transcript:BL96938_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96938_cuf4
Unique Nametranscript:BL96938_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96938_cuf4

>transcript:BL96938_cuf4-protein ID=transcript:BL96938_cuf4-protein|Name=transcript:BL96938_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=262bp
KNSISLSPPAPLAGEGSCGTPAIPPSLTRVVGGTVSVPGSWPWQISLRYR
GSHTCGGTLIHPDWVLTAAHCVDGRASPEPWTILLGKEHRNAEDPTQQTR
SVTKVIVHESWNSNTVQNDLTLMKLSSPVVLTDQVSPACLPESDTPAGTE
CYTTGWGSTGSGLSEVLLQGKVPIVAPSTCVSYLGASSIDTNTMICAGYD
QGGVDACQGDSGGPLVCQRADGTWELAGVVSWGIGCAQARKPGVYTRVFN
YVDWIGYKMETN
Run BLAST on NCBI

mRNA from alignment at Sc0000307:276858..279598-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96938_cuf4 ID=transcript:BL96938_cuf4|Name=transcript:BL96938_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2741bp|location=Sequence derived from alignment at Sc0000307:276858..279598- (Branchiostoma lanceolatum)
GAAAAATTCGATCTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGAAGGTT CGTGCGGCACCCCCGCCATCCCGCCGTCTCTGACGCGCGTGGTGGGCGGG ACCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGCTACCG CGGCTCGCACACGTGCGGCGGCACTCTCATCCACCCGGACTGGGTCCTCA CCGCCGCGCACTGCGTGGACGGGTACGAACAGTTATTCCGGTTTGGCGAG TAATGTAAAGACACGTTCGATTACTTTGTAGCATTGTATGTTTCGTCCGT AAGTATCTCTGCTAAAGAAGGCAAGTAATTAGCTCGCCCCTTAGGCGTCG CCAAAAACGACTTTTCTACTCTGTGATCGCAGAGGTACCCGCAGGCTAAA TGGCACGGATAGGCATGCATATTGAATTTGCAGGTTTGACGTGTCATCGT GATCAATGTTTTCTGATACTTGACATGAAGTAAACTTACTTCCGTCTTGT TCGGTGCACAAAACAGCTCTTTATAATGGGGTTTTTCTTTCCCCACACCC CAGGAGAGCAAGCCCCGAGCCATGGACCATCCTCCTCGGGAAAGAACACC GCAACGCAGAGGACCCCACACAGCAGACCCGCAGTGTGACAAAGGTCATC GTGCACGAGGTAAACGCCCAAAACGTCATAGTGAAAGACTACCTGCTACA TGTATGTTTGAGCTACAGTATGTGACTTTTGGCCTTTTTTGTCCATTGCC CTTCATCTATGATTGATCCAACATCATCCCTGGAAACTGAAGGGACTGTG AAAATTCCTGAGAACAGAGCAGTCCGACACAAGCTGAAATCACATTTAGT GAAAACATGGAACAACTGAATTTTTAGCCTGACATTCAAGCCTTCTGTAG TTGCCGAGATCTATTTGCAAAGAGGCCGAAGACGACCAAGACTCGACAGC TATAGTAGGTTTGGATACCAGGTCACTGAATNGACAGCTATAGTAGGTTC GGATACCAGGCCACTGAATTGTATGGTTGCGGACAAGCACGAAGGTCTAT TAACAAGCCATTTGTTCTTGCCCTGCTCTCCCACCTACCTAACAGAGCTG GAACAGCAACACCGTCCAGAACGACCTGACGCTGATGAAGCTGAGCTCAC CTGTCGTGTTGACGGACCAGGTGAGCCCCGCCTGTCTACCTGAGTCGGAC ACACCTGCCGGGACCGAGTGTTACACCACCGGCTGGGGAAGCACAGGTAA