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transcript:BL96931_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96931_cuf2
Unique Nametranscript:BL96931_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96931_cuf2

>transcript:BL96931_cuf2-protein ID=transcript:BL96931_cuf2-protein|Name=transcript:BL96931_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=173bp
NTQHNLGISKVDGDTVKIWVKARDIMGNEITDSVTAHIDSSGPVIENLWL
ASGEETNLVVHNSVDLYEMQIQFDAFDQHSGLHDMTWTLADVKTSATIAT
GVVAVQTLTCGSSCTTNCVMAARGPCYKKDYVITFDRSQVDVGGHDHDYL
LTLTVRNKATLSTTETLKISVDT
Run BLAST on NCBI

mRNA from alignment at Sc0000014:2299075..2302654-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96931_cuf2 ID=transcript:BL96931_cuf2|Name=transcript:BL96931_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3580bp|location=Sequence derived from alignment at Sc0000014:2299075..2302654- (Branchiostoma lanceolatum)
AATACACAGCACAATTTAGGAATCAGTAAGGTGGACGGCGACACTGTCAA GATATGGGTGAAAGCAAGAGACATTATGGGCAACGAGATCACTGACAGCG TCACCGCGCACATCGATTCCTCGGGACCAGTCATCGAAAACCTGTGGCTT GCAAGCGGAGAGGAAACCAACCTTGTCGTACACAACTCCGTGGATCTGTA TGAAATGCAGTGAGTACTTTGATGTTCACTTCTCTTGTGGACTACGTCAT GACAAATATGTCATCCTGCATGGCATTCAAGTGACTTTACCTTCATGTAG TGGCACGGACAGATGTTGTGCAGTCTGTTCAAAAGTTTTTTTAATAATCT CTAGAGTATATTACTTTGTATGCTACTGTATCAAGAATTGAAAGGAAAAT TCACTGAAGTGAAAAAGAAGATAAGATCTTCCACGTCGGTAGTTTGTAGA AAGGGCCATAGGTGAAACACTGGCCCTACAAAGTTTTAAAAGCTGAGAAT CAGGGTTTCTATGACTCGTTTTCTCCTTCTAAAGTTATGTGACAGTGTAG GTGTTGATGTGAAGATTGTTTAATGAAGAGTGACAGAGGGGCAGGGATTA AGGTAAGGGTCACCACATGCGTCAATGCCTGGGGAGGAAGGTCTCAAACC CTCAAGCAATGTTGAGTCATATCACTGAACAAGAGAAGCCAATTATTGGA GCCAGTTTAAACCGGCAAGATTTTCCACATTTTCTACATTCAGACCATTC GAATTCCTTGACAAAAGTAAATAGAAACATTTTTGGTTCGACATCATTTG TGAGCATTGTAGCCTGTGCTTACATAATAATCTCTCCCTGGCTGGGGTTA ATGACCCCATGCCACTGTGAGAGCAATTTAGTTAGAAGGCTAGGAGCATG GGTGTTATCTTTGCAGTAGCGGTTATCTAGGCAACATTCCTGTATAATCT CTGGCCCAACATAATCACCTGTGATCAGTACTTTGCAGGACTGTCAATCA AACCAAGGTTATGTCCTTGATCAAACAGCACTCCTGCCCAACTACTTTAT AATCCTTCCCCCCCCACACACACACAATACTTACATGTTACTAAATCAAA GTTATATAAAATTATATAAATCCAATGTAACATACATTCTGAAACAAGTC TTAACTGTTATTTGCAATACAAAAAATTGGACATTTTGACTGTACAACAC CAGTCTTTGTCAAGGAATGTTAACATACATGTACCTCAGTGTCAGCTGGG CTTTATGAGTAGTCACACTTTAAGAGCCTGGTTGTAGCTCAAAGTGACTT ACAGTTGCTAACACATTTCCTTTATCTCACATTACTAACTGAATAAAAAA AATAGCAAGGAGGTTAAATAGAGAATCCATCCAACCTCCTTGAAAATAGA AAGAAAGAAAAAAGGAAATGCGAACATCATGATGATAGCTTAACTTTCTT TTGTGATTTGTTGGACATCAGGATTCAGTTTGACGCATTTGACCAGCATA GCGGACTCCATGACATGACCTGGACACTGGCCGACGTTAAAACGTCAGCC ACCATTGCAACAGGAGTGGTAGCTGTGCAAACGTTAACCGTATGTAACAT