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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96920_cuf1 >transcript:BL96920_cuf1-protein ID=transcript:BL96920_cuf1-protein|Name=transcript:BL96920_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=188bp
MLRFHHVGANGPCVSAQPPNCAAIEAGALNLPPSDSYYMFVKVTNPSSLS
VIGTSSPYRIKDKIPTDGIVFDIAPDVDDPGSHDYEDIDAQTDTGVLSAR
WFGFSDDPAAVTYEVAVGTSSGAQDVRPFTAASGTAVSITGLTLQYFQTY
FITVRARNGAGTVTVSSDGVTVLEHDGRVGGMMVKDGP Run BLAST on NCBI mRNA from alignment at Sc0000014:2163303..2165902+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96920_cuf1 ID=transcript:BL96920_cuf1|Name=transcript:BL96920_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2600bp|location=Sequence derived from alignment at Sc0000014:2163303..2165902+ (Branchiostoma lanceolatum)
CTAACAGAGACATCATCTAAGAATATGTTTTTAACTTCTATTGCAGCAAT
GTTCCTCAAGTGAGCAACATCGATGACTACGCCCCGAGACGCGATCTCGT
GACAAACACCACTCTCTCCAACCAATACTGCACTGCTTACTCAGGAGCAC
CAACGACCAGCTACCTTTCGGCGGACCGCAACGTAAGTGACTTTCGAGTA
GATTTTCGAAAGGACTCTGCGGACATGACAATGATGATAATAAAGAACTA
TTCTTGAAATCAAATCATCAGTGGTTTCCCGAAGTCACAATTACGACTGG
CGGTAGAAAGCAATGAACGTACTCATGTTACTGTCTTGCTGTTGGTCTTT
CTCCTGACCCCTCAGTCAGTTCGGTACATGGATCTCCGTCTAGTTATTGC
GCTGAACGTACAAGGTCATGACAAGGGCTTGGAGTATAGTGAGTTTTTGT
TTCTGGTGTCGAAAATGGTAGCACATGTAGATACGAGTACATCAACATCT
GTTATGAGTATATATCAGTGAAATGTGTTGGGCGAAAGAACTTTCTCTAC
TAATAGAACGAGAACTAAACTTGACTTGTTTTGGTACCACAGCTGTTTGC
TTCCTGGGACGGTGAGGATGAGGGCGGGATTTACGACTTCTCGGTGGGGC
TGAGCAGCACCAGCAGTACAAGCAGCCCTGACATCATGGCCTTCACCTCC
ACCACCGCCATCCCGGAGCTCAGGTTCTCCCACCCACACATCAGCCAGAA
CTCTCTATTCCACCTCGTTATCAAGGCTGAAGATAGGGCGGGACGAACAA
CCACCAAAGTAAGCCGTCTATACGTATTGTGGTATAATCAAACAAACATC
ACAACCCCTACTCCATGCTAGTACAGCCCTCGCCTACATTTATATTACGT
AATTTGATGCACTAAACAAGTCCTGTTAGACTCCAACCTTTTTTCTTTCC
AACAGTCACTCTCCATGAGTATGTAGCATAAACCAGTTTAATGTATATCA
ACAGGTCTAGTTCAAGATAAGGAGACCATAAGATGGTGTCAAAAGTGGGA
TTCAGCTTAAGTTTTGTATTTATAGCTTGATCCATTAAGACACTTATGAG
GTCATGCATTTTCGTGAAAATGAAAGATCTGTTGTGAACCTCGTTCTCTT
TTTCTTGCAGGCTGTGGGTCCAATCATCGTGGACGTAACTCCACCACAGT
TTACGGGACGAATCAGACTCGCTAAGCAAGGGAATTTTTTCGTTGGGCGT
TGGACAGCGAGCGACTTCTTTGATGACGAAAGCCAGGACCCTTTGCAGTA
TGAATTTGCTATTGGTAAGCAACGATATGAAATACTTTCAGAATTGAGAC
AAGTTAAGAAATATACGTATACATCTTCAACGACACCATACCATACCGAT
TCCGTTGAACTATATCTATGAAGACTAATCATGTGTCTTTTATCCAGGAC
GTCACCAAAGCTCCACTGCCATGCTGCGTTTCCATCATGTTGGAGCTAAC
GGACCCTGTGTGAGCGCTCAACCCCCGAACTGTGCAGCGATTGAAGCAGG
AGCATTAAACCTCCCTCCAAGTGACAGTTACTACATGTTTGTCAAAGTGA
CAAACCCGTCAAGCTTGTCCGTTATTGGCACCTCAAGTCCTTATAGAATA
AAAGACAAAATACCCACCGACGGTATCGTTTTTGACATTGCGCCGGATGT
GGACGACCCAGGAAGTCATGTAAGTTGTTGTTATATCTATGATCATTATA
GGATACGCTTCAAGTGTATCGTCTACTCTGCTATTTGACTGTTTTGTGTC
CTCTTGGTTTGTCCACTTTAGCTTTAGACAATGTGCTTGAATCTCGTCCT
TTTTGGGCCCAGCGTAATATTTGATAAGCAAGTGACCATCATATGCCACC
ATACAATGCCACTTCAAAATATCTACCACAACAAAAGACATTTCTGTTTC
ATCCATAAGGATTATGAAGACATCGACGCCCAAACAGACACCGGAGTGTT
