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transcript:BL96935_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96935_cuf1
Unique Nametranscript:BL96935_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96935_cuf1

>transcript:BL96935_cuf1-protein ID=transcript:BL96935_cuf1-protein|Name=transcript:BL96935_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=183bp
SAPKTSGTDNNGFTPPSDDTELHTAVNSGDADHVRTLLDQPGVDVNAKGD
GNFTPLHLAVINNDVSIVKLLLERDADIYAEGADHVSPWRLSQAAHCSLQ
ILQMILKAAVDLRGDVVDSNLGASSPRKAVPAADCGWAVMEVAKSGGSQS
AEKLRSLLEIGGDVILTQRDSRGRTVLHHAVTN
Run BLAST on NCBI

mRNA from alignment at Sc0000145:207179..209699-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96935_cuf1 ID=transcript:BL96935_cuf1|Name=transcript:BL96935_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2521bp|location=Sequence derived from alignment at Sc0000145:207179..209699- (Branchiostoma lanceolatum)
CTCTGCGCCAAAGGTAAAGTTAACATCTACTAACATCATTCCGCCAGGGT ACATAATTCCGCCACCCCGAAAAGATATACGTTCAACCAAATTTCCAACC CAAAGTCCCCACGTGTAATGTACTCCTGTATATCTAAACTGTGCATACCT ATACCTGGGGGTTAGATTTCTCAAACACACTGTATTCTAAAGTAACGGAT TCATGTAACCCGGCGGATTAATGTTAATGGAGGTTACATCAAAACTAGAA AGCTAAACATTTTGTTCCTTTAACTTATGTTTATGACTGGGGTGATCCAT TTTTTTAGTGGAAGTATTCTAGAATGGTCCATCATGAATGAGATTGTATG TGGAAGAGTCTATTCTTGCATAGGGGTCAATAGGGGAAATCTCCATTTCA GGCTGGGATGACTTTTGCAGTAGAAAACGTTTTGGCAGAAGTATTTTCTT GATATTTCAATTTGCCCAAGTGTTATTTTGGAACAGTCCATTTTTTTGCA TGGGGAGGAGTATGGCTAAATATGCTGTGTTTGCTTAGGGCCAAATGGCG GCCTTTCTAGTTTTAGAGCAGTATTAGAAGTCCTGTTAGTGGCATTATAT ATTCTTTTTATCTGTATGCCTGTACTTAGGCCGATCGGTACAACAAAGGT TATCATTCTATTCCTAACAGACGTCCGGTACCGACAACAATGGCTTCACG CCACCTTCCGACGACACAGAACTTCACACAGCTGTCAATTCTGGGGACGC CGATCACGTCAGGGTACGTCGCACATTATTACTCATCTCTAATCAATCCT AACATTTTCTACGAAAGCCCACAACGACACACCTTGGAGGCATCTCGGAA GCATCTCAAAGGCCTCCGAGAAGCCTCCGCGCGCTGCCTCCGAGATACCT TCGAGATGCTTCCGAAATGCCTCCGAAATACCTCCGAAATGCCTCCGAAA TGCCTCCGAGATGCCTCCGAAATGCCTCCGAGATGAGTCCGAAATACCTC CGAGATGCCTCCGAAATGCCTCTGAGATGCCTTCGAGATGCCTCCGAGAT GTGTAGTTACGGGCTTTCGTAATTTACATACCTAGACATTGATAGTGACG ACTTAGTCGTTCAAAGAAAGATGTTTTGAAAATAAGATGATAACTTGTCG AATTGACATGGATTTCTACGGACTTATCCATGCTCAATAAGGACGTTAGA CATTCTACCTACATAACGTTAACTTTATGACCTTGCTTACGACAACGTCC CAACATTGTCTGGGGAAGTTCGGGAGGGCATGGTCGGCTACAATGTATGT GTGACAGGAGTTTTACTCTCAAGAATGTTTTGCAATCTCTTCGTTTCTTC TAAAAGATTCTGCATACATTTGTGTAGACGCTTTTGGATCAACCAGGAGT GGATGTGAACGCAAAGGGAGATGGGAACTTCACCCCCCTACACCTGGCAG TCATCAACAACGACGTCTCCATAGTCAAACTTTTGGTACGTCCGCAACTT