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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96911_cuf5 >transcript:BL96911_cuf5-protein ID=transcript:BL96911_cuf5-protein|Name=transcript:BL96911_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=286bp
APVDPVCADGQIKCDKVPAGLYPDLSDCTWYYECPDTTRGNDPAHQHCPP
PMYFDWDLLMCMNLSTICTALQCPNLTALTNGTISPVGQHYHTDVVTFTC
YPGYELDGASSATCDANLTWSHPIPTCRDVYECTAGSPTCSPQASCTNTV
GSFACTCNSGYSGNGFTCTDENECIDGSHTCDLDAICTNTPGNFACTCKS
GYSGDGLTCTDDNECADGNHNCSPQASCKNTPGSFNCSCNLGYSGDGVTC
ADNNECTDGTHDCSPDASCTNTQGSFLCTCNTGYSG Run BLAST on NCBI mRNA from alignment at Sc0000023:1836626..1838768- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96911_cuf5 ID=transcript:BL96911_cuf5|Name=transcript:BL96911_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=2143bp|location=Sequence derived from alignment at Sc0000023:1836626..1838768- (Branchiostoma lanceolatum)
CGCACCAGTCGACCCGGTCTGTGCAGGTACGTCCAAATCATCCATTTACA
ATCATTTGCATTAAAAAAAACCTACATGTTTCAAATGCCATAATTTTACT
GCACAGCATAACTACGAAATCGGCCTTTGGTATGCGTGGCAAAAGCCAGC
ATGTCAAATAACGCAGTCTTTCTCTTGAAGTCAGCAAGAACAGTCACTGT
GTTATTTAAAAGCGAGGTTGAGCAAGAGCGTTCAACATCCACCATGCCCA
TTCGTGTCGTCAGAATTTTATGCAAATTTGCTATCACTTCCATCAACCTT
AGATGGGCAGATAAAATGCGATAAGGTACCAGCTGGACTGTACCCAGACC
TGAGTGACTGTACCTGGTATTACGAGTGCCCAGACACGACACGCGGAAAC
GACCCGGCACATCAGCATTGCCCCCCACCGATGTACTTCGATTGGGACCT
TCTGATGTGTATGAACCTATCGACAATATGTACAGGCAAGTTCTTTAAAA
AGGTTTTTGACTTAGTTTTCACATTGATAGATTTTGTCTTATTTGAAGTA
AGTTCTTTGTGTAAGACACACTAGAAGGAATCCAAAAAACCTTTGTCATC
TCCTTTTCTTCAAAATCTTCAGACTACATTAATTCACAGTTTCACAGCTT
ATATGCCATTTTTACCCAAAATGCAATAGTTGGTGCTAGTAAGGCAGACT
TAAATGTATTAGGATAATTGTAATATCCTCCGAAATCTAGGTATGTTTTT
CTAATAAACATCCATTAAAAACTTGATGATTTCAGCTCTGCAATGTCCCA
ATCTGACGGCCCTAACCAATGGAACGATAAGTCCGGTCGGGCAGCACTAT
CACACTGACGTGGTTACGTTCACCTGTTACCCGGGGTACGAGCTGGACGG
AGCCTCTAGTGCGACTTGTGACGCTAACCTAACATGGAGCCATCCTATTC
CAACATGCAGAGGTACCTTGTTAGATGCACTCCTTTGATTTAACAATTGT
ATGATGTTGTTTGTCGTGGAGTTGCCGGTCACGATGAGAATTGTTTGTTC
