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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96918_cuf9 >transcript:BL96918_cuf9-protein ID=transcript:BL96918_cuf9-protein|Name=transcript:BL96918_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=330bp
CVEPCDKITGICGSACLPGWRGVTCGQPCPPGRFGPNCMSFCRCLDGEAC DAVNGTCPNGCRAGWKGEGCQDACATGEWGSGCEGRCYCRDNTNHCNLAT GPTPDCQCDDYHFGEDCMEERVAPFITDITNVAVNPGEATFLSCSAAGSP LPTADDIVLRDQNGQVYPRFAGFPGGNYTTNSFRIPSTDQDTEYYCVATT TSGSTFQRVEFTFYELPRLTHPPVIQPINIHPTLVLVDWAAWNETIDVGE GPIRSYQLHFKKSEDDDWLPYGDETPSDQSKASYRQMVMRLDFSTQYGFS VQTFREGNNGGGPLGPVLTVETKCMAPTEP Run BLAST on NCBI mRNA from alignment at Sc0000014:3005132..3008602- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96918_cuf9 ID=transcript:BL96918_cuf9|Name=transcript:BL96918_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=3471bp|location=Sequence derived from alignment at Sc0000014:3005132..3008602- (Branchiostoma lanceolatum) TGCGTCGAACCGTGCGACAAGATCACGGGCATCTGCGGCTCCGCCTGCTT
ACCCGGATGGAGAGGGGTCACCTGCGGGCAACGTGAGTCTTTTCTTAGTC
TTTAGTTAACGGCCTCCTTCTTTCTAAACCATTCTACATGTGCTGATATC
TACAAGTTTAAGAGTACGAAAAAGCTGACATTGTCAAGGAATGGTGGTGT
GTTACGCCGAAGGGTGGTTATACCGACTATACAGATACAGTCACATACAG
AATGAGCAACCCACCGCTTCTGTGACGTCAGTTAATGCAGATAGAACACG
TGACTCAATGAGAGGTGGCCCCCCGTCTCTTTCAAGCTTAGACGATAGAC
TATCGACGACATGTATTTATAGATTGTATCATATATCGATTATATTCAAC
AGAACGTGTTGTTTCTTTCTTTCAGCTTGTCCCCCTGGCAGATTTGGACC
GAACTGTATGTCGTTCTGCCGTTGCTTGGATGGTGAAGCTTGCGATGCTG
TGAACGGGACGTGTCCAAATGGATGCAGAGCGGGATGGAAAGGAGAGGGG
TGTCAAGACGGTAGGGAACTGTCTTACATTAGAGTTTAGCCTAACGTTAC
AGAGCTGTGCGATTGCAATGACGTGCCCTCATTCCAGCAGGACTTTCCAT
GAAAATGTCTTCAAATATATGTTGTCCCCGTAATACTTAGGTGCCCGTCG
GTGACGGTGGTGTAGTCCCGGCCGGGCCCCGACGCCACACTTTTGTCCTG
GTGGACTACCGTTTATGGTGGGGGAACCTCCCGGTGCTCGTACTAATACC
TCACGGCGTCTATTTGCTATTGGGTCCCGCGTTGATTTTAAGCTCGGGAT
AAAATGATTCGGGGTCCTGACCGAGCCCCAAAATTGCCGTGAACCGTAAA
CTACACGGCGGGCCCCTTTTTTTCAAGTGGGACCTAAGCATAAACAGAGA
ATGAAAATGTTTTAAGATACAGTTTTCTTAACCCTTTGAAATGTTCTGTT
TTGTTGCTTTTAGCCTGCGCAACAGGCGAGTGGGGCTCCGGATGCGAGGG
