceolatum|type=polypeptide|length=173bp
STVIDFTALGSLKEVLPEALCQNAADVINSWLTSTTPKPTTKPTTTSRPD
DPPVAEAGVDQTVQSTQTAVMLDGSGSHDDHGIVSWLWQYPDQNLPLSLG
DTTSPTMAVSGLVPGEYTFTLTVTDASGQQDTDDVTIVVTKPTTPAPTTT
KGTTTPTAPLDHPPVAFAGADEI
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1015725..1018362+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96945_cuf17 ID=transcript:BL96945_cuf17|Name=transcript:BL96945_cuf17|organism=Branchiostoma lanceolatum|type=mRNA|length=2638bp|location=Sequence derived from alignment at Sc0000044:1015725..1018362+ (Branchiostoma lanceolatum)
CTCGACTGTCATCGATTTCACAGCACTGGGGTCGCTCAAGGAGGTTCTAC CAGAGGCACTGTGTCAGAGTACGTAATATTGCTTTAACCTTCTGTGTTAA GATTATGGGTTAAGTAGCAAGGGAATGGTTAAGGTATAACTGCAGTAAGT CGCCAGCAGTCCTGTCTACGCCTCGACTGTCATCGACTTAATTCATTTCA CAGCGCTAGGATCGCTTAAGAAGGTCCTAGCGGAGACGCTGTGCCAGAGT ACGTAGTATAATATCTAACCTTAAGCATGCAAAAGTCTTTGTTTAGTCAG ATACAATTTTGCATACGTGTAGAGATAGATAGATAGATAGATAGATAAAT AAATAGATCGATCGATAGATAGATAGATGATTTTTACGACAAAGACACCT TGACAATTCATTCTACATATTACTTCATTGCCGCCTGTATTGATAGTCCT ATGCCCATGCACTTCCCTACAGATGCTGCTGACGTCATCAACAGCTGGCT GACGTCAACCACCCCCAAACCAACCACGAAACCGACCACCACATCCAGGC CAGGTAGATAAAAAACGACGTTGAATTTTCTGTACCCTAGTCCAATTTAC TAGCAGTAGGACTTGGTAGATAAGCTGCATACCTGGTGGCGCTGTGGCAA GATGAAGAGCCGGTTTTACGTCAAAAACTGTACCATTTATAATATGCAAG GTTACGATTTAATATACAATTGATACAATATGCATGGTGGGATTTGATGT CACACAAATAATGTGTAAGGATGATCAAACGAAAACATCGGGGCTGAGTA ACAATGTGTGATAGCAGCTAAAAAATTGAAAAGATTGCCACACACATTTC ACAAATTCCTTTTCTATACTTGACATGGCTTTGCACCATTTTTGACAAAG TTGTCTTTTTTCTAGGTATTCAAATTATATATCTTCAGACAGCCCTTTGT AGGTTGAGATTGAATCACGTACTGATTTTTGTTGAATAATTTCACGGGAA GTTGCTGAAAGGTTGGAATGTATAACATGTTATTTTTTCCGTATCTCCAG ACGACCCCCCTGTCGCTGAAGCTGGCGTGGACCAGACCGTGCAGAGCACC CAGACGGCCGTGATGCTGGACGGGTCCGGTAGTCATGACGACCACGGCAT CGTCTCCTGGCTCTGGCAGTACCCCGACCAGAACCTGCCTCTCAGTCTGG GGGTAAGGCATGATATAACTCACTGTTATTCTGCTGGTAAACTGTTAGTT AATAGCTATAGGTATCAATGTTATCAATTGTGCCATGTGTTGATGACGAC AACAGTTTCGTCCCCTGGCTATTGCAGTATCCTGACCAGAACCTACTTCT TAGTCTTAGGATGAAAATCACGGCGTTTTAGAATATCCACACATATGATT ATCCTTTTCATATAAACCAAATTGCTATAATTCTAAAGAGTTCGGAAACT TCCGATTCACTCTGCATCCTACCTGCTCTGCTCAGCTTGCCATTTTGACC CGAAGATGGATAGGTCACTTTTGATCATGTAAAATCATAAATTTCCATGT ATTTTAACCATGATATATGTTGATTTAAGTAGACGTTAGTTATACTCGTA ACTTTGATGTCAAGATCAGTTGGGAAAGCGAACTGAGGAACAAGTGCGTA ATCATATTGTTTTTCAGTCAGTCTAGTAAAAATTCTACTAAAATTTAAAG