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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96909_cuf1 >transcript:BL96909_cuf1-protein ID=transcript:BL96909_cuf1-protein|Name=transcript:BL96909_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
VVDLGVQKNLLGLVGCCTVVRDHLYLITEFMPYGDLKSFLRKCRQLKEAS
DEPRDDIYNFEVIQMYQVARQIARGMDHISRSRYIHGDLAARNVLVGERL
TVKISDFGLAEDIYSRGYRRQNRLQMVPWKWMAPERMQGGQAYTTQSDVW
SFGIVLYEISSLGGDPYPDVPMAQLKERLQTGLRMPQPEGCSDGMYDLMQ
QCWRWQPIERPSFRTLELDLDKQLAFYGPEYARATPCT Run BLAST on NCBI mRNA from alignment at Sc0000023:2397788..2402196+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96909_cuf1 ID=transcript:BL96909_cuf1|Name=transcript:BL96909_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4409bp|location=Sequence derived from alignment at Sc0000023:2397788..2402196+ (Branchiostoma lanceolatum)
GTTGTGGACCTGGGGGTTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCTG
CACGGTGGTGCGAGACCATCTGTATCTCATCACGGAGTTCATGCCGTACG
GAGACCTGAAGAGCTTCTTAAGGAAATGCCGGCAGGTGAGCCGCATTGGT
GTCGTCTTCTGAAAGTTATCATGAAAGTATACAAGCTAAGGCCGAGACTC
AATAATGTTTTCTGAGAAGATGCCAATTTCCAAATGCCAAGTGTTATAAG
GTCACTTGTTTTTACAGCTGAAAGAGGCCTCTGATGAACCTCGGGACGAC
ATCTACAACTTCGAGGTGATACAGATGTACCAGGTGGCTCGGCAGATCGC
TAGAGGCATGGTGAGTACATGTACTTACAGGTTCCGCGTATACAACGACA
TACCAGATATGCCAGGTGCTGCAGATGTGCCTGGTGCTGAAAATGTGCTA
TGTGTTGCAGATGTACTAGGTGCTGCATGTGCCAGGCAGATGTATGGCCA
TGTATATGGAAAAGACGTCAATAATCCATACACATATAAGCACCTCTGGA
TTATGATATGAAGATGCATCCCTCCTCAGCCCCTTATACAGCAATCCACT
CACCAATTGCCTGGATTCTAGACTAGACTGATATGATGCAATGTACCAGT
TTAGTGACTTGTATGAATCAATGTTCATGTTTCAGGATCACATCTCCCGG
TCCCGTTACATCCACGGTGACCTGGCCGCCCGGAACGTGCTGGTCGGGGA
GAGGCTGACGGTGAAGATTTCCGACTTCGGGCTGGCAGAAGACATTTACA
GCCGAGGCTACCGTCGGCAGAACCGGCTACAAATGGTGCCTTGGAAATGG
ATGGCGCCTGAGCGGATGCAGGGCGGGCAGGCCTACACCACACAGAGCGA
TGTGTGAGTAATTTTGTCACAATATTTGCAGTGTAACTCTGATACTCAAA
TCCTAAGTCAAACTCTAACTTTACTCTAGAAAGAGTGCATTGTAACTGAG
TCTATCCCATTCTCTAAGAGACCCTATCGAAAAAGACCCATATCTTTCGA
GTTCACATTAGAATTTTGAGTTTGACATACTTTCTCGTTTCCATGTCCTA
ATATCAACTCCCCTGACAGGTGGTCCTTCGGAATAGTGCTGTACGAGATC
AGTTCGCTAGGGGGCGATCCTTATCCTGACGTGCCGATGGCCCAGCTGAA
AGAACGCCTGCAGACTGGACTGAGGATGCCCCAACCCGAGGGCTGTTCTG
ACGGCATGTAAGTCTGGTAGTTTCTGCACCCTGTTCAAGAGTTTGTTTAG
TGGGAACCATGCAGTAAGTAGAAAAAATGACACATCTACCAAGAAAAAAT
ATAAACACATAATACAATAGAATTATACTGGTGACTTTTTGCCTTATTCT
GCTCGTCATCAACCCGCATCCCATAGGTATTATAACCGTGCAATTGTAAA
ATATTGTAATGCAGCTTACAAACTATTCCCAAAAGAACATTCAAACGTCA
TAGCACAGTTTCTGTCAAACGTGATAAACAGTTGCAATGTATATGAATAA
