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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96927_cuf1 >transcript:BL96927_cuf1-protein ID=transcript:BL96927_cuf1-protein|Name=transcript:BL96927_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=193bp
QQYEAKRKKEKSRQNSMACYQVVVLVFLFLITAGIAYLVYNGTDTTSLLR
SDQFGSLSATQSSCLPNPCLYGGVCEEGKDGYTCRCPAGREGDNCETSAA
CTGNPCKNGNCTEDPTGYYCTCEAGWTGPRCETELFCASQPCQHNGVCLD
GANGFYCFCEEGWVGKQCDTDVDECKSNPCGTNQVCINQPGNY Run BLAST on NCBI mRNA from alignment at Sc0000014:11803..16355+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96927_cuf1 ID=transcript:BL96927_cuf1|Name=transcript:BL96927_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4553bp|location=Sequence derived from alignment at Sc0000014:11803..16355+ (Branchiostoma lanceolatum)
CACAACAGTATGAGGCCAAGCGAAAGAAGGAGAAATCGAGGCAGAACTCA
ATGGCGTGCTACCAGGTGGTCGTTCTGGTCTTCCTTTTCCTCATCACCGC
TGGAATAGCATACCTGGGTAAGTCTGAACATTTCGACCTAAATGAACCTT
TCTGGGGCCTCTCTTGTTTTTGCTTTTTATCAATGATCTGCCTCTCGCGG
TTAGCAACAAATTAGCCCTATATGCAGACGACTCAAAATGTTTCAAAGAA
ATAATAACTGTTATGGATTGTGTGTCTCTTCAGAGGGACATTGAGTGTAT
GTATGATTGGGGGAACACATGGTCGATGATTTTCAACCCCGATAAATGTA
AAATTCTCAGATTTAGTAGGCAAAGAAATCCCGTCAAGTTCACCTACAAG
ATGGTTGACACCGTCCTAGAAACGGTTTCTGAATTCACGGATTTAGGGGT
ATTGGCTGACAGGCATTTGACATTCAATTACCATGTACAAAATATAATAT
CAAGAGCGAATTCGGCCCTGGGCTTCATAAAGCGATCAGTGGGTTTTCAC
GCCCCTCCCAACGTTAAGAAAATGTTATACCTCACCCTCGTCAGCAGTAA
ACTTGAGTACTGTTCCATAGTATGGTCTCCCTACACCCACAATCTTATCT
CCTCAATCGAAAAAATTCAAAGACGGGCTTCGAAGTATATACTCAATGAC
TACTCCACTAACTACAGAATTAGGCTAATGCAATGCTCACTTTTACCACT
CTCATACAGACGTGAAATTCTAGACCTCTGTTTCTTATTTAGATGCTTCC
TAGGATACTACGACATTGATATTAACAAATATATCAAATCGCCCCATCCA
TCACTCAGATCAACTTCTCAGTATAAGCTCCAACCAGAAAAGTGTCAAAC
CACAACATTCAAAAATTTCTTTTTTCAAAGGATTGTACATATATGGAACC
GATTACCAGTTACCACCAGATCCCTTAGAATATGCCCGAACGTCTCCTTT
GTAACCTTTAAGAAGTCCATCCTCAGTCACTACCACTACCTTCTATGCGA
TAAATTTGATCCCGAAAACATATACACCTGGTACACACCCTGTTCCCAGA
