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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96931_cuf2 >transcript:BL96931_cuf2-protein ID=transcript:BL96931_cuf2-protein|Name=transcript:BL96931_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=173bp
NTQHNLGISKVDGDTVKIWVKARDIMGNEITDSVTAHIDSSGPVIENLWL
ASGEETNLVVHNSVDLYEMQIQFDAFDQHSGLHDMTWTLADVKTSATIAT
GVVAVQTLTCGSSCTTNCVMAARGPCYKKDYVITFDRSQVDVGGHDHDYL
LTLTVRNKATLSTTETLKISVDT Run BLAST on NCBI mRNA from alignment at Sc0000014:2299075..2302654- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96931_cuf2 ID=transcript:BL96931_cuf2|Name=transcript:BL96931_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3580bp|location=Sequence derived from alignment at Sc0000014:2299075..2302654- (Branchiostoma lanceolatum)
AATACACAGCACAATTTAGGAATCAGTAAGGTGGACGGCGACACTGTCAA
GATATGGGTGAAAGCAAGAGACATTATGGGCAACGAGATCACTGACAGCG
TCACCGCGCACATCGATTCCTCGGGACCAGTCATCGAAAACCTGTGGCTT
GCAAGCGGAGAGGAAACCAACCTTGTCGTACACAACTCCGTGGATCTGTA
TGAAATGCAGTGAGTACTTTGATGTTCACTTCTCTTGTGGACTACGTCAT
GACAAATATGTCATCCTGCATGGCATTCAAGTGACTTTACCTTCATGTAG
TGGCACGGACAGATGTTGTGCAGTCTGTTCAAAAGTTTTTTTAATAATCT
CTAGAGTATATTACTTTGTATGCTACTGTATCAAGAATTGAAAGGAAAAT
TCACTGAAGTGAAAAAGAAGATAAGATCTTCCACGTCGGTAGTTTGTAGA
AAGGGCCATAGGTGAAACACTGGCCCTACAAAGTTTTAAAAGCTGAGAAT
CAGGGTTTCTATGACTCGTTTTCTCCTTCTAAAGTTATGTGACAGTGTAG
GTGTTGATGTGAAGATTGTTTAATGAAGAGTGACAGAGGGGCAGGGATTA
AGGTAAGGGTCACCACATGCGTCAATGCCTGGGGAGGAAGGTCTCAAACC
CTCAAGCAATGTTGAGTCATATCACTGAACAAGAGAAGCCAATTATTGGA
GCCAGTTTAAACCGGCAAGATTTTCCACATTTTCTACATTCAGACCATTC
GAATTCCTTGACAAAAGTAAATAGAAACATTTTTGGTTCGACATCATTTG
TGAGCATTGTAGCCTGTGCTTACATAATAATCTCTCCCTGGCTGGGGTTA
ATGACCCCATGCCACTGTGAGAGCAATTTAGTTAGAAGGCTAGGAGCATG
GGTGTTATCTTTGCAGTAGCGGTTATCTAGGCAACATTCCTGTATAATCT
CTGGCCCAACATAATCACCTGTGATCAGTACTTTGCAGGACTGTCAATCA
AACCAAGGTTATGTCCTTGATCAAACAGCACTCCTGCCCAACTACTTTAT
AATCCTTCCCCCCCCACACACACACAATACTTACATGTTACTAAATCAAA
GTTATATAAAATTATATAAATCCAATGTAACATACATTCTGAAACAAGTC
TTAACTGTTATTTGCAATACAAAAAATTGGACATTTTGACTGTACAACAC
CAGTCTTTGTCAAGGAATGTTAACATACATGTACCTCAGTGTCAGCTGGG
CTTTATGAGTAGTCACACTTTAAGAGCCTGGTTGTAGCTCAAAGTGACTT
ACAGTTGCTAACACATTTCCTTTATCTCACATTACTAACTGAATAAAAAA
AATAGCAAGGAGGTTAAATAGAGAATCCATCCAACCTCCTTGAAAATAGA
AAGAAAGAAAAAAGGAAATGCGAACATCATGATGATAGCTTAACTTTCTT
TTGTGATTTGTTGGACATCAGGATTCAGTTTGACGCATTTGACCAGCATA
GCGGACTCCATGACATGACCTGGACACTGGCCGACGTTAAAACGTCAGCC