TAGATGCTACTGTCGAGACAACACCAATCACTGTAACCTAGCAACAGGAC
CAACGCCCGACTGCCAGTGTGACGACTATCACTTTGGTGAAGACTGTATG
GAAGAAAGTAAGACCCGATTTACACACAAGTTTGCGGAGTCGACTACGGG
CTTTTTGTGAGAAGCTTTAGGCTGCTCAAGTGGAGGTTTCCTACTAGAAA
ATGATACTTTATATATACATATTAAGAAGGACCACAACGACAAATTACCA
ACTGCGAAAAACAATTTCCCCACCTGCACTTTGGAAAATTGTCGTTGTGA
TCCTTCGTACGTAACTAAGCACACCTTGCATATCCGAATCTAAGCATAGT
TTCAAGATAACCATGTAATTATAGGGTTCAAGAGTATTAGACAAAGATAC
CAAATTAACGTTTTCCCCTTTTCGATAGGAGTGGCACCTTTTATAACCGA
CATTACAAACGTGGCGGTGAACCCGGGGGAGGCGACGTTCCTGAGCTGTT
CGGCGGCGGGAAGCCCGCTCCCTACCGCGGACGACATCGTCTTGCGGGAC
CAAAACGGACAAGTACAAATCCTTGCTCTTCTTTACGTATACATGTTCAT
GATTAGCTAGTGCTGTGTACCTAAATTCAGGTTCAGGTTCGGGTCAAGAT
TCAGGTCCTGAGGTTCAGTCAGTAGTAAACACAACAGGACGGCAATGTTT
TCGTCTTTTTTTATAGCACAAATTTCACGATGCATGGAAAGTTTTAGATG
GTTTAGAACAAAAATGAAAAAAGTAAGCGAGAGTTTCTTGCAAGTCCGGA
CTTGGTATCCGACATTTAGATTTTTTTTTACTTAAACCTAAACGTGTTTT
ACAAGTCCAGTTCAAGTCCGGTGTCTAGGTACGCAGCACTATTCATGATA
TACCAAAGTGACGTCCACAATTCTCACGGTATTTCTGTAAGCAGGTTTAG
GGCTCACGAAATGTTTTCGAGTTGCTTAAAGTTTTCATTTTATATGGTGC
GGACTGACTGTCTTTCTTAATGCTGAAATCAGGTGTATCCTCGCTTCGCC
GGTTTTCCCGGAGGAAACTACACCACAAATTCATTCCGGATCCCTTCAAC
GGATCAGGACACGGAATACTACTGCGTAGCAACCACAACATCCGGCTCGA
CGTTCCAAAGGGTGGAGTTTACCTTCTACGGTAGGTTTACAATGGAAATA
CTAGTAGTAGAGGGTCCAGGACGCTTCCTTGAGGTACGACGGCAAAATAC
AAAACCAGGTTTTATTCAAGCCATCTTCTCCCTTGGTGGGCTTGAATAAA
GGTTCTAAACGGGAACTATGCAGCTACAGTGTCTTTTCTGAAGATGAGGC
ATGAGTGCGTACGGTTGACTTGAGGTTTTCTACTACTAATTACTTTAGTG
GCAACTGGAGAGTTATATGTCTTGGCGCAAATTCTAGAAGTGGCATAGTA
CAAAGTGGTGTTACCTTCATGAAAAAATGGAGGTATTGTTTTTGGTCTGT
CTGTGTGTGTGTGTTTGTGCAAAAGTGCCATAGCCCTCCATCTGAATGGT
AAATAATAGTAATTTTAAGCTTGTGACATGTGCAAGTTAGCTAAAGGTGT
ACATAGCCATGCGTAGATTATGTAATTGTATAAGTCATTTGCATGAATAA
AATATTCCATGAAGGTATGAGGTCTCCAAACTCTTGTATGTCATCTTGTT
AACGCCCAGAACTGCCCAGATTAACCCATCCGCCTGTGATTCAACCAATC
AACATCCACCCCACGCTCGTCCTCGTCGACTGGGCAGCTTGGAATGAGAC
CATAGACGTTGGTGAAGGACCAATCAGGTCGTACCAACTTCATTTTAAAA
AGTCCGAAGACGATGATTGGCTGCCATACGGTGACGAGACTCCATCGGAC
CAATCAAAAGCGTCGTACAGACAAATGGTGATGAGGCTGGACTTCTCGAC
GCAGTACGGTTTTAGTGTGCAGACGTTCCGCGAGGGCAATAATGGCGGCG
