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transcript:BL96933_cuf12 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96933_cuf12
Unique Nametranscript:BL96933_cuf12
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96933_cuf12

>transcript:BL96933_cuf12-protein ID=transcript:BL96933_cuf12-protein|Name=transcript:BL96933_cuf12|organism=Branchiostoma lanceolatum|type=polypeptide|length=102bp
TVVDQSSPADLPCTNQGGKCQDYSVRTCLAGYETGKCGGNALRRCCLQCD
SSCESDHQTWSAGDSGCSNAGGQCKMDSNYCNGQYQTGLCGGPAGRKCCV
PG
Run BLAST on NCBI

mRNA from alignment at Sc0000014:2280705..2281846+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96933_cuf12 ID=transcript:BL96933_cuf12|Name=transcript:BL96933_cuf12|organism=Branchiostoma lanceolatum|type=mRNA|length=1142bp|location=Sequence derived from alignment at Sc0000014:2280705..2281846+ (Branchiostoma lanceolatum)
CACAGTTGTGGACCAGTCGTCTCCCGCAGACTTGCCGTGCACCAATCAGG GTGGGAAGTGTCAGGACTACTCTGTAAGGACGTGTCTAGCAGGGTACGAG ACCGGCAAGTGCGGCGGCAACGCACTAAGGAGATGCTGCCTTCAGTGTGA CTCTTCATGTATGTCTTCCGTCCATGATATACTACTTGACTTTATGAATA TAGATATCTGCATCTAAACGAACATTTTGACATACTTCATCGCTTTTGCC AAATAATAATCTTTCTAATCTTGAACCATCAGGTGAGTCCGACCACCAGA CATGGTCTGCAGGAGACAGCGGCTGTTCTAACGCGGGGGGTCAGTGTAAG ATGGACAGTAACTACTGTAACGGACAGTACCAGACCGGGTTGTGTGGAGG ACCGGCTGGGAGGAAGTGTTGTGTCCCAGGTCAGTAAAAAGAGGAGGAAC CTTCTTTGTCTACTTTTGATACTTTCTATGTAAGAAACTGTGATGTATTG ACCGAATTTTTCTTTCTTCCCAGGCTAATATTAGGAGGCAGGTGGAAACT CAAAGAGCACATCCCTGCCCATATCTACATACACGTAAATGGACATCATT TTCATCAGACATCAATATCGACATACAAGTTAAAATGCATCCTTTTTGAA GTACTCCATCCAGCTCATCCGCGAGTTCGGTTGGCCTTAATGTCACACAA AGTGTAGCGTTTCTACGATTTTAAGATTAGGTTGTTTTCTTAAGACTGGA TGTTTATTGTGTTACATGTTACTTGTACGTAATTTCAGTTACTTTGAACA GTGTTTATGGTGTCAATATTATATGATTCTCTTAGCAATATTTCCTGTGC GAAATGTCTTAAAAGTGTATTTTTCCCCGACAATCTCTATTATGTATTTC AGAGTCGGACAATAATTCAAAACTACTGAGCTGGATAATTTTCACAGTCA CACACATTTACTTGATCACTGGGCAGCGACTGAAAATGTCAACGTTTAAA GGTTACTTACTCATTGTGCACCTACCAAACCTGTTTTTCTTCCAGCTGTT ATTGTGTTTGGGTGCTATCAAAAGACTGCCATTATACACAATTAACATAC ATATGGTTGAATAGACTTGTCTCTGTCAATCACCTTACAGTC

Coding sequence (CDS) from alignment at Sc0000014:2280705..2281846+

>transcript:BL96933_cuf12 ID=transcript:BL96933_cuf12|Name=transcript:BL96933_cuf12|organism=Branchiostoma lanceolatum|type=CDS|length=927bp|location=Sequence derived from alignment at Sc0000014:2280705..2281846+ (Branchiostoma lanceolatum)
ACAGTTGTGGACCAGTCGTCTCCCGCAGACTTGCCGTGCACCAATCAGGG
TGGGAAGTGTCAGGACTACTCTGTAAGGACGTGTCTAGCAGGGTACGAGA
CCGGCAAGTGCGGCGGCAACGCACTAAGGAGATGCTGCCTTCAGTGTGAC
TCTTCATGTGAGTCCGACCACCAGACATGGTCTGCAGGAGACAGCGGCTG
TTCTAACGCGGGGGGTCAGTGTAAGATGGACAGTAACTACTGTAACGGAC
AGTACCAGACCGGGTTGTGTGGAGGACCGGCTGGGAGGAAGTGTTGTGTC
CCAGGCTAAACAGTTGTGGACCAGTCGTCTCCCGCAGACTTGCCGTGCAC
CAATCAGGGTGGGAAGTGTCAGGACTACTCTGTAAGGACGTGTCTAGCAG
GGTACGAGACCGGCAAGTGCGGCGGCAACGCACTAAGGAGATGCTGCCTT
CAGTGTGACTCTTCATGTGAGTCCGACCACCAGACATGGTCTGCAGGAGA
CAGCGGCTGTTCTAACGCGGGGGGTCAGTGTAAGATGGACAGTAACTACT
GTAACGGACAGTACCAGACCGGGTTGTGTGGAGGACCGGCTGGGAGGAAG
TGTTGTGTCCCAGGCTAAACAGTTGTGGACCAGTCGTCTCCCGCAGACTT
GCCGTGCACCAATCAGGGTGGGAAGTGTCAGGACTACTCTGTAAGGACGT
GTCTAGCAGGGTACGAGACCGGCAAGTGCGGCGGCAACGCACTAAGGAGA
TGCTGCCTTCAGTGTGACTCTTCATGTGAGTCCGACCACCAGACATGGTC
TGCAGGAGACAGCGGCTGTTCTAACGCGGGGGGTCAGTGTAAGATGGACA
GTAACTACTGTAACGGACAGTACCAGACCGGGTTGTGTGGAGGACCGGCT
GGGAGGAAGTGTTGTGTCCCAGGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96933gene:BL96933Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96933_cuf12transcript:BL96933_cuf12-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96933_cuf12-E1BL96933_cuf12-E1-1564476830-120770Branchiostoma lanceolatumexon
BL96933_cuf12-E2BL96933_cuf12-E2-1564476830-120772Branchiostoma lanceolatumexon
BL96933_cuf12-E3BL96933_cuf12-E3-1564476830-120775Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:2280705..2281846 +
Properties
Property NameValue
Transcript idBL96933_cuf12
Biotypeprotein_coding