TGATAAGATATCATGGAATGTTTTTTAAATTCCTATTGTTATGCGTCACA
GCTGATTTGTAGTTTGTTTGTACAGATGTTTATGAATGCACAGCTGGGAG
TCCTACCTGCAGCCCACAAGCCTCCTGTACCAACACAGTTGGTAGCTTTG
CCTGTACTTGTAATTCAGGTTATAGCGGCAACGGTTTCACTTGTACTGGT
ACGTAACGATACTGTAACGTTCTTGATACTGTAGACAGATGATTATATTT
AAATTTTCAAAACATATAAACCACCACGTAGGCTGTCAAGTCCTTGATAA
GGAATGCATGGACGGCCATTTTGTTCTGATGTTATCAGTATAGCTTTATG
TTTTTTAACTGATGTCTTAGTAGAAAGTTGATTCACATTTTGTTTATGCA
GATGAGAATGAATGTATAGATGGGAGCCACACATGTGACCTCGACGCTAT
CTGTACCAACACACCAGGCAATTTTGCCTGCACCTGCAAGTCAGGCTACA
GTGGTGATGGTCTAACCTGCACCGGTGAGGACTAATTTTGTATTTTTGTT
AACATTGTATAATTCATTGATTGATTAATTAGAATGATGTCAGCATGTCG
ACAGAGTTGAATGTGGCTATCCATTTCATTTAAGCGCAGTCTGATATGTG
ATAAGAAAACTTATTTCGCGTTTGTTCGTACAGATGACAACGAATGTGCA
GATGGTAACCACAACTGCAGCCCCCAGGCCTCCTGTAAAAATACACCAGG
CAGCTTTAACTGTTCTTGTAACTTAGGCTACAGCGGCGACGGTGTCACGT
GTGCTGGTAAGACAACGATTCTGTGACTTTCCTTTACATGGTTCACCTTG
CAAGACAAATTAGGTAGGCTGCAAAGTTCAGACTAGATGACCGGGTAGCC
GTATTATGGCTCGGATGTTATCAATTATTATAGATACATCTTTTAAAACT
TTTATCTTGTACGAAAGTGAATTTGTTTTTTGTGTGCAGATAATAATGAA
TGCACAGATGGGACCCACGACTGCAGTCCTGATGCGTCCTGTACCAATAC
ACAAGGCAGCTTCTTATGTACTTGTAACACAGGCTACAGCGGC Coding sequence (CDS) from alignment at Sc0000023:1836626..1838768- >transcript:BL96911_cuf5 ID=transcript:BL96911_cuf5|Name=transcript:BL96911_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=6006bp|location=Sequence derived from alignment at Sc0000023:1836626..1838768- (Branchiostoma lanceolatum)
GCACCAGTCGACCCGGTCTGTGCAGATGGGCAGATAAAATGCGATAAGGT
ACCAGCTGGACTGTACCCAGACCTGAGTGACTGTACCTGGTATTACGAGT
GCCCAGACACGACACGCGGAAACGACCCGGCACATCAGCATTGCCCCCCA
CCGATGTACTTCGATTGGGACCTTCTGATGTGTATGAACCTATCGACAAT
ATGTACAGCTCTGCAATGTCCCAATCTGACGGCCCTAACCAATGGAACGA
TAAGTCCGGTCGGGCAGCACTATCACACTGACGTGGTTACGTTCACCTGT
TACCCGGGGTACGAGCTGGACGGAGCCTCTAGTGCGACTTGTGACGCTAA
CCTAACATGGAGCCATCCTATTCCAACATGCAGAGATGTTTATGAATGCA
CAGCTGGGAGTCCTACCTGCAGCCCACAAGCCTCCTGTACCAACACAGTT
GGTAGCTTTGCCTGTACTTGTAATTCAGGTTATAGCGGCAACGGTTTCAC