CAACAAAGACTCGAAAGGGTAATCTGGAGCTACGGTAGCTTCAGTCCATA
CGACAATCGCTAGATGTCGCTTTCTCCGTTATCTGCAGGTACGACCTGAT
GCAGCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCGTCCTTCCGCACGC
TGGAGCTCGACCTGGACAAGCAGCTCGCCTTCTACGGACCCGAGTACGCC
AGAGCTACCCCCTGTACTTAAAACGACGCTAATCCGTACAGCATAATATA
CCTTACCGACGTACCAAAGAATTGAATATAGCTCGTACATACAAATAGCA
TTGACCGTCAAAAGATTCTATAAGTAAGTCGAAAATAGTTCATACATTAG
CTAGAACAGAGGATTTTTTTAATTATTCAATACCACACTGTACTTGAGCT
TAGATTAAAGATCTCAGTGTCCCGAACAAAACGCCGTTTTCAGATTTCAA
ATCCGATGAACCCGAGTTGAGATATTGAATTTTGAAAGAATAAATTTTGA
CATTTTTGGTGAAAACTTAATCATTAGTCCCATGGGTCTGATATGGCACC
GCAGGGAGTATATTCACTGTAATAAAGGCATTGTGTACAATAGTATCATG
CATTTGGGGTAGTCAAGTTTTGATGCTTCACAACAGAAATTCTTGGCACA
ATTTGCTTATGCAAGTGTCAGCTGCCACAAGATGTCAAGCAAATTAGCCA
TTACAACTTATTATCTTATTTTTGATTAGCATATCTGCATACTAATTAGG
CATATTTGCTCTTCTTCTGCAGGTTTCTCTACTACCACATTGTATATAAC
AACTAATATAACAACTGGTACTTGTCACATGCCTAGCAATAAGATAATCT
CTATAAGCTCTGGTATTGTTGATTAATGACTAATTAGCATATTTGCATAT
TAATTAGGAAGACATGTATAACACAGGCCATTTCTACATATTGGCCTATG
CATTTCTCTTTGATCTCATTTCTATGCAAACTAATAGTGACACAGGTAGT
TGTCACAATATGTAGACCAAATAGATAATCTCTGACATTCTTAATTAATT
AGCATATTTGCATACAAATGAGGACAACAAAGTGCATGACCATGACTGTT
TCTACCTCTCAGCCTACACAATTATTGTCTGCTCTCATTTCTTTTCAAAA
TGAACGTGGGACTGTTAGCTGTCACAATATTTCTATTTCTAGTTGATGAA
TAATCTCTGGAATTCTTAAGTAATCAATAATTAGCATATTTGCATATTAA
TTAGTAAAATAAAGCACATTATTAAGGCTTCTTTCACCTAGCATACAATG
TATTCTCCTCTGCTTTCATCAAAATAGAAAAAATAATACCAAAAATCTCA
AGTATTCTTATTTAATGACTGCTTGTCATAATCGTCCGCATACTAATTAG
TCAAATTAATTGGACAATGAATGACACTTCCATGTATGTACATTTATTAC
ATTTTAATGCAATCATAAAAAATGTAACTCTTGCCTTTTCCAAAACAATC
CTAAGCATGGAATGTAGGTTTAACATGCCAAGAGTCTCATCAATTGATTA
GAGCTGATACAAAAGCCTGCTCTCAGAATAATTCTCTACTCTGATTACTG
ATTACTCTATATCATAGCTCTGTACATCAAATTCAAAAGCCAGAAGAGAA
TCTTTTTAATTCACATATTCTTAGAATACTTCTTGGCAAGGATTACTCTT
GCTAAACTTAATCACTTAATCAGACCTCTGTAAATTGAATTCAAAAGCTA
GGAGACAATCACAGATTGCCTTAAATTAGACAAATCTCTTTTGAAATTCA
CATATTCTCATAATGATTATTGGACAGTAGTCAACTCGGTTTCTCCCACT
CAGGACAGGAAAATCAGGGCTGACCCTCAGGACACACCTAAGCATATAAG
GACAATTAGTGCAAGGCAACAAGCCACCAGGATAAGATAAACAAAATCTT
GTATGGGACTTAACTACTTTACAAGAGATATTGACAAGTATATATCTTTA
ATAATACTGTACATGCAAAATAAATTGATATCAGACACCTCAGACCAAAC
TCATCGATTCATCAGCAAAACTCCTTGATACTGAAAACTTAATCCCATCT
ACCTTCATAGTATGTGCGCAGTTTACGTATTCCCAAGACGAGAAACGTGT
AAGAAGCCACATTATAATCAATGTTCGCCCCGCCCCCTCGCCGCGTCCCG
CCCCAGTACCGCGGCTTCGCGCCATGGCACCGCGCGGAAAACACAATTCC
CACCGCATTTATCCCGAACTATATGCAGTAAATCTGGTGTCAAATTAAAG
CTAAGAACATGCTTTATCGTATTTCCGGTGCCGCAAATTGATCATTTACA