CTCTAACTTAGTAATTATTATCATTTTTATATCATCTGTACTATTTGTGT
TATCTTTATTTCTATTTATTGTTTCTATTTATGCCAATATTCGACATTAT
TCTGTGTTTTTTGTGTACAATTGATTTATTCAATAGTGGTCACTTTTTAT
CATTTATCCTTGTGTAATTATTATTTGTTTCTCTCGTATATATTAACCAT
GTTTTTTATGTTGGACAGGGGTCTAGTGAAAGAACTTAGTTCTGTTACCC
CTGTCCAGTTACCTCTGTAACGAAGTTTTAATAAATAAATAAATAAATAA
AAACGTTAGGAGAAATGAAATATTATAGTTATCGCAAGTGCAATGTGAAG
CGATTAGGATAACCATAACTATGACCAGCCAGGTTCAAATCGTACGTTCA
AAAGCATTCTCGGAATCAGCAACGTTTGAAACACAAAAGTTTGCTGATTT
CCAAAATGCATTCGAGGAAACCGGACGTGAACGTTGTCAATGTTATCTAT
GTTGTCTTAAAAGTATTCGAAGCAATGTTATCCTATAAAAGAGGAATAGT
ATAAGTCAGATGTCTTCTTAAACCCTGTGTGTACTGGACTATAACCAAAT
GTGAGCGTTGAACTACATGTACAACAGAAGTGATAGTTATTTGTCATGCA
AAGAATAACTTACTTTTCAATTCTCCGTGGAAGCTATAAAGTTTCATTCA
CCGGAAGCAAAAAATAGTCTAAGTCGTCTTTCATAGAATGATTTTGTACT
TTGATGTTTCTTTTTGCAGTGTACAATGGAACAGACACAACATCTTTGCT
CCGCAGTGACCAGTTTGGTGAGTGTTTCCTAATGTTTTTCACACGTTTGC
CACTAAGTGCTAGTACCATTGACTTACTCCCTGCTTCGTGTGTGTGCAAC
AAAAGGAAATAAATGGTCTCAATATCTGTTTGACCAGAGACACTATTAAT
CAAATTTACCTGAAAAACAATCTGTTTGACCAGAGACACTATTAATCAAA
TTTACCTGAAAAACAATTTTAAAACTCACAGATGAGACCTTGGAATCGCC
CATAGGTCACTGACTACACAAATTGAGGACATAAGTACATTTTACAATTG
CTTACCTGAGCATGTTGTTATCGCACACTAGAAGACTGTACGTGTGCAAA
TATTTGTCATAAAAGACAAGTTAGCAGTCTGGCCCCTTTGTCCAATACAA
TAACACTGTACTGTGGGAAAAGCAGAATTCGTCCAACTTTCACGATATAT
AGATAAGCTATCAGCAAAAACACAAGCTGATATCATGTTTTGCGTTTCTG
TCCGTGAGACCAATCATCAGTATTCTATCAGCCACCTTCAGGTTAGCCCG
AGTGATGACATCAGGGAAAACAGCTATTCATCCAATATGCTGACGTTTAA
AAAACAAACTTTATTTGAGTTGGTTTGAAGTTGTTGATACGTCATCAGTC
CTTGCACTTAAAGCTCGCGATTGATTAATTACCCGTTCAAAAGATAACTG
ACTATTTGTTCAAAGTCAACTATACAGCCAAAGTCCCTTTTTGATATTTG
CTAACTTCAATACTTGAAAAATGGAGGAACTATGTCTATTTTACTTTGAT
GTTTGATGTTCTTGTTTGTTACTCTATTTCAAACCATGTCCTACTCGATG
ATTTATCATTTATTCAACCTGTTTCTCTTTAATTATTTTGTACCTTGATT
TGAGGCTGACTTATGTTTTTCTTTGTTCAAGGGCTTCAATGGAAATCAGT
TGCTTTTTAAACAGAAGGGACCACCCTTAAGGTTTTAAAAAACACAAATA
AAAATGTAAACTTGTTCTTTCTTAACAGGCTCCTTGTCGGCAACTCAAAG