GTCCTTTGGGACCAGTTCTTACCGTCGAGACCAAGTGCATGGGTTGGTAC
TCCGATCAGAATCTTTGGTATAAGAAAAGGAAAGTCACGTCTTGCGCACA
GGTGTTCCAGTGCTGATTCAATGGTCAGACCGGTATCAACACTTGACGCC
GAGAGCTGAAGAAAGTTGAGCACTGGAATTTTAGTGCCGAATTCGAACGT
GCGATGAATCGGTCGCGGGTGTGCTCAAGGGTTTGAAACCGCCGTCAGCA
CTAGAACCTAGTGCTGAATTACAAAAGCTTCACATTCCACACCTTCGTAG
TTTTGCGTTTGTAAATTAATGTTGGAACTAAATGTCTAGATGTTTTGTTT
TTTTCTGAAATGTCGAATAGCTGTAAAATGTTTTTTTTCTCTTACCACTC
CTATAGCGCCGACAGAACCTC Coding sequence (CDS) from alignment at Sc0000014:3005132..3008602- >transcript:BL96918_cuf9 ID=transcript:BL96918_cuf9|Name=transcript:BL96918_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=6930bp|location=Sequence derived from alignment at Sc0000014:3005132..3008602- (Branchiostoma lanceolatum) TGCGTCGAACCGTGCGACAAGATCACGGGCATCTGCGGCTCCGCCTGCTT ACCCGGATGGAGAGGGGTCACCTGCGGGCAACCTTGTCCCCCTGGCAGAT TTGGACCGAACTGTATGTCGTTCTGCCGTTGCTTGGATGGTGAAGCTTGC GATGCTGTGAACGGGACGTGTCCAAATGGATGCAGAGCGGGATGGAAAGG AGAGGGGTGTCAAGACGCCTGCGCAACAGGCGAGTGGGGCTCCGGATGCG AGGGTAGATGCTACTGTCGAGACAACACCAATCACTGTAACCTAGCAACA GGACCAACGCCCGACTGCCAGTGTGACGACTATCACTTTGGTGAAGACTG TATGGAAGAAAGAGTGGCACCTTTTATAACCGACATTACAAACGTGGCGG TGAACCCGGGGGAGGCGACGTTCCTGAGCTGTTCGGCGGCGGGAAGCCCG CTCCCTACCGCGGACGACATCGTCTTGCGGGACCAAAACGGACAAGTGTA TCCTCGCTTCGCCGGTTTTCCCGGAGGAAACTACACCACAAATTCATTCC GGATCCCTTCAACGGATCAGGACACGGAATACTACTGCGTAGCAACCACA ACATCCGGCTCGACGTTCCAAAGGGTGGAGTTTACCTTCTACGAACTGCC CAGATTAACCCATCCGCCTGTGATTCAACCAATCAACATCCACCCCACGC TCGTCCTCGTCGACTGGGCAGCTTGGAATGAGACCATAGACGTTGGTGAA GGACCAATCAGGTCGTACCAACTTCATTTTAAAAAGTCCGAAGACGATGA TTGGCTGCCATACGGTGACGAGACTCCATCGGACCAATCAAAAGCGTCGT ACAGACAAATGGTGATGAGGCTGGACTTCTCGACGCAGTACGGTTTTAGT GTGCAGACGTTCCGCGAGGGCAATAATGGCGGCGGTCCTTTGGGACCAGT TCTTACCGTCGAGACCAAGTGCATGGCGCCGACAGAACCTTGCGTCGAAC CGTGCGACAAGATCACGGGCATCTGCGGCTCCGCCTGCTTACCCGGATGG AGAGGGGTCACCTGCGGGCAACCTTGTCCCCCTGGCAGATTTGGACCGAA CTGTATGTCGTTCTGCCGTTGCTTGGATGGTGAAGCTTGCGATGCTGTGA ACGGGACGTGTCCAAATGGATGCAGAGCGGGATGGAAAGGAGAGGGGTGT CAAGACGCCTGCGCAACAGGCGAGTGGGGCTCCGGATGCGAGGGTAGATG