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transcript:BL96928_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96928_cuf2
Unique Nametranscript:BL96928_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96928_cuf2

>transcript:BL96928_cuf2-protein ID=transcript:BL96928_cuf2-protein|Name=transcript:BL96928_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=434bp
DVNECDADPCHVNATCTNTDGSYTCTCKSGFRENGDNCEDIDECSFLGRC
PANSNCVNTIGSFRCDCDSGYTGPDCTEATTTPPQSTESSETTTTETVTR
TTTLNTFTGTVPTTTAAPTTPGPTAAPTTPGTTNEPTTPGTTEAPTTTEP
TPDIGWTNGQIVGNNSITYANGTTDYINSGWKVDSTIDEEISDAFAHTGH
QCWYYKSGTNNVNNPGPGDKTPFSPELSVKVGRSDGAYTGDADSFYVSFW
FKMAEDYSTRYGDGTRMMVVAGDPSGTTAASNHLEIDFPYRYRAKLSIRT
KESSPSYADCAQSKNCGDDFGGIYNTITDTLDPTTWHHVEMTLRSRPQDY
MDEWFYVIDGDTANPSQGGAFYKTQQYDEGRYLYTNRVSFIDISTRANLN
RNKGIYFDDINYKAYNSSNPSLIIDEYSTSFEPV
Run BLAST on NCBI

mRNA from alignment at Sc0000014:16861..18822+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96928_cuf2 ID=transcript:BL96928_cuf2|Name=transcript:BL96928_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1962bp|location=Sequence derived from alignment at Sc0000014:16861..18822+ (Branchiostoma lanceolatum)
AGACGTCAACGAGTGTGATGCTGATCCTTGTCACGTAAACGCGACCTGCA CCAACACTGACGGAAGTTACACCTGTACCTGCAAGTCAGGCTTCCGTGAG AATGGAGATAACTGTGAAGGTAACTTAGTTTATGAGTAGATCTTTCAAGA TTGACCTCAGCTGACACAGCGTTAGCATTGGATATCTAAAGTACAAGCGA CGCAGCAAGCAATACTTTGGATGTAAATGAAACATGTATAAAGACAACCA TGTTATGACAGGAATTGTCTACTCCATGTAGCAAATGGTGTGCAACTCTG CCTTGAATACCAGTACAATTGTATTTGTGTATAAGAGAATAACTGACTGA GAATGCATTTGTAACAGGATTGAACATTTTTTCTAAAGATGTTGAAAATT ATTTTACAGACATAGACGAGTGTTCCTTCCTCGGTCGGTGCCCAGCCAAC TCGAACTGCGTCAATACTATTGGCAGTTTCCGCTGCGATTGTGATTCCGG ATACACTGGTCCCGATTGTACAGGTAATACATGGCATGTTTCTTTCATTA CAGTAGGGATGGCTTAATCAAGGATCTCCCCTTTACCTTTACAAATCCCG CCATGATCAGGTGGTCATAATATGATGTGTGTATTACAGACAGTATCGTT ACGTGTCCAGTAACCTATGATCATATGAATCCGGCACAAATCTCATGACC TGTTGGTTGTACTTGTATTCAAGATACTTATGATGTAGTAACGTTCCTTC TATTTTTAAGACTGCTAACACCACGTCTGTATCCCAGATACAAAGTTATT ATGATCTCCCGAGCTTTAATCAATGCCATAACCAAACCGTGTTGTCATTT CTTAGAAGCTACTACCACGCCTCCGCAATCTACCGAAAGTTCCGAAACAA CAACCACTGAAACAGTGACAAGGACAACAACCTTGAACACCTTCACTGGT ACCGTGCCGACAACAACGGCGGCGCCAACAACACCTGGACCAACGGCGGC GCCAACAACACCAGGAACAACGAATGAACCAACAACACCAGGGACAACGG AAGCGCCAACAACCACAGAGCCAACACCAGACATCGGCTGGACAAATGGG CAAATCGTTGGAAACAATAGCATCACCTACGCCAACGGCACTACCGACTA TATAAACAGCGGCTGGAAAGTAGATTCCACAATTGATGAAGAAATCAGTG ACGCCTTCGCTCACACAGGACATCAGTGTTGGTACTACAAGAGTGGTACA AACAACGTTAATAATCCCGGGCCCGGAGACAAAACACCCTTCTCTCCCGA ACTCAGCGTCAAAGTCGGACGGTCGGACGGCGCCTACACTGGCGACGCGG ACTCGTTCTACGTGTCCTTCTGGTTCAAGATGGCGGAGGATTACAGCACC AGATACGGAGACGGGACTCGCATGATGGTCGTAGCAGGAGACCCAAGTGG TACCACCGCCGCGTCTAACCACCTAGAGATCGATTTTCCCTACCGTTACC