TTGTGACAGTAACACTAGTTACAGTGCGTTCTTAGTCTTAATTATCAAAC ACTTCTGACCAAATTGGAAACTGAATGGATTTTTCCACAAAATCATCTAT TCCAAAAGTATGGTGCTGCTCAAAGACCAATTCCTTGGGGAATACATTGG CGGATTTTCTATAACATTTTCAGTTCAATCGCAGTACTATGCTTCGCTCC TGAAGCGTCGCCAGAAAAAGTAAAGCCAACGTTACTGTCCCTTCTTAAAC TGAATTTTGTTATGACACTCTCCGCAGTTGGAGAGGGATGCAGACATCTA CGCCGAAGGTGCAGATCACGTGTCCCCCTGGCGGTTGTCCCAGGCAGCGC ACTGCTCTCTGCAGATCCTACAGATGATCCTAAAGGCTGCAGTAGACCTC CGAGGGGACGTTGTGTAAGTTCAATGATTCTAATACATGGTGTAATTGTA TTATTTGAATGAAACGCTTTCACATTTCTAGTCGTAGCAGCTGTGAAAAA AAAACATGGCATGGAATCATTTTCTTCTACTCAGATATCTTGCATGCATC CGTAGATAGTTTCATCGGGTACGTCACTAGAAAACAAAGTTCTTATGAAC TACAGGTGTGTATGTGTAAATTCTGTACGTTTGGGGACCGCATCTGTTAG CAGCGACACCTAGCTGCAGTTCGAAATAGCACAAGCAGTATTGCCATAAT ATGAAGAAGGTGACAGACGGTCACCGAAAAGTCGGCTTGAACAAAGCACT TGGCTGTGTACATATGACTTTGTTATCCACTACTATATTGCATGTATATC GATTTTTTCATGACGTTCCAGTGATTCCAATCTGGGCGCGTCATCGCCCA GAAAGGCGGTTCCAGCGGCAGACTGCGGCTGGGCGGTGATGGAAGTCGCT AAGAGCGGCGGCAGTCAGTCGGCAGAGAAGCTCAGAAGCCTCCTGGAAAT CGGCGGTGATGTCATTCTGACACAGCGGGACTCTCGCGGCAGGACAGTAC TGCATCACGCGGTGACCAATC

Coding sequence (CDS) from alignment at Sc0000145:207179..209699-

>transcript:BL96935_cuf1 ID=transcript:BL96935_cuf1|Name=transcript:BL96935_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2745bp|location=Sequence derived from alignment at Sc0000145:207179..209699- (Branchiostoma lanceolatum)
TCTGCGCCAAAGACGTCCGGTACCGACAACAATGGCTTCACGCCACCTTC
CGACGACACAGAACTTCACACAGCTGTCAATTCTGGGGACGCCGATCACG
TCAGGACGCTTTTGGATCAACCAGGAGTGGATGTGAACGCAAAGGGAGAT
GGGAACTTCACCCCCCTACACCTGGCAGTCATCAACAACGACGTCTCCAT
AGTCAAACTTTTGTTGGAGAGGGATGCAGACATCTACGCCGAAGGTGCAG
ATCACGTGTCCCCCTGGCGGTTGTCCCAGGCAGCGCACTGCTCTCTGCAG
ATCCTACAGATGATCCTAAAGGCTGCAGTAGACCTCCGAGGGGACGTTGT
TGATTCCAATCTGGGCGCGTCATCGCCCAGAAAGGCGGTTCCAGCGGCAG
ACTGCGGCTGGGCGGTGATGGAAGTCGCTAAGAGCGGCGGCAGTCAGTCG
GCAGAGAAGCTCAGAAGCCTCCTGGAAATCGGCGGTGATGTCATTCTGAC
ACAGCGGGACTCTCGCGGCAGGACAGTACTGCATCACGCGGTGACCAATT
CTGCGCCAAAGACGTCCGGTACCGACAACAATGGCTTCACGCCACCTTCC
GACGACACAGAACTTCACACAGCTGTCAATTCTGGGGACGCCGATCACGT
CAGGACGCTTTTGGATCAACCAGGAGTGGATGTGAACGCAAAGGGAGATG
GGAACTTCACCCCCCTACACCTGGCAGTCATCAACAACGACGTCTCCATA
GTCAAACTTTTGTTGGAGAGGGATGCAGACATCTACGCCGAAGGTGCAGA
TCACGTGTCCCCCTGGCGGTTGTCCCAGGCAGCGCACTGCTCTCTGCAGA
TCCTACAGATGATCCTAAAGGCTGCAGTAGACCTCCGAGGGGACGTTGTT
GATTCCAATCTGGGCGCGTCATCGCCCAGAAAGGCGGTTCCAGCGGCAGA
CTGCGGCTGGGCGGTGATGGAAGTCGCTAAGAGCGGCGGCAGTCAGTCGG
CAGAGAAGCTCAGAAGCCTCCTGGAAATCGGCGGTGATGTCATTCTGACA
