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transcript:BL96917_cuf8 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96917_cuf8
Unique Nametranscript:BL96917_cuf8
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96917_cuf8

>transcript:BL96917_cuf8-protein ID=transcript:BL96917_cuf8-protein|Name=transcript:BL96917_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=200bp
QCPGTKEVITNSKTLPSRTTYILDGLQPYSTYEISLSARTIVGPGPMVSR
SVTTLTTAPSGPPTNVTIDEVLITSILVSWLPPPCPESNGVIIQYGVSVV
PLDTGNEREVPDVMTRNTRMSVSGLRPSAWCGVRVRAYTDVGPGPYSPKV
NITTLTMNCSKGTFGVFCELTCHCLGGEACDRFNGSCSAACAAGWTGADC
Run BLAST on NCBI

mRNA from alignment at Sc0000014:3002151..3003884-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96917_cuf8 ID=transcript:BL96917_cuf8|Name=transcript:BL96917_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=1734bp|location=Sequence derived from alignment at Sc0000014:3002151..3003884- (Branchiostoma lanceolatum)
CCAGTGTCCCGGTACTAAGGAGGTCATAACGAACTCAAAGGTAAATCTAG CCGATCCGACTGTTGGAGGGCTTGTCTTGCTTGCAGTCTTATACATTAGC CTTTATAGGGCTAATGTATAAGAGAAGAGAAGCCCTCCAACAGTCTCCTA GGCAAAGGTAAATAGAGAATTAAGATTAGAAGTTTTATGGGAAAATGATA AAACAAAGACATCACAACGTGAAGCATCAAGACCAACTGTGTCCGTTTCA GCACCAAGGATAGATACAATCGAACTGCTGTATTTAGATTCTGTAATATC TGAGAAGTTATGTGTCATCAGCTGAGGAAATGCACCCATTCGTGTTTCTA GTTCTGTTAATTTGAATGGAAAATGCTTCATAAGCCACGGATGTCATTTT GTACCAGCCCATTCTATCAGCTGACGAAATGCACAAATTCGTGTTCCTGT TAATTTTCGTGGAAAATGCGTCTAAAGCTACCAATTTCTTTTTGTATTAG TCCTTTTGCTTGTATGTGCATTTCGATTATTTCCAGACATTGCCCAGCCG GACAACGTACATACTTGACGGGCTGCAGCCGTACTCAACATACGAGATCT CGCTGAGTGCACGAACTATCGTCGGCCCGGGCCCTATGGTGTCCAGGAGT GTTACCACGCTAACAACAGGTACGTCGCATTTTCCTTCAGCACTAGATCG ATCTGTTACTTTACCCCTACTTATGCTTCGGTCACATTTGCGCCGGTACC TGTAGGAGGTGTAGCCCTGTCCGGGCCCTTCTCACGATTAGCTTACGGCG TCTATTTGTTACCGGGTCCCACGTTAATTCTAAGTTCGAGCTGAAATGAT TCGGGGTCCCAGTCGGGCCCCAAAATAGCCCGGCAACCGCAGGGTGTCCC ATGTGACCACGCCCAAATTGCAAAAAAAAGCAGCCCGTCAACTACCCGGC GGGCCCCTTTCCCAATTGTGACTTAAGTATTAATCAGTGACATGATGTGT CTTTTCTTGATATAATAACTTAAAGACACCCTTAAGAAAGGTGTTCTATG TTACCCTTGAAACTACATTCTCTTCTTCGCCTCAGCACCAAGCGGTCCCC CAACCAACGTCACAATCGACGAGGTCCTCATCACTAGTATCCTGGTTTCC TGGTTACCACCTCCCTGCCCTGAGTCCAACGGCGTCATCATCCAATATGG CGTCTCTGTGGTACCGTTGGACACTGGGAACGAGAGGGAAGTCCCGGATG TGATGACGAGGAACACGCGGATGAGCGTCTCGGGCCTGAGGCCCAGTGCG TGGTGTGGTGTGAGAGTCAGGGCGTACACAGACGTCGGGCCTGGCCCATA CAGCCCTAAGGTTAACATCACCACCCTAACAATGAGTACGTATTCTCTGA TGTTTCATATTTACCATTTTTGTATGTGCGCTATGGGCTCTTTCTTTTTG TACAATACGTTTTGAAAATTAATAAAAAGAGTTTGAAAATAATTACAATG TGAAGTCGATTCAGTGATTTACATATGAAAACTAAGGCAACTATTTCCTG CAAAACTCAACTTTCTAACCAAAGAATATGTAACCCTTCTTTCTTTTTCT AAAGACTGCAGCAAGGGTACCTTCGGCGTTTTCTGTGAGTTGACGTGCCA CTGCCTCGGCGGGGAAGCGTGCGACCGGTTCAACGGCTCCTGCTCGGCGG CATGCGCGGCTGGGTGGACCGGGGCCGACTGCCA