TTTCTGTAATGTAGAAAATAATGTACGCTAATCAATGTAATGGTGGCTGG TATATCAGTGGATGATCATTTCAGGATCGTGTCAGTATGACACATATACT TTTGTTGTCAAAGACTCATCACGTGAAGTCAGGGAGCTGTCTCCAATTTT TTTTTCTGTCCCTTTCAATATTTGAGAGCCAATGTTTTGATTTTCGTTGT TGAATCTGTCATCTTAAGCCTACAAAAATGCATTTTTATCAATTTCATGT CATGAAGTTCCCATTTTTGGGACGGACAAGGTAAAAAATTGTTCTGTCCC AACAAGCAAATTTCCGTCCTGGGATGGATGGTCGGGTGGAGACAGCCCTG CATGAAGTACACTTGATACCAAAGCCAAGGCTGAAATACATCTACAATGT ATTTTGCCAACGCCTCTGTTTCATCAAGTAACTTCTTGCTGTGTACTTTT CAAACAAGTATGATAGTTCTGTATCTGTATCTAAATAGCCGGTATNTGTT AATCATATGATAATCTATCATACACTATATGTTTTTGTTTTATCTTACAT GGAGATATACTATCAGTTTTTCCTATCCTTTACTTACTTGGCAGGTGCAT GTATGTCGTAACACGAATTTTGTGTATTTCTTGGTCCTAACCTTATTTTC TATCATTATATAAAATTATAAACAAAGCAATTTTTCACATATTTAAGTAC AGCATCTGTTTTTCTTCAGTGTGGAAGCAGCTGTACCACTAACTGTGTGA TGGCTGCAAGGGGACCATGTTACAAAAAAGATTACGTCATCACCTTTGAC CGAAGCCAGGTCGATGTGGGTGGACATGACCATGACTACCTCCTGACCCT CACTGTCAGGAACAAGGCCACTCTCAGCACAACAGAAACACTGAAGGTGA GTACTGATGCCTTGCTTTTATATTACAGGGGAGTACAATGATGTGTGTCG TCCATTCTTTGTATTCGACTCAGCGGGCTTGCCTGCTGTGAATTGATGAC ACTTGGCAGAAAAGGACAAAATGTGTGTTGGTCACAACATCGGCAATAGC TGCCTGTGTCTCAAGTGTATTCCACTGTTGCAATTCTAATCAAATCAAAT CAAAATCGAAAGGGACATTAATTATAACAGTTATAATTACAGCCCCCGTC CCAAATGACGACTGAAGTAGTTACTGCTGCCTATGAGAATAGCAGGATTA GATTTGTAGCGACATATTCTCCTGTAGATCCAAAGTTATCCTGGTTGCCT GGTTGGCATATTTCTTGGTTACACTTGGTTACACATACAGTGCTACGCTT GCACTCACTTGATAAGTAGTTTGATACGCCCTACCGTGTTTGTTGAAACT TTTGCCTAAGCCATCGGATACCAAGACATCGTCAGCTACAGTGTCTTCCG CCTCGATATGCCGCTGATTTCCTGTTAAAGAAAGGAAAGACAACGTCTAA GAGATAGAAACAAGCCCGTAGCACACCGCGGTGGGAGGGGGGGCGCGCTT GTCCTAATCTATAACACGAAAGTAAACGTCTTATCTATCTAACAACCTTC AAATGACTCTTAAAAGCACCACAAAACCTTTTCAGCTCTAGCATGTCACA AATATGCACATGGGCGTCCAGGAACCTGAAAGGATTGACGTGTCAACCAA GTTGAGATCTGCGAGAAAACCGATGATGATGAACTGGTGACCTCTGAACT TGATAGACAACCTTTGACCTTATTCGGTGAACCTGATGACACCATTTATT GTATTTATGTATCACCATATAGTTTTTAGATGTGTCGAGCGACAAGTTCC ATATGTCCATAGGTCCCATATGTCACCGGAGGAATGATAGTGTAACGGGC TCTTTAAAATCAGGGCACAGTGTATTCAAAGTTTCAAACCCATGTTAGAG TAAGTTAGAGCTAGCTTCAACATGTTTTATAGCTCACATTTGTCTGCCTT TTGTTTTGTTGTAGATATCAGTGGACACAT

Coding sequence (CDS) from alignment at Sc0000014:2299075..2302654-

>transcript:BL96931_cuf2 ID=transcript:BL96931_cuf2|Name=transcript:BL96931_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2076bp|location=Sequence derived from alignment at Sc0000014:2299075..2302654- (Branchiostoma lanceolatum)
AATACACAGCACAATTTAGGAATCAGTAAGGTGGACGGCGACACTGTCAA
GATATGGGTGAAAGCAAGAGACATTATGGGCAACGAGATCACTGACAGCG
TCACCGCGCACATCGATTCCTCGGGACCAGTCATCGAAAACCTGTGGCTT
GCAAGCGGAGAGGAAACCAACCTTGTCGTACACAACTCCGTGGATCTGTA
