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transcript:BL96910_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96910_cuf0
Unique Nametranscript:BL96910_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96910_cuf0

>transcript:BL96910_cuf0-protein ID=transcript:BL96910_cuf0-protein|Name=transcript:BL96910_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=140bp
MCPCRTGGSVSLVYEDPSGSAGLSTPDKIGLAVGVSVALAALAGLGALLM
FCFKKKGPYRPPTAKPRRSIVSPIVDSFETNIYSASMDDAWSHRVGKRGP
QLNRFRDPDAVYGRLSYSPPPSTASSTSTRESWLPEPYVN
Run BLAST on NCBI

mRNA from alignment at Sc0000023:1822748..1826621-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96910_cuf0 ID=transcript:BL96910_cuf0|Name=transcript:BL96910_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3874bp|location=Sequence derived from alignment at Sc0000023:1822748..1826621- (Branchiostoma lanceolatum)
GATGGAGTTCAGCGGCGTTGACTTTGAGAACTTGACAAGTCAGCATTCTT TCCCGGTGAATCAGCTTCTTCCGGCTCTACGAGAAACGCTGAGGAGTGTC GGCATCTCCGAGCCCTGTGTGGCCTCAAGCAGGATACTACTAAGGAGAAA GGTAGATCATTTTTCTGGCTCAAAGACTACATGCTGCATCAAAGGTTTTC AACAGGAAACCTATATGATACGTTGTTAAAGTGGGAGATCAACAGTACAG AAGATTTGATAAGAAGTCTGTCTCTCTCTCCAATGTCTACATCAGGTTTT CTATAGATTTTATGCCATGTGTTCGAACGTTACTCTGTGTCCAACGGCAG CATCTCGTTCTCTATATAGATTAAATAATTGGTGAATAAGAATATCAGTG TGCTTTTCTGTGTGCTTTAAAGAGTTTAAAGGATCATTAGTCTGCAGTCA TCAAATGATGACGTTTGAGGTCAGCTGTAGCACAAAAACACACACCTTTT TATCTTTTCACTATAAACCTACGTCTGCAGGATCACATCAAATTTTCGAT GTCGAAAGAACCAGACAGCGCGATCAACCTCACAACAGAAGTCGAGAAGT TAGACTCAGCAGCAGTGCTGCAACTCAATCTTCATTCAGTAAGTGTTAAA GAGGCCGCATACGATTAGCAACACTCGATTGTTACACCATATCAAAGGCT TATGCTACCCTTTATAGCATTAGTAATTAGGATTTTAACGTTTATTCTAA ACCTCTATTTTGAACCATGCATCGGTTTAATAGTTCTTGCCATACATTTT TCCGTGTACAATTGTCGTGCAATAAAGTTCTTCTACATTTCACGACCTTT GTATTATCTTAATCTCAGAACTGCACTCTTGTACCGATGCGTCTTTTTAA GCACCTGACATTGGCATTGAGAATTAGAAAGTACATGTGACTCCCAAAGA TGTAGGCTCTGACTTGAGAGTCAATTGGGTGACTTGGCTGTGTTGCAGGT GTTCACTGGTGACGTCACCCGTTACGATGGGACCTTTGACAGCATCTGCC CACCACTATCACCAGAAGAAATGTGTCCCTGTCGCACAGGAGGCAGCGTT TCTCTCGTGGTGAGCCGAACTCTCCAAAGTGGGGGACCATAGATTTGATC TTAAAGGGGCCCAAAGCAATATTAAGGCGTTGAAAGTCGTATTTTCGAAA TCAATTTTCTAGTGATTTCTTCCCATAGTAAGTTTAAACATCGGAGGTTT TAAACATCTAAAGTATAAAATAATGATGCAAATGTGCTAATATGGGAAAG CAAATGTCACTTTCATACAGATTGCCCTATCCAGAATACTTCTAGGTTCA TCCCCTGAAATCACTTAGGTCACCTTTAAACCACAGTGTATACACTTGGA CCTATGATGTGTCTTGTACGTGCGTAAGTGCACAAAACGTCAAATCAGTC GGTAGCCTTGCAGCAACTGGGCATTACGGTATGATTCCGCTGTCCATAAA