Coding sequence (CDS) from alignment at Sc0000014:3002151..3003884-

>transcript:BL96917_cuf8 ID=transcript:BL96917_cuf8|Name=transcript:BL96917_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=2400bp|location=Sequence derived from alignment at Sc0000014:3002151..3003884- (Branchiostoma lanceolatum)
CAGTGTCCCGGTACTAAGGAGGTCATAACGAACTCAAAGACATTGCCCAG
CCGGACAACGTACATACTTGACGGGCTGCAGCCGTACTCAACATACGAGA
TCTCGCTGAGTGCACGAACTATCGTCGGCCCGGGCCCTATGGTGTCCAGG
AGTGTTACCACGCTAACAACAGCACCAAGCGGTCCCCCAACCAACGTCAC
AATCGACGAGGTCCTCATCACTAGTATCCTGGTTTCCTGGTTACCACCTC
CCTGCCCTGAGTCCAACGGCGTCATCATCCAATATGGCGTCTCTGTGGTA
CCGTTGGACACTGGGAACGAGAGGGAAGTCCCGGATGTGATGACGAGGAA
CACGCGGATGAGCGTCTCGGGCCTGAGGCCCAGTGCGTGGTGTGGTGTGA
GAGTCAGGGCGTACACAGACGTCGGGCCTGGCCCATACAGCCCTAAGGTT
AACATCACCACCCTAACAATGAACTGCAGCAAGGGTACCTTCGGCGTTTT
CTGTGAGTTGACGTGCCACTGCCTCGGCGGGGAAGCGTGCGACCGGTTCA
ACGGCTCCTGCTCGGCGGCATGCGCGGCTGGGTGGACCGGGGCCGACTGC
CAGTGTCCCGGTACTAAGGAGGTCATAACGAACTCAAAGACATTGCCCAG
CCGGACAACGTACATACTTGACGGGCTGCAGCCGTACTCAACATACGAGA
TCTCGCTGAGTGCACGAACTATCGTCGGCCCGGGCCCTATGGTGTCCAGG
AGTGTTACCACGCTAACAACAGCACCAAGCGGTCCCCCAACCAACGTCAC
AATCGACGAGGTCCTCATCACTAGTATCCTGGTTTCCTGGTTACCACCTC
CCTGCCCTGAGTCCAACGGCGTCATCATCCAATATGGCGTCTCTGTGGTA
CCGTTGGACACTGGGAACGAGAGGGAAGTCCCGGATGTGATGACGAGGAA
CACGCGGATGAGCGTCTCGGGCCTGAGGCCCAGTGCGTGGTGTGGTGTGA
GAGTCAGGGCGTACACAGACGTCGGGCCTGGCCCATACAGCCCTAAGGTT
AACATCACCACCCTAACAATGAACTGCAGCAAGGGTACCTTCGGCGTTTT
CTGTGAGTTGACGTGCCACTGCCTCGGCGGGGAAGCGTGCGACCGGTTCA
ACGGCTCCTGCTCGGCGGCATGCGCGGCTGGGTGGACCGGGGCCGACTGC
CAGTGTCCCGGTACTAAGGAGGTCATAACGAACTCAAAGACATTGCCCAG
CCGGACAACGTACATACTTGACGGGCTGCAGCCGTACTCAACATACGAGA
TCTCGCTGAGTGCACGAACTATCGTCGGCCCGGGCCCTATGGTGTCCAGG
AGTGTTACCACGCTAACAACAGCACCAAGCGGTCCCCCAACCAACGTCAC
AATCGACGAGGTCCTCATCACTAGTATCCTGGTTTCCTGGTTACCACCTC
CCTGCCCTGAGTCCAACGGCGTCATCATCCAATATGGCGTCTCTGTGGTA
CCGTTGGACACTGGGAACGAGAGGGAAGTCCCGGATGTGATGACGAGGAA
CACGCGGATGAGCGTCTCGGGCCTGAGGCCCAGTGCGTGGTGTGGTGTGA
GAGTCAGGGCGTACACAGACGTCGGGCCTGGCCCATACAGCCCTAAGGTT
AACATCACCACCCTAACAATGAACTGCAGCAAGGGTACCTTCGGCGTTTT
CTGTGAGTTGACGTGCCACTGCCTCGGCGGGGAAGCGTGCGACCGGTTCA
ACGGCTCCTGCTCGGCGGCATGCGCGGCTGGGTGGACCGGGGCCGACTGC
CAGTGTCCCGGTACTAAGGAGGTCATAACGAACTCAAAGACATTGCCCAG
CCGGACAACGTACATACTTGACGGGCTGCAGCCGTACTCAACATACGAGA
TCTCGCTGAGTGCACGAACTATCGTCGGCCCGGGCCCTATGGTGTCCAGG
AGTGTTACCACGCTAACAACAGCACCAAGCGGTCCCCCAACCAACGTCAC
AATCGACGAGGTCCTCATCACTAGTATCCTGGTTTCCTGGTTACCACCTC
CCTGCCCTGAGTCCAACGGCGTCATCATCCAATATGGCGTCTCTGTGGTA
CCGTTGGACACTGGGAACGAGAGGGAAGTCCCGGATGTGATGACGAGGAA
CACGCGGATGAGCGTCTCGGGCCTGAGGCCCAGTGCGTGGTGTGGTGTGA
GAGTCAGGGCGTACACAGACGTCGGGCCTGGCCCATACAGCCCTAAGGTT
AACATCACCACCCTAACAATGAACTGCAGCAAGGGTACCTTCGGCGTTTT
CTGTGAGTTGACGTGCCACTGCCTCGGCGGGGAAGCGTGCGACCGGTTCA
ACGGCTCCTGCTCGGCGGCATGCGCGGCTGGGTGGACCGGGGCCGACTGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96917gene:BL96917Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96917_cuf8transcript:BL96917_cuf8-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96917_cuf8-E1BL96917_cuf8-E1-1564476830-121415Branchiostoma lanceolatumexon
BL96917_cuf8-E2BL96917_cuf8-E2-1564476830-121412Branchiostoma lanceolatumexon
BL96917_cuf8-E3BL96917_cuf8-E3-1564476830-121410Branchiostoma lanceolatumexon
BL96917_cuf8-E4BL96917_cuf8-E4-1564476830-121408Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000014genomeSc0000014:3002151..3003884 -
Properties
Property NameValue
Transcript idBL96917_cuf8
Biotypeprotein_coding