CAGCTGTTTGCCTAATCCGTGTCTCTATGGCGGTGTGTGTGAGGAGGGAA
AGGACGGCTACACCTGCAGGTGTCCCGCAGGACGGGAGGGGGACAACTGC
GAAACAAGTATGTTTAAACATATCGCTTGACAATTACGTAACTGTGCATA
AATGTTGCTGCTAGTAAAGGACGTGCTATGTCTCTGAAGACTTTGGGCAA
ATCAAAAAATTATTCTCATTGCATCGTAATAAATCTCGTTGTGTCTAACC
TCTTTTCACTATATTTGGACACAGAATCAACAAGAGTTCGGAGACCTCAT
ATCTCCATGAACAATTCTATTTATGCAAATTACTTACACATTTACATAAT
ATATGCTTAATCATAAACACCTTTACCTTACTTACACATGTTGCATATTG
ACAGTCCTATAATTTTACAATTAGATGAATTTGGGTGTTTTCGCATTAAT
TATGCAAATTAGGAATCTATTTAGACAGAAAGACAGACACACACCCAAAA
ACTATATCTCCATTTTTCATGGAGATAACATGGAGATAATAAAAGCACTA
TACTACATATATCTATGATGTCAAGAGAATGTAGGAAAAGATAAATAATG
CTTTAATTCTAGAGAAAATTCTTTCAAGCATGTCTGTTGTTGCTGTTCCG
CTAGGTGCTGCCTGCACAGGAAATCCGTGTAAGAACGGTAACTGTACTGA
AGACCCCACAGGCTACTACTGCACCTGTGAGGCAGGTTGGACAGGACCGA
GATGCGAAACAGGTGAGTGCTGACGGATAAAACTATGTTTGAAATGTAAA
CCATGATCATGAAATTAAGGCCATAAACTAATAAAATACTTAATTAGAAT
GGTTACAAGAATATTCCTCAAACAGTGACTTAAAAGGGTAGCGAAATACG
CACCTCCAAATTTTCGACGTCTTCTGTACGTCTTGTTCACGGAGTGACCT
AGTCTCGCGAGAACACGAGACTAGGCCGAAACTTGTGAAGATCGTCCTGC
CTCTGTCCTGCCTCCCCCGCCTCCTTGTTGTCACTGTTTGAGGAATATTC
TTGTAACTGTTATCATACGTGACTGATGAACCTCTTCAATTTTAATTAGA
ATGTAAAACACTTAATTAGAATGTTTGGTATATTAGAAAAACGTTTTAAA
AGAAAATATTTGTAAAGAGTACATGAGTGACTGTTTTAAACACTTGTCTC
TACAGAGTTGTTTTGCGCAAGCCAGCCTTGCCAGCACAACGGAGTTTGCC
TGGACGGTGCCAACGGCTTCTACTGCTTCTGTGAAGAAGGTTGGGTCGGC
AAGCAGTGCGACACAGGTAAAACACATAACTTTCTGCTGCATTATAAAGA
TAAAATTGGTAACATTACAGTGGTAATATTACCGATTTTATCTTTATACG
AACCAACGTCAGATTGAAGTTAGTTTTTTTTTTGTATGCAAACTGCAAAC
TTGACCATTAAAGGGCATAGCCTATTCATGTATGTCACTTATGATAAACA
AAGTGGCTTAGATTTTATATGTGTTTTTCTCAGACGTTGACGAGTGTAAA
AGCAACCCGTGTGGCACAAATCAAGTATGTATCAACCAGCCCGGCAACTA
CAC Coding sequence (CDS) from alignment at Sc0000014:11803..16355+ >transcript:BL96927_cuf1 ID=transcript:BL96927_cuf1|Name=transcript:BL96927_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3474bp|location=Sequence derived from alignment at Sc0000014:11803..16355+ (Branchiostoma lanceolatum)