ACGTTCATAAGCAGTAGAAAGAGTAAGATATTGCTAATATCAATACCATC ATAATGTTATGAATTTAGACGTCTGTTCCGGTTGCTATCATTGTAACATG TGCTAATAGCAGCTAATAAATATTTCCTCGTAATGATAGGGAATTGGAGA GATAAGTTGTCAGCGCAGCCTTCAGATTCAGTCTGCCAACTCATCATAAA TACCAGTATTGTGCCCATGCCCTCTTTTCTAACTCGTATGACTCATTTCC ATTATAGTACGAGGACCCATCAGGCAGTGCGGGACTGTCCACTCCTGACA AAATCGGGTTGGCTGTTGGCGTCTCCGTAGCTCTAGCAGCCCTGGCAGGA CTCGGGGCGCTTCTGATGTTTTGCTTCAAGAAGAAAGGACCGTACCGGCC ACCGACAGCCAAACCGCGTAGGAGTATCGTCTCTCCCATCGTCGACTCGT TCGAGACAAACATCTATAGCGTAAGTAGTTCCCTTTGTATTGGATGGATT CGGTCAGACCTGATATCGTTATTTTTCCCTTTTGTATCATAAAAAAAAGT TGCTATGTGAATTGTTCTTGATTGCTTCTGTCGAACATCCTAAAAAGTTT TTTTGGAAATTTGCAAATTTTAACGTGAAATGACATCAAATGTTGCCTGT GCTGATTGTTAGTTAGAAATGTATCATGGCTACACTGCACACATTGTGTA GATATGTTTTCAATAGTAAGATACAGACATTTTCTTTCGGTTGCGTTTTT TTATATGATGACTTTTGAACTATTTGGATTATACATTGCTATTGTAATTC ATACCCTATATCTCTATAAATTCCCAAACTAGGCAACCAAATTCATGTAT GAAATCTAATCTACCTAACGATACTTACGTCAAAAATGGTTTTTGAAGTC TGGTTGAGAGAAGATTGGGGCGCCATGATGGAAAGGTCACTTTGTTTTTA TTTGAGAACAGCATATTTCTTTACAACAAGTTTCATCAACTCAGATAAAC TTCATTATCAATTCAGATCATGATAATGTTTATTAGTAATCATTGATACA AAGACGAATTACAAAAGTAGAATAGCAGAAGTGTGAGCAGTTTGCGAACA AAACAGAAACCCAAAAACTCTTACTGCAAGTCATGCCTAATCTCCAAGCA GATCTCCACCAGGGCGAAATCATAATATCGGGGGCTGACTGAAGATTTTG GCTGGCTGATATTACAATTCTACTCCCGTGGAGATCCGCTTGGAGATTAA GTCATGCCGTTGGTTTGTTGCTACAGGCTTCCATGGATGACGCGTGGAGC CACAGAGTGGGTAAGAGGGGACCTCAGCTGAACCGGTTCCGGGACCCTGA TGCTGTGTACGGCCGGCTGTCGTACTCACCACCTCCCAGCACTGCCAGTT CCACATCAACGAGGGAGAGCTGGCTTCCTGAACCCTATGTTAACTAGTCC ATCTACGTCTTCTAACACTGCAGCAAAACTAATGTATGGGCGTGAGGGGA TGTGCTTTTTATAAGTTTGTTAGAAGAGAAAACACGATTTCTGAAATTGC TACTAATTCAATTAGTATCAGAAGCATTACAATCCTGCAATGTACGGGCA AGTAATCGTGGCCGTATTTGCCAAAATGTGTGCAACCACAGCAAATAACA TTTCAAGGAATTCAAAGCAAAAAAACGCATATATAATGAAACTATCTATT TTTGGCAAAATTTCTGACATTTCATTCCTATTGAGTCGTTCTCTGTCTGT GTATACTGTGTGCTGCGTGCATGGCTATGAGCTGGGAGACCTGAGCAGAT ATAATATAGCTTTGCATAGTGCCTAAAGATGACCACGACGCATGTTAAGA GTATTTAACAAAGGCAGGCCATGCAACAGTTTCTATATGTTATTGTAATG TGTCACCAATATTCAAGCTTCGTACGGCGCATCTGAAGCTCGCGTCGAAA TATCAAAACTAAACCTCCTATCACGTAGCGTTAAGGAAAGCTTATATACA TACATGCAATTTAGATGACCTCTTGATATTATTTTGACAATAATCTGGCC TTGCTCTAAAACCCACGTTAAATGCTAGATACATATAAACGCATCTATTG TTGTTGGAATAAAAAGTTCAAACCGACTAGACGTGCTCATCTGACATTAT TGGACCGTGATTTAAAACACATATCGACTAGCTAGCTTTAACAAATGATC AATCCACGAATGGGAAAATGCGAACACTAGAAGGAAAGGGCAATACATAT CTGTATCTAAAGTGATAGGAAACGAGTCGTTAAGTGTTAGTATTGTCGCC GGTCTAGCAGACTAAAGCAGTCATCCCGGCATGGTGTGAAATTTTGACCT GAAATATACAAACACATTGACTGA