ATTAAGACCTTTTAACTGCGCAGGATACAAGTTCAGATTCAAATCAAAAT GACTTTATCTAAACTGTACGTTCCATCACTTCCCAGGATACGACCTCCCC GACCATGGCCGTGAGCGGGCTGGTTCCCGGAGAGTACACCTTCACCTTGA CCGTGACCGACGCGTCAGGACAGCAGGACACTGATGACGTCACTATCGTG GTGACCAAACCGACCACACCTGCCCCGACAACCACCAAGGGAACCACAAC ACCCACTGCGCGTAAGGGGGAAATACATTTTCATTTGTAGATTCATTGTG AGAAGGCATGTTCTGATCTCTATGTAGGGTTTTCGTGCCCCCAATTGACC AGAGCTCAGCTTATAGTCTGACATCTTCAACAGGTCTCTGTCCACCTGTT ACTAAGCTTGCTTTTTGGGTGCCTTTTCAGTGATATCGTGTTACAATGAA TTGGGGGATAATCACGGATTTCGGGATCTTTTGTTGTAACGATGAGTCTT TTCTTCATTTGCCTTTCTTCGTATTGTGAGAGTATCTAAATATATTGAGA TCTGGTACTCTCTTTGCCTTTAGTTAACAGCCTAAACCCACTGACAGGTT TTTTTAGAAGAGTAACAATATGCCTTTCTGATCGTCCCCAGCTTTAGAAC ACCCCCCTGTGGCGTTTGCCAGCGCTGACTAAGCGTTAATCTGTTCTAAT AGTCTAACAGTTATGACAGATACATGTAGCTTTACCTTAGTAACAACGTG CCTTTCTGATCGTCCCCAGCCGTGGACCACCCTCCCGTGGCGTTTGCCGG CACTGACGAGATCGTTCACCTACCCTTAGAGCCTAAACATACCGACATAC ATCTTAACAAGAGTAACAAAACGCGTTTCTGGTTTTCCGCAGCCCTAGAC CACCCTCCTGTGGCGTTTGCCGGCGCGGACGAGATCGT

Coding sequence (CDS) from alignment at Sc0000044:1015725..1018362+

>transcript:BL96945_cuf17 ID=transcript:BL96945_cuf17|Name=transcript:BL96945_cuf17|organism=Branchiostoma lanceolatum|type=CDS|length=2595bp|location=Sequence derived from alignment at Sc0000044:1015725..1018362+ (Branchiostoma lanceolatum)
TCGACTGTCATCGATTTCACAGCACTGGGGTCGCTCAAGGAGGTTCTACC
AGAGGCACTGTGTCAGAATGCTGCTGACGTCATCAACAGCTGGCTGACGT
CAACCACCCCCAAACCAACCACGAAACCGACCACCACATCCAGGCCAGAC
GACCCCCCTGTCGCTGAAGCTGGCGTGGACCAGACCGTGCAGAGCACCCA
GACGGCCGTGATGCTGGACGGGTCCGGTAGTCATGACGACCACGGCATCG
TCTCCTGGCTCTGGCAGTACCCCGACCAGAACCTGCCTCTCAGTCTGGGG
GATACGACCTCCCCGACCATGGCCGTGAGCGGGCTGGTTCCCGGAGAGTA
CACCTTCACCTTGACCGTGACCGACGCGTCAGGACAGCAGGACACTGATG
ACGTCACTATCGTGGTGACCAAACCGACCACACCTGCCCCGACAACCACC
AAGGGAACCACAACACCCACTGCGCCCCTAGACCACCCTCCTGTGGCGTT
TGCCGGCGCGGACGAGATCTCGACTGTCATCGATTTCACAGCACTGGGGT
CGCTCAAGGAGGTTCTACCAGAGGCACTGTGTCAGAATGCTGCTGACGTC
ATCAACAGCTGGCTGACGTCAACCACCCCCAAACCAACCACGAAACCGAC
CACCACATCCAGGCCAGACGACCCCCCTGTCGCTGAAGCTGGCGTGGACC
AGACCGTGCAGAGCACCCAGACGGCCGTGATGCTGGACGGGTCCGGTAGT
CATGACGACCACGGCATCGTCTCCTGGCTCTGGCAGTACCCCGACCAGAA
CCTGCCTCTCAGTCTGGGGGATACGACCTCCCCGACCATGGCCGTGAGCG
GGCTGGTTCCCGGAGAGTACACCTTCACCTTGACCGTGACCGACGCGTCA
GGACAGCAGGACACTGATGACGTCACTATCGTGGTGACCAAACCGACCAC
ACCTGCCCCGACAACCACCAAGGGAACCACAACACCCACTGCGCCCCTAG
ACCACCCTCCTGTGGCGTTTGCCGGCGCGGACGAGATCTCGACTGTCATC