GTGCATATGCCAGTGTGTCTGTGTGAAAATGATGGAACATTAATTTACTG ACACTTTTGTTAAAAACGTTTTTACTTGGGGTGGACTTCTCAAGTACAAT CGTCCCCGGTCCCAGGGAAAAAATACACCGGATTCAAGTCGTAACCTAAT CGTGAATACATCGACTGGGTTCCCGCCGGGACCCGGTTGATTTTAAGTGC GAATTAAGATCAACCGGGGGCCCAATTGAGCTCCTTAGATAGCTGGTAGT CCCACGGGCCCGAAGGCGCAAACAAAACCAACCCGTATCATACCCGGCGG GGCATCGGTTTTGAAATGTTACTGTAGCATGGCAGTGAAAGTCGCTGTCA ATGAAAGGACCTAACATACTGCATTGCCACAGGGTCTGGCCTGTCGGAGG TCCTGCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTCCACCTGTGTGAGT TACCTGGGCGCCTCCTCCATCGACACCAACACCATGATCTGTGCCGGGTA CGACCAGGGCGGGGTCGACGCCTGCCAGGTAGACAACACAAGTCTCTATG TGTATTTCTTAAGCATGAGAACATACTGCGTCTTACTTTTTGGCCTATTC AAAATTAAATCATAACTTGAAATTTTATAGAACATGATTCATCACCATCA TCGTGTAATTGCTTGGCCATATTTCTTACTATCTCCTGTTGTCGTCTTAT TTCTTATCCTATTCAAAATAAATCCTAACTTTAAGCGCATAACAAGTTGA CAAAACTTCACAAGTTCGACACTAACAACAATGGATCTTGCCGCCTGCCC AGGGCGACAGCGGCGGCCCCTTGGTGTGCCAGCGTGCCGACGGGACCTGG GAGCTGGCCGGGGTGGTCAGCTGGGGGATCGGCTGTGCGCAGGCCCGCAA ACCCGGCGTCTACACACGGGTCTTTAACTACGTGGACTGGATCGGCTACA AGATGGAGACTAACTAGAGTACAGGAGGCACAGTTCTTAATTCATTCATA TCAGTTCATTTTAAACCCCTAATAACGGCGCATATGCATATAATCAACGA AAAGGCCGAACTTTGTCATTCTAGTTACAGTGAAAAAAGTAAAGGTGTGA AGATGAAAAGATGAAAAATGAAAAATGCAAAGCAGCAGATAGATATGCGA TAGTCCACAATATTAGACGTGCTTCCTTGAAAAAAAAAGGGCCTATCGTG TCTGTAATGTTTCAATGTTCTTGTCGAGTGTTCTTTTAGAGAGAGAAGCC ATAGTTCTTCAGCTGTTGCGTTTGTGCCTTATCTTCAATAAAAAGTGACC AAGCTAGCACATCACGGTCATAACACGATTAACGTCATTAATCAACCAGC AGCCTTCCCTGTAAGACAATGAGAATAATGTAATAGTTACTAATAAATGA GACATAGCTTAGAACGAGATATCGTTGCTTACGCGAAAGGCTTGAAAAAC ATTGTTAATGGTGACATGTTGCAAATCAGTCGAATAAACAC

Coding sequence (CDS) from alignment at Sc0000307:276858..279598-

>transcript:BL96938_cuf4 ID=transcript:BL96938_cuf4|Name=transcript:BL96938_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3945bp|location=Sequence derived from alignment at Sc0000307:276858..279598- (Branchiostoma lanceolatum)
AAAAATTCGATCTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGAAGGTTC
GTGCGGCACCCCCGCCATCCCGCCGTCTCTGACGCGCGTGGTGGGCGGGA
CCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGCTACCGC
GGCTCGCACACGTGCGGCGGCACTCTCATCCACCCGGACTGGGTCCTCAC
CGCCGCGCACTGCGTGGACGGGAGAGCAAGCCCCGAGCCATGGACCATCC
TCCTCGGGAAAGAACACCGCAACGCAGAGGACCCCACACAGCAGACCCGC
AGTGTGACAAAGGTCATCGTGCACGAGAGCTGGAACAGCAACACCGTCCA
GAACGACCTGACGCTGATGAAGCTGAGCTCACCTGTCGTGTTGACGGACC