TGAAATGCAGATTCAGTTTGACGCATTTGACCAGCATAGCGGACTCCATG
ACATGACCTGGACACTGGCCGACGTTAAAACGTCAGCCACCATTGCAACA
GGAGTGGTAGCTGTGCAAACGTTAACCTGTGGAAGCAGCTGTACCACTAA
CTGTGTGATGGCTGCAAGGGGACCATGTTACAAAAAAGATTACGTCATCA
CCTTTGACCGAAGCCAGGTCGATGTGGGTGGACATGACCATGACTACCTC
CTGACCCTCACTGTCAGGAACAAGGCCACTCTCAGCACAACAGAAACACT
GAAGATATCAGTGGACACAAATACACAGCACAATTTAGGAATCAGTAAGG
TGGACGGCGACACTGTCAAGATATGGGTGAAAGCAAGAGACATTATGGGC
AACGAGATCACTGACAGCGTCACCGCGCACATCGATTCCTCGGGACCAGT
CATCGAAAACCTGTGGCTTGCAAGCGGAGAGGAAACCAACCTTGTCGTAC
ACAACTCCGTGGATCTGTATGAAATGCAGATTCAGTTTGACGCATTTGAC
CAGCATAGCGGACTCCATGACATGACCTGGACACTGGCCGACGTTAAAAC
GTCAGCCACCATTGCAACAGGAGTGGTAGCTGTGCAAACGTTAACCTGTG
GAAGCAGCTGTACCACTAACTGTGTGATGGCTGCAAGGGGACCATGTTAC
AAAAAAGATTACGTCATCACCTTTGACCGAAGCCAGGTCGATGTGGGTGG
ACATGACCATGACTACCTCCTGACCCTCACTGTCAGGAACAAGGCCACTC
TCAGCACAACAGAAACACTGAAGATATCAGTGGACACAAATACACAGCAC
AATTTAGGAATCAGTAAGGTGGACGGCGACACTGTCAAGATATGGGTGAA
AGCAAGAGACATTATGGGCAACGAGATCACTGACAGCGTCACCGCGCACA
TCGATTCCTCGGGACCAGTCATCGAAAACCTGTGGCTTGCAAGCGGAGAG
GAAACCAACCTTGTCGTACACAACTCCGTGGATCTGTATGAAATGCAGAT
TCAGTTTGACGCATTTGACCAGCATAGCGGACTCCATGACATGACCTGGA
CACTGGCCGACGTTAAAACGTCAGCCACCATTGCAACAGGAGTGGTAGCT
GTGCAAACGTTAACCTGTGGAAGCAGCTGTACCACTAACTGTGTGATGGC
TGCAAGGGGACCATGTTACAAAAAAGATTACGTCATCACCTTTGACCGAA
GCCAGGTCGATGTGGGTGGACATGACCATGACTACCTCCTGACCCTCACT
GTCAGGAACAAGGCCACTCTCAGCACAACAGAAACACTGAAGATATCAGT
GGACACAAATACACAGCACAATTTAGGAATCAGTAAGGTGGACGGCGACA
CTGTCAAGATATGGGTGAAAGCAAGAGACATTATGGGCAACGAGATCACT
GACAGCGTCACCGCGCACATCGATTCCTCGGGACCAGTCATCGAAAACCT
GTGGCTTGCAAGCGGAGAGGAAACCAACCTTGTCGTACACAACTCCGTGG
ATCTGTATGAAATGCAGATTCAGTTTGACGCATTTGACCAGCATAGCGGA
CTCCATGACATGACCTGGACACTGGCCGACGTTAAAACGTCAGCCACCAT
TGCAACAGGAGTGGTAGCTGTGCAAACGTTAACCTGTGGAAGCAGCTGTA
CCACTAACTGTGTGATGGCTGCAAGGGGACCATGTTACAAAAAAGATTAC
GTCATCACCTTTGACCGAAGCCAGGTCGATGTGGGTGGACATGACCATGA
CTACCTCCTGACCCTCACTGTCAGGAACAAGGCCACTCTCAGCACAACAG
AAACACTGAAGATATCAGTGGACACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96931gene:BL96931Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96931_cuf2transcript:BL96931_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96931_cuf2-E1BL96931_cuf2-E1-1564476830-120859Branchiostoma lanceolatumexon
BL96931_cuf2-E2BL96931_cuf2-E2-1564476830-120857Branchiostoma lanceolatumexon
BL96931_cuf2-E3BL96931_cuf2-E3-1564476830-120855Branchiostoma lanceolatumexon
BL96931_cuf2-E4BL96931_cuf2-E4-1564476830-120853Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:2299075..2302654 -
Properties
Property NameValue
Transcript idBL96931_cuf2
Biotypeprotein_coding