GATTTCACAGCACTGGGGTCGCTCAAGGAGGTTCTACCAGAGGCACTGTG
TCAGAATGCTGCTGACGTCATCAACAGCTGGCTGACGTCAACCACCCCCA
AACCAACCACGAAACCGACCACCACATCCAGGCCAGACGACCCCCCTGTC
GCTGAAGCTGGCGTGGACCAGACCGTGCAGAGCACCCAGACGGCCGTGAT
GCTGGACGGGTCCGGTAGTCATGACGACCACGGCATCGTCTCCTGGCTCT
GGCAGTACCCCGACCAGAACCTGCCTCTCAGTCTGGGGGATACGACCTCC
CCGACCATGGCCGTGAGCGGGCTGGTTCCCGGAGAGTACACCTTCACCTT
GACCGTGACCGACGCGTCAGGACAGCAGGACACTGATGACGTCACTATCG
TGGTGACCAAACCGACCACACCTGCCCCGACAACCACCAAGGGAACCACA
ACACCCACTGCGCCCCTAGACCACCCTCCTGTGGCGTTTGCCGGCGCGGA
CGAGATCTCGACTGTCATCGATTTCACAGCACTGGGGTCGCTCAAGGAGG
TTCTACCAGAGGCACTGTGTCAGAATGCTGCTGACGTCATCAACAGCTGG
CTGACGTCAACCACCCCCAAACCAACCACGAAACCGACCACCACATCCAG
GCCAGACGACCCCCCTGTCGCTGAAGCTGGCGTGGACCAGACCGTGCAGA
GCACCCAGACGGCCGTGATGCTGGACGGGTCCGGTAGTCATGACGACCAC
GGCATCGTCTCCTGGCTCTGGCAGTACCCCGACCAGAACCTGCCTCTCAG
TCTGGGGGATACGACCTCCCCGACCATGGCCGTGAGCGGGCTGGTTCCCG
GAGAGTACACCTTCACCTTGACCGTGACCGACGCGTCAGGACAGCAGGAC
ACTGATGACGTCACTATCGTGGTGACCAAACCGACCACACCTGCCCCGAC
AACCACCAAGGGAACCACAACACCCACTGCGCCCCTAGACCACCCTCCTG
TGGCGTTTGCCGGCGCGGACGAGATCTCGACTGTCATCGATTTCACAGCA
CTGGGGTCGCTCAAGGAGGTTCTACCAGAGGCACTGTGTCAGAATGCTGC
TGACGTCATCAACAGCTGGCTGACGTCAACCACCCCCAAACCAACCACGA
AACCGACCACCACATCCAGGCCAGACGACCCCCCTGTCGCTGAAGCTGGC
GTGGACCAGACCGTGCAGAGCACCCAGACGGCCGTGATGCTGGACGGGTC
CGGTAGTCATGACGACCACGGCATCGTCTCCTGGCTCTGGCAGTACCCCG
ACCAGAACCTGCCTCTCAGTCTGGGGGATACGACCTCCCCGACCATGGCC
GTGAGCGGGCTGGTTCCCGGAGAGTACACCTTCACCTTGACCGTGACCGA
CGCGTCAGGACAGCAGGACACTGATGACGTCACTATCGTGGTGACCAAAC
CGACCACACCTGCCCCGACAACCACCAAGGGAACCACAACACCCACTGCG
CCCCTAGACCACCCTCCTGTGGCGTTTGCCGGCGCGGACGAGATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96945gene:BL96945Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96945_cuf17transcript:BL96945_cuf17-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96945_cuf17-E1BL96945_cuf17-E1-1564476830-212187Branchiostoma lanceolatumexon
BL96945_cuf17-E2BL96945_cuf17-E2-1564476830-212189Branchiostoma lanceolatumexon
BL96945_cuf17-E3BL96945_cuf17-E3-1564476830-212191Branchiostoma lanceolatumexon
BL96945_cuf17-E4BL96945_cuf17-E4-1564476830-212193Branchiostoma lanceolatumexon
BL96945_cuf17-E5BL96945_cuf17-E5-1564476830-212196Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1015725..1018362 +
Properties
Property NameValue
Transcript idBL96945_cuf17
Biotypeprotein_coding