GTGCCAAGTTATCGATCCGTACCAAGGAAAGCTCTCCTAGTTACGCCGAC TGCGCACAGAGTAAGAATTGTGGCGATGACTTCGGCGGCATCTACAACAC GATTACCGATACCCTCGACCCCACCACCTGGCACCATGTAGAGATGACCC TCCGCTCACGGCCTCAGGACTACATGGACGAATGGTTCTATGTGATCGAC GGGGACACGGCCAACCCATCGCAAGGTGGCGCTTTTTACAAAACCCAGCA GTACGACGAAGGTCGCTACTTGTACACCAATAGGGTGTCATTCATTGACA TCAGCACTAGGGCCAATCTCAACAGAAACAAAGGAATCTACTTTGATGAC ATCAACTACAAAGCCTACAATTCCTCCAATCCCAGCTTGATTATTGACGA ATACAGTACGTCTTTTGAACCAGTGTAGAAAATCGAACTGCAGTTATTAG TAGATTGGAAGA

Coding sequence (CDS) from alignment at Sc0000014:16861..18822+

>transcript:BL96928_cuf2 ID=transcript:BL96928_cuf2|Name=transcript:BL96928_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3915bp|location=Sequence derived from alignment at Sc0000014:16861..18822+ (Branchiostoma lanceolatum)
GACGTCAACGAGTGTGATGCTGATCCTTGTCACGTAAACGCGACCTGCAC
CAACACTGACGGAAGTTACACCTGTACCTGCAAGTCAGGCTTCCGTGAGA
ATGGAGATAACTGTGAAGACATAGACGAGTGTTCCTTCCTCGGTCGGTGC
CCAGCCAACTCGAACTGCGTCAATACTATTGGCAGTTTCCGCTGCGATTG
TGATTCCGGATACACTGGTCCCGATTGTACAGAAGCTACTACCACGCCTC
CGCAATCTACCGAAAGTTCCGAAACAACAACCACTGAAACAGTGACAAGG
ACAACAACCTTGAACACCTTCACTGGTACCGTGCCGACAACAACGGCGGC
GCCAACAACACCTGGACCAACGGCGGCGCCAACAACACCAGGAACAACGA
ATGAACCAACAACACCAGGGACAACGGAAGCGCCAACAACCACAGAGCCA
ACACCAGACATCGGCTGGACAAATGGGCAAATCGTTGGAAACAATAGCAT
CACCTACGCCAACGGCACTACCGACTATATAAACAGCGGCTGGAAAGTAG
ATTCCACAATTGATGAAGAAATCAGTGACGCCTTCGCTCACACAGGACAT
CAGTGTTGGTACTACAAGAGTGGTACAAACAACGTTAATAATCCCGGGCC
CGGAGACAAAACACCCTTCTCTCCCGAACTCAGCGTCAAAGTCGGACGGT
CGGACGGCGCCTACACTGGCGACGCGGACTCGTTCTACGTGTCCTTCTGG
TTCAAGATGGCGGAGGATTACAGCACCAGATACGGAGACGGGACTCGCAT
GATGGTCGTAGCAGGAGACCCAAGTGGTACCACCGCCGCGTCTAACCACC
TAGAGATCGATTTTCCCTACCGTTACCGTGCCAAGTTATCGATCCGTACC
AAGGAAAGCTCTCCTAGTTACGCCGACTGCGCACAGAGTAAGAATTGTGG
CGATGACTTCGGCGGCATCTACAACACGATTACCGATACCCTCGACCCCA
CCACCTGGCACCATGTAGAGATGACCCTCCGCTCACGGCCTCAGGACTAC
ATGGACGAATGGTTCTATGTGATCGACGGGGACACGGCCAACCCATCGCA
AGGTGGCGCTTTTTACAAAACCCAGCAGTACGACGAAGGTCGCTACTTGT
ACACCAATAGGGTGTCATTCATTGACATCAGCACTAGGGCCAATCTCAAC
AGAAACAAAGGAATCTACTTTGATGACATCAACTACAAAGCCTACAATTC
CTCCAATCCCAGCTTGATTATTGACGAATACAGTACGTCTTTTGAACCAG
TGTAGGACGTCAACGAGTGTGATGCTGATCCTTGTCACGTAAACGCGACC
TGCACCAACACTGACGGAAGTTACACCTGTACCTGCAAGTCAGGCTTCCG
TGAGAATGGAGATAACTGTGAAGACATAGACGAGTGTTCCTTCCTCGGTC
GGTGCCCAGCCAACTCGAACTGCGTCAATACTATTGGCAGTTTCCGCTGC
GATTGTGATTCCGGATACACTGGTCCCGATTGTACAGAAGCTACTACCAC
GCCTCCGCAATCTACCGAAAGTTCCGAAACAACAACCACTGAAACAGTGA
CAAGGACAACAACCTTGAACACCTTCACTGGTACCGTGCCGACAACAACG
GCGGCGCCAACAACACCTGGACCAACGGCGGCGCCAACAACACCAGGAAC
AACGAATGAACCAACAACACCAGGGACAACGGAAGCGCCAACAACCACAG
AGCCAACACCAGACATCGGCTGGACAAATGGGCAAATCGTTGGAAACAAT
AGCATCACCTACGCCAACGGCACTACCGACTATATAAACAGCGGCTGGAA