ACCATTGCAACAGGAGTGGTAGCTGTGCAAACGTTAACCGTATGTAACAT
TTTCTGTAATGTAGAAAATAATGTACGCTAATCAATGTAATGGTGGCTGG
TATATCAGTGGATGATCATTTCAGGATCGTGTCAGTATGACACATATACT
TTTGTTGTCAAAGACTCATCACGTGAAGTCAGGGAGCTGTCTCCAATTTT
TTTTTCTGTCCCTTTCAATATTTGAGAGCCAATGTTTTGATTTTCGTTGT
TGAATCTGTCATCTTAAGCCTACAAAAATGCATTTTTATCAATTTCATGT
CATGAAGTTCCCATTTTTGGGACGGACAAGGTAAAAAATTGTTCTGTCCC
AACAAGCAAATTTCCGTCCTGGGATGGATGGTCGGGTGGAGACAGCCCTG
CATGAAGTACACTTGATACCAAAGCCAAGGCTGAAATACATCTACAATGT
ATTTTGCCAACGCCTCTGTTTCATCAAGTAACTTCTTGCTGTGTACTTTT
CAAACAAGTATGATAGTTCTGTATCTGTATCTAAATAGCCGGTATNTGTT
AATCATATGATAATCTATCATACACTATATGTTTTTGTTTTATCTTACAT
GGAGATATACTATCAGTTTTTCCTATCCTTTACTTACTTGGCAGGTGCAT
GTATGTCGTAACACGAATTTTGTGTATTTCTTGGTCCTAACCTTATTTTC
TATCATTATATAAAATTATAAACAAAGCAATTTTTCACATATTTAAGTAC
AGCATCTGTTTTTCTTCAGTGTGGAAGCAGCTGTACCACTAACTGTGTGA
TGGCTGCAAGGGGACCATGTTACAAAAAAGATTACGTCATCACCTTTGAC
CGAAGCCAGGTCGATGTGGGTGGACATGACCATGACTACCTCCTGACCCT
CACTGTCAGGAACAAGGCCACTCTCAGCACAACAGAAACACTGAAGGTGA
GTACTGATGCCTTGCTTTTATATTACAGGGGAGTACAATGATGTGTGTCG
TCCATTCTTTGTATTCGACTCAGCGGGCTTGCCTGCTGTGAATTGATGAC
ACTTGGCAGAAAAGGACAAAATGTGTGTTGGTCACAACATCGGCAATAGC
TGCCTGTGTCTCAAGTGTATTCCACTGTTGCAATTCTAATCAAATCAAAT
CAAAATCGAAAGGGACATTAATTATAACAGTTATAATTACAGCCCCCGTC
CCAAATGACGACTGAAGTAGTTACTGCTGCCTATGAGAATAGCAGGATTA
GATTTGTAGCGACATATTCTCCTGTAGATCCAAAGTTATCCTGGTTGCCT
GGTTGGCATATTTCTTGGTTACACTTGGTTACACATACAGTGCTACGCTT
GCACTCACTTGATAAGTAGTTTGATACGCCCTACCGTGTTTGTTGAAACT
TTTGCCTAAGCCATCGGATACCAAGACATCGTCAGCTACAGTGTCTTCCG
CCTCGATATGCCGCTGATTTCCTGTTAAAGAAAGGAAAGACAACGTCTAA
GAGATAGAAACAAGCCCGTAGCACACCGCGGTGGGAGGGGGGGCGCGCTT
GTCCTAATCTATAACACGAAAGTAAACGTCTTATCTATCTAACAACCTTC
AAATGACTCTTAAAAGCACCACAAAACCTTTTCAGCTCTAGCATGTCACA
AATATGCACATGGGCGTCCAGGAACCTGAAAGGATTGACGTGTCAACCAA
GTTGAGATCTGCGAGAAAACCGATGATGATGAACTGGTGACCTCTGAACT
TGATAGACAACCTTTGACCTTATTCGGTGAACCTGATGACACCATTTATT
GTATTTATGTATCACCATATAGTTTTTAGATGTGTCGAGCGACAAGTTCC
ATATGTCCATAGGTCCCATATGTCACCGGAGGAATGATAGTGTAACGGGC
TCTTTAAAATCAGGGCACAGTGTATTCAAAGTTTCAAACCCATGTTAGAG
TAAGTTAGAGCTAGCTTCAACATGTTTTATAGCTCACATTTGTCTGCCTT
TTGTTTTGTTGTAGATATCAGTGGACACAT Coding sequence (CDS) from alignment at Sc0000014:2299075..2302654- >transcript:BL96931_cuf2 ID=transcript:BL96931_cuf2|Name=transcript:BL96931_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2076bp|location=Sequence derived from alignment at Sc0000014:2299075..2302654- (Branchiostoma lanceolatum)