TTGTACTGATGAGAATGAATGTATAGATGGGAGCCACACATGTGACCTCG
ACGCTATCTGTACCAACACACCAGGCAATTTTGCCTGCACCTGCAAGTCA
GGCTACAGTGGTGATGGTCTAACCTGCACCGATGACAACGAATGTGCAGA
TGGTAACCACAACTGCAGCCCCCAGGCCTCCTGTAAAAATACACCAGGCA
GCTTTAACTGTTCTTGTAACTTAGGCTACAGCGGCGACGGTGTCACGTGT
GCTGATAATAATGAATGCACAGATGGGACCCACGACTGCAGTCCTGATGC
GTCCTGTACCAATACACAAGGCAGCTTCTTATGTACTTGTAACACAGGCT
ACAGCGGCGCACCAGTCGACCCGGTCTGTGCAGATGGGCAGATAAAATGC
GATAAGGTACCAGCTGGACTGTACCCAGACCTGAGTGACTGTACCTGGTA
TTACGAGTGCCCAGACACGACACGCGGAAACGACCCGGCACATCAGCATT
GCCCCCCACCGATGTACTTCGATTGGGACCTTCTGATGTGTATGAACCTA
TCGACAATATGTACAGCTCTGCAATGTCCCAATCTGACGGCCCTAACCAA
TGGAACGATAAGTCCGGTCGGGCAGCACTATCACACTGACGTGGTTACGT
TCACCTGTTACCCGGGGTACGAGCTGGACGGAGCCTCTAGTGCGACTTGT
GACGCTAACCTAACATGGAGCCATCCTATTCCAACATGCAGAGATGTTTA
TGAATGCACAGCTGGGAGTCCTACCTGCAGCCCACAAGCCTCCTGTACCA
ACACAGTTGGTAGCTTTGCCTGTACTTGTAATTCAGGTTATAGCGGCAAC
GGTTTCACTTGTACTGATGAGAATGAATGTATAGATGGGAGCCACACATG
TGACCTCGACGCTATCTGTACCAACACACCAGGCAATTTTGCCTGCACCT
GCAAGTCAGGCTACAGTGGTGATGGTCTAACCTGCACCGATGACAACGAA
TGTGCAGATGGTAACCACAACTGCAGCCCCCAGGCCTCCTGTAAAAATAC
ACCAGGCAGCTTTAACTGTTCTTGTAACTTAGGCTACAGCGGCGACGGTG
TCACGTGTGCTGATAATAATGAATGCACAGATGGGACCCACGACTGCAGT
CCTGATGCGTCCTGTACCAATACACAAGGCAGCTTCTTATGTACTTGTAA
CACAGGCTACAGCGGCGCACCAGTCGACCCGGTCTGTGCAGATGGGCAGA
TAAAATGCGATAAGGTACCAGCTGGACTGTACCCAGACCTGAGTGACTGT
ACCTGGTATTACGAGTGCCCAGACACGACACGCGGAAACGACCCGGCACA
TCAGCATTGCCCCCCACCGATGTACTTCGATTGGGACCTTCTGATGTGTA
TGAACCTATCGACAATATGTACAGCTCTGCAATGTCCCAATCTGACGGCC
CTAACCAATGGAACGATAAGTCCGGTCGGGCAGCACTATCACACTGACGT
GGTTACGTTCACCTGTTACCCGGGGTACGAGCTGGACGGAGCCTCTAGTG
CGACTTGTGACGCTAACCTAACATGGAGCCATCCTATTCCAACATGCAGA
GATGTTTATGAATGCACAGCTGGGAGTCCTACCTGCAGCCCACAAGCCTC
CTGTACCAACACAGTTGGTAGCTTTGCCTGTACTTGTAATTCAGGTTATA
GCGGCAACGGTTTCACTTGTACTGATGAGAATGAATGTATAGATGGGAGC
CACACATGTGACCTCGACGCTATCTGTACCAACACACCAGGCAATTTTGC
CTGCACCTGCAAGTCAGGCTACAGTGGTGATGGTCTAACCTGCACCGATG
ACAACGAATGTGCAGATGGTAACCACAACTGCAGCCCCCAGGCCTCCTGT
AAAAATACACCAGGCAGCTTTAACTGTTCTTGTAACTTAGGCTACAGCGG