CTACTGTCGAGACAACACCAATCACTGTAACCTAGCAACAGGACCAACGC CCGACTGCCAGTGTGACGACTATCACTTTGGTGAAGACTGTATGGAAGAA AGAGTGGCACCTTTTATAACCGACATTACAAACGTGGCGGTGAACCCGGG GGAGGCGACGTTCCTGAGCTGTTCGGCGGCGGGAAGCCCGCTCCCTACCG CGGACGACATCGTCTTGCGGGACCAAAACGGACAAGTGTATCCTCGCTTC GCCGGTTTTCCCGGAGGAAACTACACCACAAATTCATTCCGGATCCCTTC AACGGATCAGGACACGGAATACTACTGCGTAGCAACCACAACATCCGGCT CGACGTTCCAAAGGGTGGAGTTTACCTTCTACGAACTGCCCAGATTAACC CATCCGCCTGTGATTCAACCAATCAACATCCACCCCACGCTCGTCCTCGT CGACTGGGCAGCTTGGAATGAGACCATAGACGTTGGTGAAGGACCAATCA GGTCGTACCAACTTCATTTTAAAAAGTCCGAAGACGATGATTGGCTGCCA TACGGTGACGAGACTCCATCGGACCAATCAAAAGCGTCGTACAGACAAAT GGTGATGAGGCTGGACTTCTCGACGCAGTACGGTTTTAGTGTGCAGACGT TCCGCGAGGGCAATAATGGCGGCGGTCCTTTGGGACCAGTTCTTACCGTC GAGACCAAGTGCATGGCGCCGACAGAACCTTGCGTCGAACCGTGCGACAA GATCACGGGCATCTGCGGCTCCGCCTGCTTACCCGGATGGAGAGGGGTCA CCTGCGGGCAACCTTGTCCCCCTGGCAGATTTGGACCGAACTGTATGTCG TTCTGCCGTTGCTTGGATGGTGAAGCTTGCGATGCTGTGAACGGGACGTG TCCAAATGGATGCAGAGCGGGATGGAAAGGAGAGGGGTGTCAAGACGCCT GCGCAACAGGCGAGTGGGGCTCCGGATGCGAGGGTAGATGCTACTGTCGA GACAACACCAATCACTGTAACCTAGCAACAGGACCAACGCCCGACTGCCA GTGTGACGACTATCACTTTGGTGAAGACTGTATGGAAGAAAGAGTGGCAC CTTTTATAACCGACATTACAAACGTGGCGGTGAACCCGGGGGAGGCGACG TTCCTGAGCTGTTCGGCGGCGGGAAGCCCGCTCCCTACCGCGGACGACAT CGTCTTGCGGGACCAAAACGGACAAGTGTATCCTCGCTTCGCCGGTTTTC CCGGAGGAAACTACACCACAAATTCATTCCGGATCCCTTCAACGGATCAG GACACGGAATACTACTGCGTAGCAACCACAACATCCGGCTCGACGTTCCA AAGGGTGGAGTTTACCTTCTACGAACTGCCCAGATTAACCCATCCGCCTG TGATTCAACCAATCAACATCCACCCCACGCTCGTCCTCGTCGACTGGGCA GCTTGGAATGAGACCATAGACGTTGGTGAAGGACCAATCAGGTCGTACCA ACTTCATTTTAAAAAGTCCGAAGACGATGATTGGCTGCCATACGGTGACG AGACTCCATCGGACCAATCAAAAGCGTCGTACAGACAAATGGTGATGAGG CTGGACTTCTCGACGCAGTACGGTTTTAGTGTGCAGACGTTCCGCGAGGG CAATAATGGCGGCGGTCCTTTGGGACCAGTTCTTACCGTCGAGACCAAGT GCATGGCGCCGACAGAACCTTGCGTCGAACCGTGCGACAAGATCACGGGC ATCTGCGGCTCCGCCTGCTTACCCGGATGGAGAGGGGTCACCTGCGGGCA ACCTTGTCCCCCTGGCAGATTTGGACCGAACTGTATGTCGTTCTGCCGTT GCTTGGATGGTGAAGCTTGCGATGCTGTGAACGGGACGTGTCCAAATGGA TGCAGAGCGGGATGGAAAGGAGAGGGGTGTCAAGACGCCTGCGCAACAGG