AATACACAGCACAATTTAGGAATCAGTAAGGTGGACGGCGACACTGTCAA
GATATGGGTGAAAGCAAGAGACATTATGGGCAACGAGATCACTGACAGCG
TCACCGCGCACATCGATTCCTCGGGACCAGTCATCGAAAACCTGTGGCTT
GCAAGCGGAGAGGAAACCAACCTTGTCGTACACAACTCCGTGGATCTGTA
TGAAATGCAGATTCAGTTTGACGCATTTGACCAGCATAGCGGACTCCATG
ACATGACCTGGACACTGGCCGACGTTAAAACGTCAGCCACCATTGCAACA
GGAGTGGTAGCTGTGCAAACGTTAACCTGTGGAAGCAGCTGTACCACTAA
CTGTGTGATGGCTGCAAGGGGACCATGTTACAAAAAAGATTACGTCATCA
CCTTTGACCGAAGCCAGGTCGATGTGGGTGGACATGACCATGACTACCTC
CTGACCCTCACTGTCAGGAACAAGGCCACTCTCAGCACAACAGAAACACT
GAAGATATCAGTGGACACAAATACACAGCACAATTTAGGAATCAGTAAGG
TGGACGGCGACACTGTCAAGATATGGGTGAAAGCAAGAGACATTATGGGC
AACGAGATCACTGACAGCGTCACCGCGCACATCGATTCCTCGGGACCAGT
CATCGAAAACCTGTGGCTTGCAAGCGGAGAGGAAACCAACCTTGTCGTAC
ACAACTCCGTGGATCTGTATGAAATGCAGATTCAGTTTGACGCATTTGAC
CAGCATAGCGGACTCCATGACATGACCTGGACACTGGCCGACGTTAAAAC
GTCAGCCACCATTGCAACAGGAGTGGTAGCTGTGCAAACGTTAACCTGTG
GAAGCAGCTGTACCACTAACTGTGTGATGGCTGCAAGGGGACCATGTTAC
AAAAAAGATTACGTCATCACCTTTGACCGAAGCCAGGTCGATGTGGGTGG
ACATGACCATGACTACCTCCTGACCCTCACTGTCAGGAACAAGGCCACTC
TCAGCACAACAGAAACACTGAAGATATCAGTGGACACAAATACACAGCAC
AATTTAGGAATCAGTAAGGTGGACGGCGACACTGTCAAGATATGGGTGAA
AGCAAGAGACATTATGGGCAACGAGATCACTGACAGCGTCACCGCGCACA
TCGATTCCTCGGGACCAGTCATCGAAAACCTGTGGCTTGCAAGCGGAGAG
GAAACCAACCTTGTCGTACACAACTCCGTGGATCTGTATGAAATGCAGAT
TCAGTTTGACGCATTTGACCAGCATAGCGGACTCCATGACATGACCTGGA
CACTGGCCGACGTTAAAACGTCAGCCACCATTGCAACAGGAGTGGTAGCT
GTGCAAACGTTAACCTGTGGAAGCAGCTGTACCACTAACTGTGTGATGGC
TGCAAGGGGACCATGTTACAAAAAAGATTACGTCATCACCTTTGACCGAA
GCCAGGTCGATGTGGGTGGACATGACCATGACTACCTCCTGACCCTCACT
GTCAGGAACAAGGCCACTCTCAGCACAACAGAAACACTGAAGATATCAGT
GGACACAAATACACAGCACAATTTAGGAATCAGTAAGGTGGACGGCGACA
CTGTCAAGATATGGGTGAAAGCAAGAGACATTATGGGCAACGAGATCACT
GACAGCGTCACCGCGCACATCGATTCCTCGGGACCAGTCATCGAAAACCT
GTGGCTTGCAAGCGGAGAGGAAACCAACCTTGTCGTACACAACTCCGTGG
ATCTGTATGAAATGCAGATTCAGTTTGACGCATTTGACCAGCATAGCGGA
CTCCATGACATGACCTGGACACTGGCCGACGTTAAAACGTCAGCCACCAT
TGCAACAGGAGTGGTAGCTGTGCAAACGTTAACCTGTGGAAGCAGCTGTA
CCACTAACTGTGTGATGGCTGCAAGGGGACCATGTTACAAAAAAGATTAC
GTCATCACCTTTGACCGAAGCCAGGTCGATGTGGGTGGACATGACCATGA
CTACCTCCTGACCCTCACTGTCAGGAACAAGGCCACTCTCAGCACAACAG
AAACACTGAAGATATCAGTGGACACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000014 | genome | Sc0000014:2299075..2302654 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96931_cuf2 |
| Biotype | protein_coding |
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