AGGTGAGCCCCGCCTGTCTACCTGAGTCGGACACACCTGCCGGGACCGAG
TGTTACACCACCGGCTGGGGAAGCACAGGGTCTGGCCTGTCGGAGGTCCT
GCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTCCACCTGTGTGAGTTACC
TGGGCGCCTCCTCCATCGACACCAACACCATGATCTGTGCCGGGTACGAC
CAGGGCGGGGTCGACGCCTGCCAGGGCGACAGCGGCGGCCCCTTGGTGTG
CCAGCGTGCCGACGGGACCTGGGAGCTGGCCGGGGTGGTCAGCTGGGGGA
TCGGCTGTGCGCAGGCCCGCAAACCCGGCGTCTACACACGGGTCTTTAAC
TACGTGGACTGGATCGGCTACAAGATGGAGACTAACTAGAAAAATTCGAT
CTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGAAGGTTCGTGCGGCACCC
CCGCCATCCCGCCGTCTCTGACGCGCGTGGTGGGCGGGACCGTGTCGGTG
CCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGCTACCGCGGCTCGCACAC
GTGCGGCGGCACTCTCATCCACCCGGACTGGGTCCTCACCGCCGCGCACT
GCGTGGACGGGAGAGCAAGCCCCGAGCCATGGACCATCCTCCTCGGGAAA
GAACACCGCAACGCAGAGGACCCCACACAGCAGACCCGCAGTGTGACAAA
GGTCATCGTGCACGAGAGCTGGAACAGCAACACCGTCCAGAACGACCTGA
CGCTGATGAAGCTGAGCTCACCTGTCGTGTTGACGGACCAGGTGAGCCCC
GCCTGTCTACCTGAGTCGGACACACCTGCCGGGACCGAGTGTTACACCAC
CGGCTGGGGAAGCACAGGGTCTGGCCTGTCGGAGGTCCTGCTGCAGGGTA
AAGTGCCCATCGTGGCTCCGTCCACCTGTGTGAGTTACCTGGGCGCCTCC
TCCATCGACACCAACACCATGATCTGTGCCGGGTACGACCAGGGCGGGGT
CGACGCCTGCCAGGGCGACAGCGGCGGCCCCTTGGTGTGCCAGCGTGCCG
ACGGGACCTGGGAGCTGGCCGGGGTGGTCAGCTGGGGGATCGGCTGTGCG
CAGGCCCGCAAACCCGGCGTCTACACACGGGTCTTTAACTACGTGGACTG
GATCGGCTACAAGATGGAGACTAACTAGAAAAATTCGATCTCTCTTTCTC
CCCCAGCTCCTCTGGCCGGAGAAGGTTCGTGCGGCACCCCCGCCATCCCG
CCGTCTCTGACGCGCGTGGTGGGCGGGACCGTGTCGGTGCCCGGCAGCTG
GCCCTGGCAGATCTCCCTTCGCTACCGCGGCTCGCACACGTGCGGCGGCA
CTCTCATCCACCCGGACTGGGTCCTCACCGCCGCGCACTGCGTGGACGGG
AGAGCAAGCCCCGAGCCATGGACCATCCTCCTCGGGAAAGAACACCGCAA
CGCAGAGGACCCCACACAGCAGACCCGCAGTGTGACAAAGGTCATCGTGC
ACGAGAGCTGGAACAGCAACACCGTCCAGAACGACCTGACGCTGATGAAG
CTGAGCTCACCTGTCGTGTTGACGGACCAGGTGAGCCCCGCCTGTCTACC
TGAGTCGGACACACCTGCCGGGACCGAGTGTTACACCACCGGCTGGGGAA
GCACAGGGTCTGGCCTGTCGGAGGTCCTGCTGCAGGGTAAAGTGCCCATC
GTGGCTCCGTCCACCTGTGTGAGTTACCTGGGCGCCTCCTCCATCGACAC
CAACACCATGATCTGTGCCGGGTACGACCAGGGCGGGGTCGACGCCTGCC
AGGGCGACAGCGGCGGCCCCTTGGTGTGCCAGCGTGCCGACGGGACCTGG
GAGCTGGCCGGGGTGGTCAGCTGGGGGATCGGCTGTGCGCAGGCCCGCAA
ACCCGGCGTCTACACACGGGTCTTTAACTACGTGGACTGGATCGGCTACA
AGATGGAGACTAACTAGAAAAATTCGATCTCTCTTTCTCCCCCAGCTCCT
CTGGCCGGAGAAGGTTCGTGCGGCACCCCCGCCATCCCGCCGTCTCTGAC
GCGCGTGGTGGGCGGGACCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGA
