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transcript:BL96940_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96940_cuf0
Unique Nametranscript:BL96940_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96940_cuf0

>transcript:BL96940_cuf0-protein ID=transcript:BL96940_cuf0-protein|Name=transcript:BL96940_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
CLGGLASVTQQGNNIVIDTILCVTVTYDGSHRVTVELPPHLASTVGGLCG
NANGIQGDDLVKPDQTPAADPVDFGNSWVAHDDVSCPAVLASQQFDISQA
DQAFVQELESQQFCGHLQDTN
Run BLAST on NCBI

mRNA from alignment at Sc0000044:960722..962112+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96940_cuf0 ID=transcript:BL96940_cuf0|Name=transcript:BL96940_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1391bp|location=Sequence derived from alignment at Sc0000044:960722..962112+ (Branchiostoma lanceolatum)
TCTGCCTGGGCGGCCTGGCGTCCGTCACGCAACAGGGGAACAACATCGTC ATCGACACCATCCTCTGCGTCACTGTGACTTACGACGGCAGCCACCGGTA CGTGGCGTCATTTCTGATCGACACAATTTGTACTGACCGTTTTACTGTGT GTATATGCGTTGTACATGTCGTGTATCTTAAAATGATGAAGAGCTGACAT GCGAATGACTGTGTTATATCGTTTTGTCTGTCAGCAAGCTTTTATACAGT ATAGGTATAAATGTATGAAAATCTTTATTGTGTATTCATGCATAAAGGGC TGGATACACGGATGACCATGAGGTCTGATGAATGTACAACATGAGAAAAA ACACCAAGAATAATGTAACCTCATTTGTTGCAAAATGGTAAAAATCTAAG TGCCTTTCGTACTTTTTCTCCTTGCTGTAGTTCATAGACGTTTTCGTACA TATATTTCTAGTGTTACAGTGGAGCTTCCCCCTCACCTTGCCTCGACGGT TGGTGGTCTCTGTGGCAACGCGAACGGTATCCAAGGAGACGACCTGGTCA AACCTGACCAGACCCCGGCCGCTGACCCCGTGGACTTCGGCAACAGCTGG GTGGCTCATGATGACGTCAGGTCGGTACTTCTGGTCTTATTTCTAAATTG ATAAGAAGCCGCATTGCACTACTAGCTAATGATAAGAAAGCGTCATGCTT TGTCCTCAGTCTGAAGTTCGACCGCTTTATCTTTTTTGCATCATCACCGT TCACAGCTTACCATAATTGCTTGACATGAAAATACAGGTATGTATGAAGT ATCAATAACGATCTGCAATCTAGAAAATACAACAAGTCCATCTGAGATTT TTCTACGTTGTTTTTTTAGGGCAAGGCAGTTCACATAGTAATTTTAGCAG CAATGGGAGGTCACATATATATTTTGCAAGATGAATAACTTTTCAAAGTA CACATCATGCTTCAAATGACTAACAGATATAAAATGCAGATGACCAGAAT CGACTCGTAACAGAACCCATTGGATCTGACTTGGAAATCCATTCAATTTA TAATTGGAATGTTTGCTAAACAAGAAAAATGAAATAAGCAATCTGTAATT GCATGCGATGAGTGAAAAGCATGGCCTTTCATGCTACAAACTCTCTTTCT GTTTCCAGCTGCCCAGCCGTGCCTGCTTCCCAGCAGGTTGACATCGCCAA GGCTGATCAGGCGTGTATCTAATGTTTGTATATCATGAATTTCCTGGTAC AGTTACAAATCTATCTCGACTCCTATTTCCAGCTGCCCCGCCGTGCTTGC TTCCCAGCAGTTCGACATCTCCCAGGCTGACCAGGCTTTTGTTCAGGAGC TAGAGAGCCAGCAGTTCTGCGGACATCTACAGGACACCAAC

Coding sequence (CDS) from alignment at Sc0000044:960722..962112+

>transcript:BL96940_cuf0 ID=transcript:BL96940_cuf0|Name=transcript:BL96940_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1089bp|location=Sequence derived from alignment at Sc0000044:960722..962112+ (Branchiostoma lanceolatum)
TGCCTGGGCGGCCTGGCGTCCGTCACGCAACAGGGGAACAACATCGTCAT
CGACACCATCCTCTGCGTCACTGTGACTTACGACGGCAGCCACCGTGTTA
CAGTGGAGCTTCCCCCTCACCTTGCCTCGACGGTTGGTGGTCTCTGTGGC
AACGCGAACGGTATCCAAGGAGACGACCTGGTCAAACCTGACCAGACCCC
GGCCGCTGACCCCGTGGACTTCGGCAACAGCTGGGTGGCTCATGATGACG
TCAGCTGCCCCGCCGTGCTTGCTTCCCAGCAGTTCGACATCTCCCAGGCT
GACCAGGCTTTTGTTCAGGAGCTAGAGAGCCAGCAGTTCTGCGGACATCT
ACAGGACACCAACTGCCTGGGCGGCCTGGCGTCCGTCACGCAACAGGGGA
ACAACATCGTCATCGACACCATCCTCTGCGTCACTGTGACTTACGACGGC
AGCCACCGTGTTACAGTGGAGCTTCCCCCTCACCTTGCCTCGACGGTTGG
TGGTCTCTGTGGCAACGCGAACGGTATCCAAGGAGACGACCTGGTCAAAC
CTGACCAGACCCCGGCCGCTGACCCCGTGGACTTCGGCAACAGCTGGGTG
GCTCATGATGACGTCAGCTGCCCCGCCGTGCTTGCTTCCCAGCAGTTCGA
CATCTCCCAGGCTGACCAGGCTTTTGTTCAGGAGCTAGAGAGCCAGCAGT
TCTGCGGACATCTACAGGACACCAACTGCCTGGGCGGCCTGGCGTCCGTC
ACGCAACAGGGGAACAACATCGTCATCGACACCATCCTCTGCGTCACTGT
GACTTACGACGGCAGCCACCGTGTTACAGTGGAGCTTCCCCCTCACCTTG
CCTCGACGGTTGGTGGTCTCTGTGGCAACGCGAACGGTATCCAAGGAGAC
GACCTGGTCAAACCTGACCAGACCCCGGCCGCTGACCCCGTGGACTTCGG
CAACAGCTGGGTGGCTCATGATGACGTCAGCTGCCCCGCCGTGCTTGCTT
CCCAGCAGTTCGACATCTCCCAGGCTGACCAGGCTTTTGTTCAGGAGCTA
GAGAGCCAGCAGTTCTGCGGACATCTACAGGACACCAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96940gene:BL96940Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96940_cuf0-E1BL96940_cuf0-E1-1564476830-212099Branchiostoma lanceolatumexon
BL96940_cuf0-E2BL96940_cuf0-E2-1564476830-212101Branchiostoma lanceolatumexon
BL96940_cuf0-E3BL96940_cuf0-E3-1564476830-212103Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96940_cuf0transcript:BL96940_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:960722..962112 +
Properties
Property NameValue
Transcript idBL96940_cuf0
Biotypeprotein_coding