CGACGGTGTCACGTGTGCTGATAATAATGAATGCACAGATGGGACCCACG
ACTGCAGTCCTGATGCGTCCTGTACCAATACACAAGGCAGCTTCTTATGT
ACTTGTAACACAGGCTACAGCGGCGCACCAGTCGACCCGGTCTGTGCAGA
TGGGCAGATAAAATGCGATAAGGTACCAGCTGGACTGTACCCAGACCTGA
GTGACTGTACCTGGTATTACGAGTGCCCAGACACGACACGCGGAAACGAC
CCGGCACATCAGCATTGCCCCCCACCGATGTACTTCGATTGGGACCTTCT
GATGTGTATGAACCTATCGACAATATGTACAGCTCTGCAATGTCCCAATC
TGACGGCCCTAACCAATGGAACGATAAGTCCGGTCGGGCAGCACTATCAC
ACTGACGTGGTTACGTTCACCTGTTACCCGGGGTACGAGCTGGACGGAGC
CTCTAGTGCGACTTGTGACGCTAACCTAACATGGAGCCATCCTATTCCAA
CATGCAGAGATGTTTATGAATGCACAGCTGGGAGTCCTACCTGCAGCCCA
CAAGCCTCCTGTACCAACACAGTTGGTAGCTTTGCCTGTACTTGTAATTC
AGGTTATAGCGGCAACGGTTTCACTTGTACTGATGAGAATGAATGTATAG
ATGGGAGCCACACATGTGACCTCGACGCTATCTGTACCAACACACCAGGC
AATTTTGCCTGCACCTGCAAGTCAGGCTACAGTGGTGATGGTCTAACCTG
CACCGATGACAACGAATGTGCAGATGGTAACCACAACTGCAGCCCCCAGG
CCTCCTGTAAAAATACACCAGGCAGCTTTAACTGTTCTTGTAACTTAGGC
TACAGCGGCGACGGTGTCACGTGTGCTGATAATAATGAATGCACAGATGG
GACCCACGACTGCAGTCCTGATGCGTCCTGTACCAATACACAAGGCAGCT
TCTTATGTACTTGTAACACAGGCTACAGCGGCGCACCAGTCGACCCGGTC
TGTGCAGATGGGCAGATAAAATGCGATAAGGTACCAGCTGGACTGTACCC
AGACCTGAGTGACTGTACCTGGTATTACGAGTGCCCAGACACGACACGCG
GAAACGACCCGGCACATCAGCATTGCCCCCCACCGATGTACTTCGATTGG
GACCTTCTGATGTGTATGAACCTATCGACAATATGTACAGCTCTGCAATG
TCCCAATCTGACGGCCCTAACCAATGGAACGATAAGTCCGGTCGGGCAGC
ACTATCACACTGACGTGGTTACGTTCACCTGTTACCCGGGGTACGAGCTG
GACGGAGCCTCTAGTGCGACTTGTGACGCTAACCTAACATGGAGCCATCC
TATTCCAACATGCAGAGATGTTTATGAATGCACAGCTGGGAGTCCTACCT
GCAGCCCACAAGCCTCCTGTACCAACACAGTTGGTAGCTTTGCCTGTACT
TGTAATTCAGGTTATAGCGGCAACGGTTTCACTTGTACTGATGAGAATGA
ATGTATAGATGGGAGCCACACATGTGACCTCGACGCTATCTGTACCAACA
CACCAGGCAATTTTGCCTGCACCTGCAAGTCAGGCTACAGTGGTGATGGT
CTAACCTGCACCGATGACAACGAATGTGCAGATGGTAACCACAACTGCAG
CCCCCAGGCCTCCTGTAAAAATACACCAGGCAGCTTTAACTGTTCTTGTA
ACTTAGGCTACAGCGGCGACGGTGTCACGTGTGCTGATAATAATGAATGC
ACAGATGGGACCCACGACTGCAGTCCTGATGCGTCCTGTACCAATACACA
AGGCAGCTTCTTATGTACTTGTAACACAGGCTACAGCGGCGCACCAGTCG
ACCCGGTCTGTGCAGATGGGCAGATAAAATGCGATAAGGTACCAGCTGGA
CTGTACCCAGACCTGAGTGACTGTACCTGGTATTACGAGTGCCCAGACAC