Coding sequence (CDS) from alignment at Sc0000023:1822748..1826621-

>transcript:BL96910_cuf0 ID=transcript:BL96910_cuf0|Name=transcript:BL96910_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1269bp|location=Sequence derived from alignment at Sc0000023:1822748..1826621- (Branchiostoma lanceolatum)
ATGTGTCCCTGTCGCACAGGAGGCAGCGTTTCTCTCGTGTACGAGGACCC
ATCAGGCAGTGCGGGACTGTCCACTCCTGACAAAATCGGGTTGGCTGTTG
GCGTCTCCGTAGCTCTAGCAGCCCTGGCAGGACTCGGGGCGCTTCTGATG
TTTTGCTTCAAGAAGAAAGGACCGTACCGGCCACCGACAGCCAAACCGCG
TAGGAGTATCGTCTCTCCCATCGTCGACTCGTTCGAGACAAACATCTATA
GCGCTTCCATGGATGACGCGTGGAGCCACAGAGTGGGTAAGAGGGGACCT
CAGCTGAACCGGTTCCGGGACCCTGATGCTGTGTACGGCCGGCTGTCGTA
CTCACCACCTCCCAGCACTGCCAGTTCCACATCAACGAGGGAGAGCTGGC
TTCCTGAACCCTATGTTAACTAGATGTGTCCCTGTCGCACAGGAGGCAGC
GTTTCTCTCGTGTACGAGGACCCATCAGGCAGTGCGGGACTGTCCACTCC
TGACAAAATCGGGTTGGCTGTTGGCGTCTCCGTAGCTCTAGCAGCCCTGG
CAGGACTCGGGGCGCTTCTGATGTTTTGCTTCAAGAAGAAAGGACCGTAC
CGGCCACCGACAGCCAAACCGCGTAGGAGTATCGTCTCTCCCATCGTCGA
CTCGTTCGAGACAAACATCTATAGCGCTTCCATGGATGACGCGTGGAGCC
ACAGAGTGGGTAAGAGGGGACCTCAGCTGAACCGGTTCCGGGACCCTGAT
GCTGTGTACGGCCGGCTGTCGTACTCACCACCTCCCAGCACTGCCAGTTC
CACATCAACGAGGGAGAGCTGGCTTCCTGAACCCTATGTTAACTAGATGT
GTCCCTGTCGCACAGGAGGCAGCGTTTCTCTCGTGTACGAGGACCCATCA
GGCAGTGCGGGACTGTCCACTCCTGACAAAATCGGGTTGGCTGTTGGCGT
CTCCGTAGCTCTAGCAGCCCTGGCAGGACTCGGGGCGCTTCTGATGTTTT
GCTTCAAGAAGAAAGGACCGTACCGGCCACCGACAGCCAAACCGCGTAGG
AGTATCGTCTCTCCCATCGTCGACTCGTTCGAGACAAACATCTATAGCGC
TTCCATGGATGACGCGTGGAGCCACAGAGTGGGTAAGAGGGGACCTCAGC
TGAACCGGTTCCGGGACCCTGATGCTGTGTACGGCCGGCTGTCGTACTCA
CCACCTCCCAGCACTGCCAGTTCCACATCAACGAGGGAGAGCTGGCTTCC
TGAACCCTATGTTAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96910gene:BL96910Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96910_cuf0transcript:BL96910_cuf0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96910_cuf0-E1BL96910_cuf0-E1-1564476830-155665Branchiostoma lanceolatumexon
BL96910_cuf0-E2BL96910_cuf0-E2-1564476830-155663Branchiostoma lanceolatumexon
BL96910_cuf0-E3BL96910_cuf0-E3-1564476830-155661Branchiostoma lanceolatumexon
BL96910_cuf0-E4BL96910_cuf0-E4-1564476830-155658Branchiostoma lanceolatumexon
BL96910_cuf0-E5BL96910_cuf0-E5-1564476830-155656Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000023genomeSc0000023:1822748..1826621 -
Properties
Property NameValue
Transcript idBL96910_cuf0
Biotypeprotein_coding