TCTATAGGGGCGAAAAACGTGATCAAAGTTTTCAAAATCGTCATAAATTG
ACTTACCTTGCACATAGAAATTTGCGGCACCCGCCAAACTGTTCCTAAAA
TCCTCTAGAACGTGTTCGTGACGTTTATACAGACCATAATATTCGTTTGA
CCCGGTGGAAATTCGGTCAAAGTGCGGAGTTCGATTCCGCCCTTCGCTGA
AATCGGGCCCGCGGCGGACGCCGCTAGCGGGGCGGGTGTGTCTGCTCGTT
AATCACGCTCTAACTCAACACCAGTAACTTGTATTTATAAGAAATTCCGT
ACACATAGAGATAAGATATTGATGGTAAAACACACAAAATCTGGTGCTTG
TAAGTATTATACTTTTTTTTTCACAATTTTTTTAATTGACCAACTTAGGC
CCGTAATACGGGGGAGTCAGATTTCGCACGTTATTACAAGGTGAATTGCG
CTAGCTACATACATTCGATGGCAAGAAAGATAAATCGTTGTACCATTGGC
AGGTTTTTG Coding sequence (CDS) from alignment at Sc0000023:2397788..2402196+ >transcript:BL96909_cuf1 ID=transcript:BL96909_cuf1|Name=transcript:BL96909_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3585bp|location=Sequence derived from alignment at Sc0000023:2397788..2402196+ (Branchiostoma lanceolatum)
GTTGTGGACCTGGGGGTTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCTG
CACGGTGGTGCGAGACCATCTGTATCTCATCACGGAGTTCATGCCGTACG
GAGACCTGAAGAGCTTCTTAAGGAAATGCCGGCAGCTGAAAGAGGCCTCT
GATGAACCTCGGGACGACATCTACAACTTCGAGGTGATACAGATGTACCA
GGTGGCTCGGCAGATCGCTAGAGGCATGGATCACATCTCCCGGTCCCGTT
ACATCCACGGTGACCTGGCCGCCCGGAACGTGCTGGTCGGGGAGAGGCTG
ACGGTGAAGATTTCCGACTTCGGGCTGGCAGAAGACATTTACAGCCGAGG
CTACCGTCGGCAGAACCGGCTACAAATGGTGCCTTGGAAATGGATGGCGC
CTGAGCGGATGCAGGGCGGGCAGGCCTACACCACACAGAGCGATGTGTGG
TCCTTCGGAATAGTGCTGTACGAGATCAGTTCGCTAGGGGGCGATCCTTA
TCCTGACGTGCCGATGGCCCAGCTGAAAGAACGCCTGCAGACTGGACTGA
GGATGCCCCAACCCGAGGGCTGTTCTGACGGCATGTACGACCTGATGCAG
CAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCGTCCTTCCGCACGCTGGA
GCTCGACCTGGACAAGCAGCTCGCCTTCTACGGACCCGAGTACGCCAGAG
CTACCCCCTGTACTTAAGTTGTGGACCTGGGGGTTCAGAAGAACCTGCTG
GGTCTGGTCGGCTGCTGCACGGTGGTGCGAGACCATCTGTATCTCATCAC
GGAGTTCATGCCGTACGGAGACCTGAAGAGCTTCTTAAGGAAATGCCGGC
AGCTGAAAGAGGCCTCTGATGAACCTCGGGACGACATCTACAACTTCGAG
GTGATACAGATGTACCAGGTGGCTCGGCAGATCGCTAGAGGCATGGATCA
CATCTCCCGGTCCCGTTACATCCACGGTGACCTGGCCGCCCGGAACGTGC
TGGTCGGGGAGAGGCTGACGGTGAAGATTTCCGACTTCGGGCTGGCAGAA
GACATTTACAGCCGAGGCTACCGTCGGCAGAACCGGCTACAAATGGTGCC
TTGGAAATGGATGGCGCCTGAGCGGATGCAGGGCGGGCAGGCCTACACCA
CACAGAGCGATGTGTGGTCCTTCGGAATAGTGCTGTACGAGATCAGTTCG
CTAGGGGGCGATCCTTATCCTGACGTGCCGATGGCCCAGCTGAAAGAACG
CCTGCAGACTGGACTGAGGATGCCCCAACCCGAGGGCTGTTCTGACGGCA
TGTACGACCTGATGCAGCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCG
TCCTTCCGCACGCTGGAGCTCGACCTGGACAAGCAGCTCGCCTTCTACGG
ACCCGAGTACGCCAGAGCTACCCCCTGTACTTAAGTTGTGGACCTGGGGG
TTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCTGCACGGTGGTGCGAGAC
CATCTGTATCTCATCACGGAGTTCATGCCGTACGGAGACCTGAAGAGCTT
CTTAAGGAAATGCCGGCAGCTGAAAGAGGCCTCTGATGAACCTCGGGACG
ACATCTACAACTTCGAGGTGATACAGATGTACCAGGTGGCTCGGCAGATC
GCTAGAGGCATGGATCACATCTCCCGGTCCCGTTACATCCACGGTGACCT
GGCCGCCCGGAACGTGCTGGTCGGGGAGAGGCTGACGGTGAAGATTTCCG
ACTTCGGGCTGGCAGAAGACATTTACAGCCGAGGCTACCGTCGGCAGAAC
CGGCTACAAATGGTGCCTTGGAAATGGATGGCGCCTGAGCGGATGCAGGG
CGGGCAGGCCTACACCACACAGAGCGATGTGTGGTCCTTCGGAATAGTGC
TGTACGAGATCAGTTCGCTAGGGGGCGATCCTTATCCTGACGTGCCGATG
GCCCAGCTGAAAGAACGCCTGCAGACTGGACTGAGGATGCCCCAACCCGA
GGGCTGTTCTGACGGCATGTACGACCTGATGCAGCAGTGTTGGCGCTGGC
AGCCCATCGAGCGGCCGTCCTTCCGCACGCTGGAGCTCGACCTGGACAAG
CAGCTCGCCTTCTACGGACCCGAGTACGCCAGAGCTACCCCCTGTACTTA
AGTTGTGGACCTGGGGGTTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCT
GCACGGTGGTGCGAGACCATCTGTATCTCATCACGGAGTTCATGCCGTAC
GGAGACCTGAAGAGCTTCTTAAGGAAATGCCGGCAGCTGAAAGAGGCCTC
TGATGAACCTCGGGACGACATCTACAACTTCGAGGTGATACAGATGTACC
AGGTGGCTCGGCAGATCGCTAGAGGCATGGATCACATCTCCCGGTCCCGT
TACATCCACGGTGACCTGGCCGCCCGGAACGTGCTGGTCGGGGAGAGGCT
GACGGTGAAGATTTCCGACTTCGGGCTGGCAGAAGACATTTACAGCCGAG
GCTACCGTCGGCAGAACCGGCTACAAATGGTGCCTTGGAAATGGATGGCG
CCTGAGCGGATGCAGGGCGGGCAGGCCTACACCACACAGAGCGATGTGTG
GTCCTTCGGAATAGTGCTGTACGAGATCAGTTCGCTAGGGGGCGATCCTT
ATCCTGACGTGCCGATGGCCCAGCTGAAAGAACGCCTGCAGACTGGACTG
AGGATGCCCCAACCCGAGGGCTGTTCTGACGGCATGTACGACCTGATGCA
GCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCGTCCTTCCGCACGCTGG
AGCTCGACCTGGACAAGCAGCTCGCCTTCTACGGACCCGAGTACGCCAGA
GCTACCCCCTGTACTTAAGTTGTGGACCTGGGGGTTCAGAAGAACCTGCT
GGGTCTGGTCGGCTGCTGCACGGTGGTGCGAGACCATCTGTATCTCATCA
CGGAGTTCATGCCGTACGGAGACCTGAAGAGCTTCTTAAGGAAATGCCGG
CAGCTGAAAGAGGCCTCTGATGAACCTCGGGACGACATCTACAACTTCGA
GGTGATACAGATGTACCAGGTGGCTCGGCAGATCGCTAGAGGCATGGATC
ACATCTCCCGGTCCCGTTACATCCACGGTGACCTGGCCGCCCGGAACGTG
CTGGTCGGGGAGAGGCTGACGGTGAAGATTTCCGACTTCGGGCTGGCAGA
AGACATTTACAGCCGAGGCTACCGTCGGCAGAACCGGCTACAAATGGTGC
CTTGGAAATGGATGGCGCCTGAGCGGATGCAGGGCGGGCAGGCCTACACC
ACACAGAGCGATGTGTGGTCCTTCGGAATAGTGCTGTACGAGATCAGTTC
GCTAGGGGGCGATCCTTATCCTGACGTGCCGATGGCCCAGCTGAAAGAAC
GCCTGCAGACTGGACTGAGGATGCCCCAACCCGAGGGCTGTTCTGACGGC
ATGTACGACCTGATGCAGCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCC
GTCCTTCCGCACGCTGGAGCTCGACCTGGACAAGCAGCTCGCCTTCTACG
GACCCGAGTACGCCAGAGCTACCCCCTGTACTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000023 | genome | Sc0000023:2397788..2402196 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96909_cuf1 |
| Biotype | protein_coding |
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