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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96912_cuf1 >transcript:BL96912_cuf1-protein ID=transcript:BL96912_cuf1-protein|Name=transcript:BL96912_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=186bp
CAVHTPLVTLHRTRTLTGSGSSTVHRVERLPTESAMGSKRVAIIGAGVSG
LTSIKACLEEGLQPVCFEQHEDLGGVWYYSDDVRPNQGAAMYRSLITNSS
KEMMSFSDFPFPKDTPPYLPYHRVHTYLQDYAQHFDLKKHIRFGTQVSRI
EKTEDFDETGRWEVRTVQTGYSDGEQKEIFDAIMGV Run BLAST on NCBI mRNA from alignment at Sc0000229:26023..27756- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96912_cuf1 ID=transcript:BL96912_cuf1|Name=transcript:BL96912_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1734bp|location=Sequence derived from alignment at Sc0000229:26023..27756- (Branchiostoma lanceolatum)
GTTGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTG
ACCGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGA
ATCAGGTAAGAGCAAGTAAGCTTAATCCCCAGTTCTTTAAGGTGAGGGTT
GCACGGGGCAGAGTGGGTGAGATTTTGTATCATATTACTGCTTGTGTAAG
GTTTCCCTGATTTGGCTTTCTTTGCTTCGCTTCACAAATCGGCCATGTAA
TTAAGAGGTTTCTACTGCACTTTATTAGTATCTTAGTATAGGTATAACCT
GTTGATATCGCAGTACTTAGTATCCTTATCCATTATAGAATTTACGATTA
ACCTTCGACATATAGTTGCAAATAAATCATTTTTACTTTTAATTGTTATT
TTGAATTCAGAAAAATAGTATTTGATTAAATGTAGAACCTGTGTCTTGAG
TAGTTGACCCCTTTAAAATTCGATAATTTTGTGGTCCCGTAAAACTCGAT
CCTGTTTGTCCCTCCCTAGCCATGGGTTCTAAGAGAGTGGCCATTATAGG
AGCCGGAGTGAGCGGACTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGC
TGCAGCCTGTCTGTTTCGAGCAACATGAGGATCTCGGTAAGAACAAGACA
TTACACGTCCTAAAGTTCATTTCAATAGCGTTGAAGAATAAAATAGCGAA
TTCCGTTCTGACTGATATAGCTTGACAATACAAAAAGGCTTCGTGGACTA
AATTTGAATACAGTAGTATAGACTATCTTTGAGACCCCCGATAGAAGAGC
TGAAAATAGAAGGGAAGGATGTGTACATATGCGTGTGCATACGACTTTTG
AGGTACGGTAAATCATGCTCGCCTGTTATAAAATCCCTATCATTTGTATA
GTCAATAGGCCACCTGCTGCCATGCTGCTATCTTACTTTTGAAAATATGA
CTATACGTAGTCCCTGACACTGGAGGTGAATTATATTTGTTCCCTTGACT
TCTACCTGCTGTGTGCTACTGCAAATAATCTCGATGCAAACCGCTATTCC
AGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCCG
CCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATTC
AGCGACTTCCCCTTCCCCAAGGACACGCCCCCCTACCTGCCGTACCACCG
TGTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAAC
ACATCCGATTCGGCACACAGGTAGGGATATCCTTGTTGAACCATGGCCAT
TGATTCTATAACATCTGTACTAAGATCTTTGTTTTGATGTCCTTCTTTCT
TACGTTCAACGCTGTCTATCACTCCAGGTCAGTCGCATAGAGAAGACAGA
AGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTT
ATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCATGGTACGTACT
AACGGGGCTATAGAAACAGAAATGTTTAACACAGCAATGACTGATGATCT
CCGATAAGAGTGAAGCGTAATAAACCCAGCCGTCCACTTACGCCATCTTT
TACATGAGGCTGACGATGTGATGGTTCACCGTTCTTTGGCCCTTCGATAT
TGTTGAACTTAAAGTCCCTATGTAAGCAAACTTCTCTCAACTTTATCTCA
CGACGCTCTGTTTCCTCCCCAGGTGTGTAACGGC Coding sequence (CDS) from alignment at Sc0000229:26023..27756- >transcript:BL96912_cuf1 ID=transcript:BL96912_cuf1|Name=transcript:BL96912_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2805bp|location=Sequence derived from alignment at Sc0000229:26023..27756- (Branchiostoma lanceolatum)
TGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTGAC
CGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGAAT
CAGCCATGGGTTCTAAGAGAGTGGCCATTATAGGAGCCGGAGTGAGCGGA
CTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGCTGCAGCCTGTCTGTTT
CGAGCAACATGAGGATCTCGGCGGCGTGTGGTACTACTCTGACGATGTCA
GGCCCAACCAGGGGGCCGCCATGTACCGCTCTCTCATCACAAACTCCAGT
AAAGAAATGATGTCATTCAGCGACTTCCCCTTCCCCAAGGACACGCCCCC
CTACCTGCCGTACCACCGTGTGCACACATATCTACAGGACTACGCTCAGC
ACTTCGACCTGAAGAAACACATCCGATTCGGCACACAGGTCAGTCGCATA
GAGAAGACAGAAGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGT
ACAGACGGGTTATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCA
TGGGTGTGTAATGTGCTGTCCACACACCGCTAGTAACGTTACACCGTACG
CGTACTTTGACCGGCAGTGGCTCGTCGACAGTTCATCGCGTGGAAAGGTT
ACCTACTGAATCAGCCATGGGTTCTAAGAGAGTGGCCATTATAGGAGCCG
GAGTGAGCGGACTCACGTCAATCAAGGCTTGTCTGGAGGAGGGGCTGCAG
CCTGTCTGTTTCGAGCAACATGAGGATCTCGGCGGCGTGTGGTACTACTC
TGACGATGTCAGGCCCAACCAGGGGGCCGCCATGTACCGCTCTCTCATCA
CAAACTCCAGTAAAGAAATGATGTCATTCAGCGACTTCCCCTTCCCCAAG
GACACGCCCCCCTACCTGCCGTACCACCGTGTGCACACATATCTACAGGA
CTACGCTCAGCACTTCGACCTGAAGAAACACATCCGATTCGGCACACAGG
TCAGTCGCATAGAGAAGACAGAAGACTTTGATGAGACTGGCCGGTGGGAG
GTCCGTACTGTACAGACGGGTTATAGCGATGGGGAACAGAAAGAGATCTT
TGACGCCATCATGGGTGTGTAATGTGCTGTCCACACACCGCTAGTAACGT
TACACCGTACGCGTACTTTGACCGGCAGTGGCTCGTCGACAGTTCATCGC
GTGGAAAGGTTACCTACTGAATCAGCCATGGGTTCTAAGAGAGTGGCCAT
TATAGGAGCCGGAGTGAGCGGACTCACGTCAATCAAGGCTTGTCTGGAGG
AGGGGCTGCAGCCTGTCTGTTTCGAGCAACATGAGGATCTCGGCGGCGTG
TGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCCGCCATGTACCG
CTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATTCAGCGACTTCC
CCTTCCCCAAGGACACGCCCCCCTACCTGCCGTACCACCGTGTGCACACA
TATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAACACATCCGATT
CGGCACACAGGTCAGTCGCATAGAGAAGACAGAAGACTTTGATGAGACTG
GCCGGTGGGAGGTCCGTACTGTACAGACGGGTTATAGCGATGGGGAACAG
AAAGAGATCTTTGACGCCATCATGGGTGTGTAATGTGCTGTCCACACACC
GCTAGTAACGTTACACCGTACGCGTACTTTGACCGGCAGTGGCTCGTCGA
CAGTTCATCGCGTGGAAAGGTTACCTACTGAATCAGCCATGGGTTCTAAG
AGAGTGGCCATTATAGGAGCCGGAGTGAGCGGACTCACGTCAATCAAGGC
TTGTCTGGAGGAGGGGCTGCAGCCTGTCTGTTTCGAGCAACATGAGGATC
TCGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCC
GCCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATT
CAGCGACTTCCCCTTCCCCAAGGACACGCCCCCCTACCTGCCGTACCACC
GTGTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAA
CACATCCGATTCGGCACACAGGTCAGTCGCATAGAGAAGACAGAAGACTT
TGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTTATAGCG
ATGGGGAACAGAAAGAGATCTTTGACGCCATCATGGGTGTGTAATGTGCT
GTCCACACACCGCTAGTAACGTTACACCGTACGCGTACTTTGACCGGCAG
TGGCTCGTCGACAGTTCATCGCGTGGAAAGGTTACCTACTGAATCAGCCA
TGGGTTCTAAGAGAGTGGCCATTATAGGAGCCGGAGTGAGCGGACTCACG
TCAATCAAGGCTTGTCTGGAGGAGGGGCTGCAGCCTGTCTGTTTCGAGCA
ACATGAGGATCTCGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCA
ACCAGGGGGCCGCCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAA
ATGATGTCATTCAGCGACTTCCCCTTCCCCAAGGACACGCCCCCCTACCT
GCCGTACCACCGTGTGCACACATATCTACAGGACTACGCTCAGCACTTCG
ACCTGAAGAAACACATCCGATTCGGCACACAGGTCAGTCGCATAGAGAAG
ACAGAAGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGAC
GGGTTATAGCGATGGGGAACAGAAAGAGATCTTTGACGCCATCATGGGTG
TGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000229 | genome | Sc0000229:26023..27756 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96912_cuf1 |
| Biotype | protein_coding |
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