ATCTGCACGCTGGTTCGGCTTCAGTGATGATCCAGCGGCAGTTACCTATG
AGGTGGCAGTGGGGACTTCTTCTGGTGCTCAGGACGTCCGACCCTTTACT
GCTGCAAGCGGTACAGCCGTCTCCATCACCGGCCTTACTCTTCAGTACTT
CCAGGTTTGTGCCTCAATATTATTCTCAGTCATTCTCATCCCTCGAATTC
AAGTCGACGATCGATTCGGTTGTTCGAAAAAAAAGCTGAGACAGTAACAT
AATGTCGTTGAAATTGGGAATGACAGAGCTACATGATCAACCATGGGTAG
GACCTTATTCCACCTAATGGATAGCGTTGGGCAATAAATGACCGACCAAT
AATAAGTTCCCATTGAAAGCTCATTGGAAGACATGTAACGTTTTCCTCGC
ACCTGTAGCCATGAGATACTGATCGGTATACTAGTCGATACAAACTGTTG
CAACGTTTTGTTGTTCTGAAAATTTCCAGACCTACTTCATCACCGTAAGG
GCAAGGAATGGCGCAGGGACGGTCACAGTCAGTTCAGACGGGGTCACCGT
TCTAGAGCACGACGGACGGGTAGGAGGCATGATGGTAAAAGATGGACCAG
Coding sequence (CDS) from alignment at Sc0000014:2163303..2165902+ >transcript:BL96920_cuf1 ID=transcript:BL96920_cuf1|Name=transcript:BL96920_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1692bp|location=Sequence derived from alignment at Sc0000014:2163303..2165902+ (Branchiostoma lanceolatum)
ATGCTGCGTTTCCATCATGTTGGAGCTAACGGACCCTGTGTGAGCGCTCA
ACCCCCGAACTGTGCAGCGATTGAAGCAGGAGCATTAAACCTCCCTCCAA
GTGACAGTTACTACATGTTTGTCAAAGTGACAAACCCGTCAAGCTTGTCC
GTTATTGGCACCTCAAGTCCTTATAGAATAAAAGACAAAATACCCACCGA
CGGTATCGTTTTTGACATTGCGCCGGATGTGGACGACCCAGGAAGTCATG
ATTATGAAGACATCGACGCCCAAACAGACACCGGAGTGTTATCTGCACGC
TGGTTCGGCTTCAGTGATGATCCAGCGGCAGTTACCTATGAGGTGGCAGT
GGGGACTTCTTCTGGTGCTCAGGACGTCCGACCCTTTACTGCTGCAAGCG
GTACAGCCGTCTCCATCACCGGCCTTACTCTTCAGTACTTCCAGACCTAC
TTCATCACCGTAAGGGCAAGGAATGGCGCAGGGACGGTCACAGTCAGTTC
AGACGGGGTCACCGTTCTAGAGCACGACGGACGGGTAGGAGGCATGATGG
TAAAAGATGGACCAATGCTGCGTTTCCATCATGTTGGAGCTAACGGACCC
TGTGTGAGCGCTCAACCCCCGAACTGTGCAGCGATTGAAGCAGGAGCATT
AAACCTCCCTCCAAGTGACAGTTACTACATGTTTGTCAAAGTGACAAACC
CGTCAAGCTTGTCCGTTATTGGCACCTCAAGTCCTTATAGAATAAAAGAC
AAAATACCCACCGACGGTATCGTTTTTGACATTGCGCCGGATGTGGACGA
CCCAGGAAGTCATGATTATGAAGACATCGACGCCCAAACAGACACCGGAG
TGTTATCTGCACGCTGGTTCGGCTTCAGTGATGATCCAGCGGCAGTTACC
TATGAGGTGGCAGTGGGGACTTCTTCTGGTGCTCAGGACGTCCGACCCTT
TACTGCTGCAAGCGGTACAGCCGTCTCCATCACCGGCCTTACTCTTCAGT
ACTTCCAGACCTACTTCATCACCGTAAGGGCAAGGAATGGCGCAGGGACG
GTCACAGTCAGTTCAGACGGGGTCACCGTTCTAGAGCACGACGGACGGGT
AGGAGGCATGATGGTAAAAGATGGACCAATGCTGCGTTTCCATCATGTTG
GAGCTAACGGACCCTGTGTGAGCGCTCAACCCCCGAACTGTGCAGCGATT
GAAGCAGGAGCATTAAACCTCCCTCCAAGTGACAGTTACTACATGTTTGT
CAAAGTGACAAACCCGTCAAGCTTGTCCGTTATTGGCACCTCAAGTCCTT
ATAGAATAAAAGACAAAATACCCACCGACGGTATCGTTTTTGACATTGCG
CCGGATGTGGACGACCCAGGAAGTCATGATTATGAAGACATCGACGCCCA
AACAGACACCGGAGTGTTATCTGCACGCTGGTTCGGCTTCAGTGATGATC
CAGCGGCAGTTACCTATGAGGTGGCAGTGGGGACTTCTTCTGGTGCTCAG
GACGTCCGACCCTTTACTGCTGCAAGCGGTACAGCCGTCTCCATCACCGG
CCTTACTCTTCAGTACTTCCAGACCTACTTCATCACCGTAAGGGCAAGGA
ATGGCGCAGGGACGGTCACAGTCAGTTCAGACGGGGTCACCGTTCTAGAG
CACGACGGACGGGTAGGAGGCATGATGGTAAAAGATGGACCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000014 | genome | Sc0000014:2163303..2165902 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96920_cuf1 |
| Biotype | protein_coding |
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