GACACGCGGAAACGACCCGGCACATCAGCATTGCCCCCCACCGATGTACT
TCGATTGGGACCTTCTGATGTGTATGAACCTATCGACAATATGTACAGCT
CTGCAATGTCCCAATCTGACGGCCCTAACCAATGGAACGATAAGTCCGGT
CGGGCAGCACTATCACACTGACGTGGTTACGTTCACCTGTTACCCGGGGT
ACGAGCTGGACGGAGCCTCTAGTGCGACTTGTGACGCTAACCTAACATGG
AGCCATCCTATTCCAACATGCAGAGATGTTTATGAATGCACAGCTGGGAG
TCCTACCTGCAGCCCACAAGCCTCCTGTACCAACACAGTTGGTAGCTTTG
CCTGTACTTGTAATTCAGGTTATAGCGGCAACGGTTTCACTTGTACTGAT
GAGAATGAATGTATAGATGGGAGCCACACATGTGACCTCGACGCTATCTG
TACCAACACACCAGGCAATTTTGCCTGCACCTGCAAGTCAGGCTACAGTG
GTGATGGTCTAACCTGCACCGATGACAACGAATGTGCAGATGGTAACCAC
AACTGCAGCCCCCAGGCCTCCTGTAAAAATACACCAGGCAGCTTTAACTG
TTCTTGTAACTTAGGCTACAGCGGCGACGGTGTCACGTGTGCTGATAATA
ATGAATGCACAGATGGGACCCACGACTGCAGTCCTGATGCGTCCTGTACC
AATACACAAGGCAGCTTCTTATGTACTTGTAACACAGGCTACAGCGGCGC
ACCAGTCGACCCGGTCTGTGCAGATGGGCAGATAAAATGCGATAAGGTAC
CAGCTGGACTGTACCCAGACCTGAGTGACTGTACCTGGTATTACGAGTGC
CCAGACACGACACGCGGAAACGACCCGGCACATCAGCATTGCCCCCCACC
GATGTACTTCGATTGGGACCTTCTGATGTGTATGAACCTATCGACAATAT
GTACAGCTCTGCAATGTCCCAATCTGACGGCCCTAACCAATGGAACGATA
AGTCCGGTCGGGCAGCACTATCACACTGACGTGGTTACGTTCACCTGTTA
CCCGGGGTACGAGCTGGACGGAGCCTCTAGTGCGACTTGTGACGCTAACC
TAACATGGAGCCATCCTATTCCAACATGCAGAGATGTTTATGAATGCACA
GCTGGGAGTCCTACCTGCAGCCCACAAGCCTCCTGTACCAACACAGTTGG
TAGCTTTGCCTGTACTTGTAATTCAGGTTATAGCGGCAACGGTTTCACTT
GTACTGATGAGAATGAATGTATAGATGGGAGCCACACATGTGACCTCGAC
GCTATCTGTACCAACACACCAGGCAATTTTGCCTGCACCTGCAAGTCAGG
CTACAGTGGTGATGGTCTAACCTGCACCGATGACAACGAATGTGCAGATG
GTAACCACAACTGCAGCCCCCAGGCCTCCTGTAAAAATACACCAGGCAGC
TTTAACTGTTCTTGTAACTTAGGCTACAGCGGCGACGGTGTCACGTGTGC
TGATAATAATGAATGCACAGATGGGACCCACGACTGCAGTCCTGATGCGT
CCTGTACCAATACACAAGGCAGCTTCTTATGTACTTGTAACACAGGCTAC
AGCGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000023 | genome | Sc0000023:1836626..1838768 - |
Properties
| Property Name | Value |
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| Transcript id | BL96911_cuf5 |
| Biotype | protein_coding |
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