AGTAGATTCCACAATTGATGAAGAAATCAGTGACGCCTTCGCTCACACAG
GACATCAGTGTTGGTACTACAAGAGTGGTACAAACAACGTTAATAATCCC
GGGCCCGGAGACAAAACACCCTTCTCTCCCGAACTCAGCGTCAAAGTCGG
ACGGTCGGACGGCGCCTACACTGGCGACGCGGACTCGTTCTACGTGTCCT
TCTGGTTCAAGATGGCGGAGGATTACAGCACCAGATACGGAGACGGGACT
CGCATGATGGTCGTAGCAGGAGACCCAAGTGGTACCACCGCCGCGTCTAA
CCACCTAGAGATCGATTTTCCCTACCGTTACCGTGCCAAGTTATCGATCC
GTACCAAGGAAAGCTCTCCTAGTTACGCCGACTGCGCACAGAGTAAGAAT
TGTGGCGATGACTTCGGCGGCATCTACAACACGATTACCGATACCCTCGA
CCCCACCACCTGGCACCATGTAGAGATGACCCTCCGCTCACGGCCTCAGG
ACTACATGGACGAATGGTTCTATGTGATCGACGGGGACACGGCCAACCCA
TCGCAAGGTGGCGCTTTTTACAAAACCCAGCAGTACGACGAAGGTCGCTA
CTTGTACACCAATAGGGTGTCATTCATTGACATCAGCACTAGGGCCAATC
TCAACAGAAACAAAGGAATCTACTTTGATGACATCAACTACAAAGCCTAC
AATTCCTCCAATCCCAGCTTGATTATTGACGAATACAGTACGTCTTTTGA
ACCAGTGTAGGACGTCAACGAGTGTGATGCTGATCCTTGTCACGTAAACG
CGACCTGCACCAACACTGACGGAAGTTACACCTGTACCTGCAAGTCAGGC
TTCCGTGAGAATGGAGATAACTGTGAAGACATAGACGAGTGTTCCTTCCT
CGGTCGGTGCCCAGCCAACTCGAACTGCGTCAATACTATTGGCAGTTTCC
GCTGCGATTGTGATTCCGGATACACTGGTCCCGATTGTACAGAAGCTACT
ACCACGCCTCCGCAATCTACCGAAAGTTCCGAAACAACAACCACTGAAAC
AGTGACAAGGACAACAACCTTGAACACCTTCACTGGTACCGTGCCGACAA
CAACGGCGGCGCCAACAACACCTGGACCAACGGCGGCGCCAACAACACCA
GGAACAACGAATGAACCAACAACACCAGGGACAACGGAAGCGCCAACAAC
CACAGAGCCAACACCAGACATCGGCTGGACAAATGGGCAAATCGTTGGAA
ACAATAGCATCACCTACGCCAACGGCACTACCGACTATATAAACAGCGGC
TGGAAAGTAGATTCCACAATTGATGAAGAAATCAGTGACGCCTTCGCTCA
CACAGGACATCAGTGTTGGTACTACAAGAGTGGTACAAACAACGTTAATA
ATCCCGGGCCCGGAGACAAAACACCCTTCTCTCCCGAACTCAGCGTCAAA
GTCGGACGGTCGGACGGCGCCTACACTGGCGACGCGGACTCGTTCTACGT
GTCCTTCTGGTTCAAGATGGCGGAGGATTACAGCACCAGATACGGAGACG
GGACTCGCATGATGGTCGTAGCAGGAGACCCAAGTGGTACCACCGCCGCG
TCTAACCACCTAGAGATCGATTTTCCCTACCGTTACCGTGCCAAGTTATC
GATCCGTACCAAGGAAAGCTCTCCTAGTTACGCCGACTGCGCACAGAGTA
AGAATTGTGGCGATGACTTCGGCGGCATCTACAACACGATTACCGATACC
CTCGACCCCACCACCTGGCACCATGTAGAGATGACCCTCCGCTCACGGCC
TCAGGACTACATGGACGAATGGTTCTATGTGATCGACGGGGACACGGCCA
ACCCATCGCAAGGTGGCGCTTTTTACAAAACCCAGCAGTACGACGAAGGT
CGCTACTTGTACACCAATAGGGTGTCATTCATTGACATCAGCACTAGGGC
CAATCTCAACAGAAACAAAGGAATCTACTTTGATGACATCAACTACAAAG
CCTACAATTCCTCCAATCCCAGCTTGATTATTGACGAATACAGTACGTCT
TTTGAACCAGTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96928gene:BL96928Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96928_cuf2transcript:BL96928_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96928_cuf2-E1BL96928_cuf2-E1-1564476830-118088Branchiostoma lanceolatumexon
BL96928_cuf2-E2BL96928_cuf2-E2-1564476830-118090Branchiostoma lanceolatumexon
BL96928_cuf2-E3BL96928_cuf2-E3-1564476830-118093Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:16861..18822 +
Properties
Property NameValue
Transcript idBL96928_cuf2
Biotypeprotein_coding