CAACAGTATGAGGCCAAGCGAAAGAAGGAGAAATCGAGGCAGAACTCAAT
GGCGTGCTACCAGGTGGTCGTTCTGGTCTTCCTTTTCCTCATCACCGCTG
GAATAGCATACCTGGTGTACAATGGAACAGACACAACATCTTTGCTCCGC
AGTGACCAGTTTGGCTCCTTGTCGGCAACTCAAAGCAGCTGTTTGCCTAA
TCCGTGTCTCTATGGCGGTGTGTGTGAGGAGGGAAAGGACGGCTACACCT
GCAGGTGTCCCGCAGGACGGGAGGGGGACAACTGCGAAACAAGTGCTGCC
TGCACAGGAAATCCGTGTAAGAACGGTAACTGTACTGAAGACCCCACAGG
CTACTACTGCACCTGTGAGGCAGGTTGGACAGGACCGAGATGCGAAACAG
AGTTGTTTTGCGCAAGCCAGCCTTGCCAGCACAACGGAGTTTGCCTGGAC
GGTGCCAACGGCTTCTACTGCTTCTGTGAAGAAGGTTGGGTCGGCAAGCA
GTGCGACACAGACGTTGACGAGTGTAAAAGCAACCCGTGTGGCACAAATC
AAGTATGTATCAACCAGCCCGGCAACTACCAACAGTATGAGGCCAAGCGA
AAGAAGGAGAAATCGAGGCAGAACTCAATGGCGTGCTACCAGGTGGTCGT
TCTGGTCTTCCTTTTCCTCATCACCGCTGGAATAGCATACCTGGTGTACA
ATGGAACAGACACAACATCTTTGCTCCGCAGTGACCAGTTTGGCTCCTTG
TCGGCAACTCAAAGCAGCTGTTTGCCTAATCCGTGTCTCTATGGCGGTGT
GTGTGAGGAGGGAAAGGACGGCTACACCTGCAGGTGTCCCGCAGGACGGG
AGGGGGACAACTGCGAAACAAGTGCTGCCTGCACAGGAAATCCGTGTAAG
AACGGTAACTGTACTGAAGACCCCACAGGCTACTACTGCACCTGTGAGGC
AGGTTGGACAGGACCGAGATGCGAAACAGAGTTGTTTTGCGCAAGCCAGC
CTTGCCAGCACAACGGAGTTTGCCTGGACGGTGCCAACGGCTTCTACTGC
TTCTGTGAAGAAGGTTGGGTCGGCAAGCAGTGCGACACAGACGTTGACGA
GTGTAAAAGCAACCCGTGTGGCACAAATCAAGTATGTATCAACCAGCCCG
GCAACTACCAACAGTATGAGGCCAAGCGAAAGAAGGAGAAATCGAGGCAG
AACTCAATGGCGTGCTACCAGGTGGTCGTTCTGGTCTTCCTTTTCCTCAT
CACCGCTGGAATAGCATACCTGGTGTACAATGGAACAGACACAACATCTT
TGCTCCGCAGTGACCAGTTTGGCTCCTTGTCGGCAACTCAAAGCAGCTGT
TTGCCTAATCCGTGTCTCTATGGCGGTGTGTGTGAGGAGGGAAAGGACGG
CTACACCTGCAGGTGTCCCGCAGGACGGGAGGGGGACAACTGCGAAACAA
GTGCTGCCTGCACAGGAAATCCGTGTAAGAACGGTAACTGTACTGAAGAC
CCCACAGGCTACTACTGCACCTGTGAGGCAGGTTGGACAGGACCGAGATG
CGAAACAGAGTTGTTTTGCGCAAGCCAGCCTTGCCAGCACAACGGAGTTT
GCCTGGACGGTGCCAACGGCTTCTACTGCTTCTGTGAAGAAGGTTGGGTC
GGCAAGCAGTGCGACACAGACGTTGACGAGTGTAAAAGCAACCCGTGTGG
CACAAATCAAGTATGTATCAACCAGCCCGGCAACTACCAACAGTATGAGG
CCAAGCGAAAGAAGGAGAAATCGAGGCAGAACTCAATGGCGTGCTACCAG
GTGGTCGTTCTGGTCTTCCTTTTCCTCATCACCGCTGGAATAGCATACCT