CGAGTGGGGCTCCGGATGCGAGGGTAGATGCTACTGTCGAGACAACACCA ATCACTGTAACCTAGCAACAGGACCAACGCCCGACTGCCAGTGTGACGAC TATCACTTTGGTGAAGACTGTATGGAAGAAAGAGTGGCACCTTTTATAAC CGACATTACAAACGTGGCGGTGAACCCGGGGGAGGCGACGTTCCTGAGCT GTTCGGCGGCGGGAAGCCCGCTCCCTACCGCGGACGACATCGTCTTGCGG GACCAAAACGGACAAGTGTATCCTCGCTTCGCCGGTTTTCCCGGAGGAAA CTACACCACAAATTCATTCCGGATCCCTTCAACGGATCAGGACACGGAAT ACTACTGCGTAGCAACCACAACATCCGGCTCGACGTTCCAAAGGGTGGAG TTTACCTTCTACGAACTGCCCAGATTAACCCATCCGCCTGTGATTCAACC AATCAACATCCACCCCACGCTCGTCCTCGTCGACTGGGCAGCTTGGAATG AGACCATAGACGTTGGTGAAGGACCAATCAGGTCGTACCAACTTCATTTT AAAAAGTCCGAAGACGATGATTGGCTGCCATACGGTGACGAGACTCCATC GGACCAATCAAAAGCGTCGTACAGACAAATGGTGATGAGGCTGGACTTCT CGACGCAGTACGGTTTTAGTGTGCAGACGTTCCGCGAGGGCAATAATGGC GGCGGTCCTTTGGGACCAGTTCTTACCGTCGAGACCAAGTGCATGGCGCC GACAGAACCTTGCGTCGAACCGTGCGACAAGATCACGGGCATCTGCGGCT CCGCCTGCTTACCCGGATGGAGAGGGGTCACCTGCGGGCAACCTTGTCCC CCTGGCAGATTTGGACCGAACTGTATGTCGTTCTGCCGTTGCTTGGATGG TGAAGCTTGCGATGCTGTGAACGGGACGTGTCCAAATGGATGCAGAGCGG GATGGAAAGGAGAGGGGTGTCAAGACGCCTGCGCAACAGGCGAGTGGGGC TCCGGATGCGAGGGTAGATGCTACTGTCGAGACAACACCAATCACTGTAA CCTAGCAACAGGACCAACGCCCGACTGCCAGTGTGACGACTATCACTTTG GTGAAGACTGTATGGAAGAAAGAGTGGCACCTTTTATAACCGACATTACA AACGTGGCGGTGAACCCGGGGGAGGCGACGTTCCTGAGCTGTTCGGCGGC GGGAAGCCCGCTCCCTACCGCGGACGACATCGTCTTGCGGGACCAAAACG GACAAGTGTATCCTCGCTTCGCCGGTTTTCCCGGAGGAAACTACACCACA AATTCATTCCGGATCCCTTCAACGGATCAGGACACGGAATACTACTGCGT AGCAACCACAACATCCGGCTCGACGTTCCAAAGGGTGGAGTTTACCTTCT ACGAACTGCCCAGATTAACCCATCCGCCTGTGATTCAACCAATCAACATC CACCCCACGCTCGTCCTCGTCGACTGGGCAGCTTGGAATGAGACCATAGA CGTTGGTGAAGGACCAATCAGGTCGTACCAACTTCATTTTAAAAAGTCCG AAGACGATGATTGGCTGCCATACGGTGACGAGACTCCATCGGACCAATCA AAAGCGTCGTACAGACAAATGGTGATGAGGCTGGACTTCTCGACGCAGTA CGGTTTTAGTGTGCAGACGTTCCGCGAGGGCAATAATGGCGGCGGTCCTT TGGGACCAGTTCTTACCGTCGAGACCAAGTGCATGGCGCCGACAGAACCT TGCGTCGAACCGTGCGACAAGATCACGGGCATCTGCGGCTCCGCCTGCTT ACCCGGATGGAGAGGGGTCACCTGCGGGCAACCTTGTCCCCCTGGCAGAT TTGGACCGAACTGTATGTCGTTCTGCCGTTGCTTGGATGGTGAAGCTTGC GATGCTGTGAACGGGACGTGTCCAAATGGATGCAGAGCGGGATGGAAAGG AGAGGGGTGTCAAGACGCCTGCGCAACAGGCGAGTGGGGCTCCGGATGCG