TCTCCCTTCGCTACCGCGGCTCGCACACGTGCGGCGGCACTCTCATCCAC
CCGGACTGGGTCCTCACCGCCGCGCACTGCGTGGACGGGAGAGCAAGCCC
CGAGCCATGGACCATCCTCCTCGGGAAAGAACACCGCAACGCAGAGGACC
CCACACAGCAGACCCGCAGTGTGACAAAGGTCATCGTGCACGAGAGCTGG
AACAGCAACACCGTCCAGAACGACCTGACGCTGATGAAGCTGAGCTCACC
TGTCGTGTTGACGGACCAGGTGAGCCCCGCCTGTCTACCTGAGTCGGACA
CACCTGCCGGGACCGAGTGTTACACCACCGGCTGGGGAAGCACAGGGTCT
GGCCTGTCGGAGGTCCTGCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTC
CACCTGTGTGAGTTACCTGGGCGCCTCCTCCATCGACACCAACACCATGA
TCTGTGCCGGGTACGACCAGGGCGGGGTCGACGCCTGCCAGGGCGACAGC
GGCGGCCCCTTGGTGTGCCAGCGTGCCGACGGGACCTGGGAGCTGGCCGG
GGTGGTCAGCTGGGGGATCGGCTGTGCGCAGGCCCGCAAACCCGGCGTCT
ACACACGGGTCTTTAACTACGTGGACTGGATCGGCTACAAGATGGAGACT
AACTAGAAAAATTCGATCTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGA
AGGTTCGTGCGGCACCCCCGCCATCCCGCCGTCTCTGACGCGCGTGGTGG
GCGGGACCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGC
TACCGCGGCTCGCACACGTGCGGCGGCACTCTCATCCACCCGGACTGGGT
CCTCACCGCCGCGCACTGCGTGGACGGGAGAGCAAGCCCCGAGCCATGGA
CCATCCTCCTCGGGAAAGAACACCGCAACGCAGAGGACCCCACACAGCAG
ACCCGCAGTGTGACAAAGGTCATCGTGCACGAGAGCTGGAACAGCAACAC
CGTCCAGAACGACCTGACGCTGATGAAGCTGAGCTCACCTGTCGTGTTGA
CGGACCAGGTGAGCCCCGCCTGTCTACCTGAGTCGGACACACCTGCCGGG
ACCGAGTGTTACACCACCGGCTGGGGAAGCACAGGGTCTGGCCTGTCGGA
GGTCCTGCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTCCACCTGTGTGA
GTTACCTGGGCGCCTCCTCCATCGACACCAACACCATGATCTGTGCCGGG
TACGACCAGGGCGGGGTCGACGCCTGCCAGGGCGACAGCGGCGGCCCCTT
GGTGTGCCAGCGTGCCGACGGGACCTGGGAGCTGGCCGGGGTGGTCAGCT
GGGGGATCGGCTGTGCGCAGGCCCGCAAACCCGGCGTCTACACACGGGTC
TTTAACTACGTGGACTGGATCGGCTACAAGATGGAGACTAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96938gene:BL96938Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96938_cuf4transcript:BL96938_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96938_cuf4-E1BL96938_cuf4-E1-1564476830-431756Branchiostoma lanceolatumexon
BL96938_cuf4-E2BL96938_cuf4-E2-1564476830-431753Branchiostoma lanceolatumexon
BL96938_cuf4-E3BL96938_cuf4-E3-1564476830-431751Branchiostoma lanceolatumexon
BL96938_cuf4-E4BL96938_cuf4-E4-1564476830-431749Branchiostoma lanceolatumexon
BL96938_cuf4-E5BL96938_cuf4-E5-1564476830-431747Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000307genomeSc0000307:276858..279598 -
Properties
Property NameValue
Transcript idBL96938_cuf4
Biotypeprotein_coding