GGTGTACAATGGAACAGACACAACATCTTTGCTCCGCAGTGACCAGTTTG
GCTCCTTGTCGGCAACTCAAAGCAGCTGTTTGCCTAATCCGTGTCTCTAT
GGCGGTGTGTGTGAGGAGGGAAAGGACGGCTACACCTGCAGGTGTCCCGC
AGGACGGGAGGGGGACAACTGCGAAACAAGTGCTGCCTGCACAGGAAATC
CGTGTAAGAACGGTAACTGTACTGAAGACCCCACAGGCTACTACTGCACC
TGTGAGGCAGGTTGGACAGGACCGAGATGCGAAACAGAGTTGTTTTGCGC
AAGCCAGCCTTGCCAGCACAACGGAGTTTGCCTGGACGGTGCCAACGGCT
TCTACTGCTTCTGTGAAGAAGGTTGGGTCGGCAAGCAGTGCGACACAGAC
GTTGACGAGTGTAAAAGCAACCCGTGTGGCACAAATCAAGTATGTATCAA
CCAGCCCGGCAACTACCAACAGTATGAGGCCAAGCGAAAGAAGGAGAAAT
CGAGGCAGAACTCAATGGCGTGCTACCAGGTGGTCGTTCTGGTCTTCCTT
TTCCTCATCACCGCTGGAATAGCATACCTGGTGTACAATGGAACAGACAC
AACATCTTTGCTCCGCAGTGACCAGTTTGGCTCCTTGTCGGCAACTCAAA
GCAGCTGTTTGCCTAATCCGTGTCTCTATGGCGGTGTGTGTGAGGAGGGA
AAGGACGGCTACACCTGCAGGTGTCCCGCAGGACGGGAGGGGGACAACTG
CGAAACAAGTGCTGCCTGCACAGGAAATCCGTGTAAGAACGGTAACTGTA
CTGAAGACCCCACAGGCTACTACTGCACCTGTGAGGCAGGTTGGACAGGA
CCGAGATGCGAAACAGAGTTGTTTTGCGCAAGCCAGCCTTGCCAGCACAA
CGGAGTTTGCCTGGACGGTGCCAACGGCTTCTACTGCTTCTGTGAAGAAG
GTTGGGTCGGCAAGCAGTGCGACACAGACGTTGACGAGTGTAAAAGCAAC
CCGTGTGGCACAAATCAAGTATGTATCAACCAGCCCGGCAACTACCAACA
GTATGAGGCCAAGCGAAAGAAGGAGAAATCGAGGCAGAACTCAATGGCGT
GCTACCAGGTGGTCGTTCTGGTCTTCCTTTTCCTCATCACCGCTGGAATA
GCATACCTGGTGTACAATGGAACAGACACAACATCTTTGCTCCGCAGTGA
CCAGTTTGGCTCCTTGTCGGCAACTCAAAGCAGCTGTTTGCCTAATCCGT
GTCTCTATGGCGGTGTGTGTGAGGAGGGAAAGGACGGCTACACCTGCAGG
TGTCCCGCAGGACGGGAGGGGGACAACTGCGAAACAAGTGCTGCCTGCAC
AGGAAATCCGTGTAAGAACGGTAACTGTACTGAAGACCCCACAGGCTACT
ACTGCACCTGTGAGGCAGGTTGGACAGGACCGAGATGCGAAACAGAGTTG
TTTTGCGCAAGCCAGCCTTGCCAGCACAACGGAGTTTGCCTGGACGGTGC
CAACGGCTTCTACTGCTTCTGTGAAGAAGGTTGGGTCGGCAAGCAGTGCG
ACACAGACGTTGACGAGTGTAAAAGCAACCCGTGTGGCACAAATCAAGTA
TGTATCAACCAGCCCGGCAACTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000014 | genome | Sc0000014:11803..16355 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96927_cuf1 |
| Biotype | protein_coding |
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