CAGCGGGACTCTCGCGGCAGGACAGTACTGCATCACGCGGTGACCAATTC
TGCGCCAAAGACGTCCGGTACCGACAACAATGGCTTCACGCCACCTTCCG
ACGACACAGAACTTCACACAGCTGTCAATTCTGGGGACGCCGATCACGTC
AGGACGCTTTTGGATCAACCAGGAGTGGATGTGAACGCAAAGGGAGATGG
GAACTTCACCCCCCTACACCTGGCAGTCATCAACAACGACGTCTCCATAG
TCAAACTTTTGTTGGAGAGGGATGCAGACATCTACGCCGAAGGTGCAGAT
CACGTGTCCCCCTGGCGGTTGTCCCAGGCAGCGCACTGCTCTCTGCAGAT
CCTACAGATGATCCTAAAGGCTGCAGTAGACCTCCGAGGGGACGTTGTTG
ATTCCAATCTGGGCGCGTCATCGCCCAGAAAGGCGGTTCCAGCGGCAGAC
TGCGGCTGGGCGGTGATGGAAGTCGCTAAGAGCGGCGGCAGTCAGTCGGC
AGAGAAGCTCAGAAGCCTCCTGGAAATCGGCGGTGATGTCATTCTGACAC
AGCGGGACTCTCGCGGCAGGACAGTACTGCATCACGCGGTGACCAATTCT
GCGCCAAAGACGTCCGGTACCGACAACAATGGCTTCACGCCACCTTCCGA
CGACACAGAACTTCACACAGCTGTCAATTCTGGGGACGCCGATCACGTCA
GGACGCTTTTGGATCAACCAGGAGTGGATGTGAACGCAAAGGGAGATGGG
AACTTCACCCCCCTACACCTGGCAGTCATCAACAACGACGTCTCCATAGT
CAAACTTTTGTTGGAGAGGGATGCAGACATCTACGCCGAAGGTGCAGATC
ACGTGTCCCCCTGGCGGTTGTCCCAGGCAGCGCACTGCTCTCTGCAGATC
CTACAGATGATCCTAAAGGCTGCAGTAGACCTCCGAGGGGACGTTGTTGA
TTCCAATCTGGGCGCGTCATCGCCCAGAAAGGCGGTTCCAGCGGCAGACT
GCGGCTGGGCGGTGATGGAAGTCGCTAAGAGCGGCGGCAGTCAGTCGGCA
GAGAAGCTCAGAAGCCTCCTGGAAATCGGCGGTGATGTCATTCTGACACA
GCGGGACTCTCGCGGCAGGACAGTACTGCATCACGCGGTGACCAATTCTG
CGCCAAAGACGTCCGGTACCGACAACAATGGCTTCACGCCACCTTCCGAC
GACACAGAACTTCACACAGCTGTCAATTCTGGGGACGCCGATCACGTCAG
GACGCTTTTGGATCAACCAGGAGTGGATGTGAACGCAAAGGGAGATGGGA
ACTTCACCCCCCTACACCTGGCAGTCATCAACAACGACGTCTCCATAGTC
AAACTTTTGTTGGAGAGGGATGCAGACATCTACGCCGAAGGTGCAGATCA
CGTGTCCCCCTGGCGGTTGTCCCAGGCAGCGCACTGCTCTCTGCAGATCC
TACAGATGATCCTAAAGGCTGCAGTAGACCTCCGAGGGGACGTTGTTGAT
TCCAATCTGGGCGCGTCATCGCCCAGAAAGGCGGTTCCAGCGGCAGACTG
CGGCTGGGCGGTGATGGAAGTCGCTAAGAGCGGCGGCAGTCAGTCGGCAG
AGAAGCTCAGAAGCCTCCTGGAAATCGGCGGTGATGTCATTCTGACACAG
CGGGACTCTCGCGGCAGGACAGTACTGCATCACGCGGTGACCAAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96935gene:BL96935Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96935_cuf1transcript:BL96935_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96935_cuf1-E1BL96935_cuf1-E1-1564476830-344730Branchiostoma lanceolatumexon
BL96935_cuf1-E2BL96935_cuf1-E2-1564476830-344727Branchiostoma lanceolatumexon
BL96935_cuf1-E3BL96935_cuf1-E3-1564476830-344725Branchiostoma lanceolatumexon
BL96935_cuf1-E4BL96935_cuf1-E4-1564476830-344723Branchiostoma lanceolatumexon
BL96935_cuf1-E5BL96935_cuf1-E5-1564476830-344721Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000145genomeSc0000145:207179..209699 -
Properties
Property NameValue
Transcript idBL96935_cuf1
Biotypeprotein_coding