AGGGTAGATGCTACTGTCGAGACAACACCAATCACTGTAACCTAGCAACA GGACCAACGCCCGACTGCCAGTGTGACGACTATCACTTTGGTGAAGACTG TATGGAAGAAAGAGTGGCACCTTTTATAACCGACATTACAAACGTGGCGG TGAACCCGGGGGAGGCGACGTTCCTGAGCTGTTCGGCGGCGGGAAGCCCG CTCCCTACCGCGGACGACATCGTCTTGCGGGACCAAAACGGACAAGTGTA TCCTCGCTTCGCCGGTTTTCCCGGAGGAAACTACACCACAAATTCATTCC GGATCCCTTCAACGGATCAGGACACGGAATACTACTGCGTAGCAACCACA ACATCCGGCTCGACGTTCCAAAGGGTGGAGTTTACCTTCTACGAACTGCC CAGATTAACCCATCCGCCTGTGATTCAACCAATCAACATCCACCCCACGC TCGTCCTCGTCGACTGGGCAGCTTGGAATGAGACCATAGACGTTGGTGAA GGACCAATCAGGTCGTACCAACTTCATTTTAAAAAGTCCGAAGACGATGA TTGGCTGCCATACGGTGACGAGACTCCATCGGACCAATCAAAAGCGTCGT ACAGACAAATGGTGATGAGGCTGGACTTCTCGACGCAGTACGGTTTTAGT GTGCAGACGTTCCGCGAGGGCAATAATGGCGGCGGTCCTTTGGGACCAGT TCTTACCGTCGAGACCAAGTGCATGGCGCCGACAGAACCTTGCGTCGAAC CGTGCGACAAGATCACGGGCATCTGCGGCTCCGCCTGCTTACCCGGATGG AGAGGGGTCACCTGCGGGCAACCTTGTCCCCCTGGCAGATTTGGACCGAA CTGTATGTCGTTCTGCCGTTGCTTGGATGGTGAAGCTTGCGATGCTGTGA ACGGGACGTGTCCAAATGGATGCAGAGCGGGATGGAAAGGAGAGGGGTGT CAAGACGCCTGCGCAACAGGCGAGTGGGGCTCCGGATGCGAGGGTAGATG CTACTGTCGAGACAACACCAATCACTGTAACCTAGCAACAGGACCAACGC CCGACTGCCAGTGTGACGACTATCACTTTGGTGAAGACTGTATGGAAGAA AGAGTGGCACCTTTTATAACCGACATTACAAACGTGGCGGTGAACCCGGG GGAGGCGACGTTCCTGAGCTGTTCGGCGGCGGGAAGCCCGCTCCCTACCG CGGACGACATCGTCTTGCGGGACCAAAACGGACAAGTGTATCCTCGCTTC GCCGGTTTTCCCGGAGGAAACTACACCACAAATTCATTCCGGATCCCTTC AACGGATCAGGACACGGAATACTACTGCGTAGCAACCACAACATCCGGCT CGACGTTCCAAAGGGTGGAGTTTACCTTCTACGAACTGCCCAGATTAACC CATCCGCCTGTGATTCAACCAATCAACATCCACCCCACGCTCGTCCTCGT CGACTGGGCAGCTTGGAATGAGACCATAGACGTTGGTGAAGGACCAATCA GGTCGTACCAACTTCATTTTAAAAAGTCCGAAGACGATGATTGGCTGCCA TACGGTGACGAGACTCCATCGGACCAATCAAAAGCGTCGTACAGACAAAT GGTGATGAGGCTGGACTTCTCGACGCAGTACGGTTTTAGTGTGCAGACGT TCCGCGAGGGCAATAATGGCGGCGGTCCTTTGGGACCAGTTCTTACCGTC GAGACCAAGTGCATGGCGCCGACAGAACCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000014 | genome | Sc0000014:3005132..3008602 - |
Properties
Property Name | Value |
Transcript id | BL96918_cuf9 |
Biotype | protein_coding |
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