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transcript:BL96909_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96909_cuf1
Unique Nametranscript:BL96909_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96909_cuf1

>transcript:BL96909_cuf1-protein ID=transcript:BL96909_cuf1-protein|Name=transcript:BL96909_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
VVDLGVQKNLLGLVGCCTVVRDHLYLITEFMPYGDLKSFLRKCRQLKEAS
DEPRDDIYNFEVIQMYQVARQIARGMDHISRSRYIHGDLAARNVLVGERL
TVKISDFGLAEDIYSRGYRRQNRLQMVPWKWMAPERMQGGQAYTTQSDVW
SFGIVLYEISSLGGDPYPDVPMAQLKERLQTGLRMPQPEGCSDGMYDLMQ
QCWRWQPIERPSFRTLELDLDKQLAFYGPEYARATPCT
Run BLAST on NCBI

mRNA from alignment at Sc0000023:2397788..2402196+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96909_cuf1 ID=transcript:BL96909_cuf1|Name=transcript:BL96909_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4409bp|location=Sequence derived from alignment at Sc0000023:2397788..2402196+ (Branchiostoma lanceolatum)
GTTGTGGACCTGGGGGTTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCTG CACGGTGGTGCGAGACCATCTGTATCTCATCACGGAGTTCATGCCGTACG GAGACCTGAAGAGCTTCTTAAGGAAATGCCGGCAGGTGAGCCGCATTGGT GTCGTCTTCTGAAAGTTATCATGAAAGTATACAAGCTAAGGCCGAGACTC AATAATGTTTTCTGAGAAGATGCCAATTTCCAAATGCCAAGTGTTATAAG GTCACTTGTTTTTACAGCTGAAAGAGGCCTCTGATGAACCTCGGGACGAC ATCTACAACTTCGAGGTGATACAGATGTACCAGGTGGCTCGGCAGATCGC TAGAGGCATGGTGAGTACATGTACTTACAGGTTCCGCGTATACAACGACA TACCAGATATGCCAGGTGCTGCAGATGTGCCTGGTGCTGAAAATGTGCTA TGTGTTGCAGATGTACTAGGTGCTGCATGTGCCAGGCAGATGTATGGCCA TGTATATGGAAAAGACGTCAATAATCCATACACATATAAGCACCTCTGGA TTATGATATGAAGATGCATCCCTCCTCAGCCCCTTATACAGCAATCCACT CACCAATTGCCTGGATTCTAGACTAGACTGATATGATGCAATGTACCAGT TTAGTGACTTGTATGAATCAATGTTCATGTTTCAGGATCACATCTCCCGG TCCCGTTACATCCACGGTGACCTGGCCGCCCGGAACGTGCTGGTCGGGGA GAGGCTGACGGTGAAGATTTCCGACTTCGGGCTGGCAGAAGACATTTACA GCCGAGGCTACCGTCGGCAGAACCGGCTACAAATGGTGCCTTGGAAATGG ATGGCGCCTGAGCGGATGCAGGGCGGGCAGGCCTACACCACACAGAGCGA TGTGTGAGTAATTTTGTCACAATATTTGCAGTGTAACTCTGATACTCAAA TCCTAAGTCAAACTCTAACTTTACTCTAGAAAGAGTGCATTGTAACTGAG TCTATCCCATTCTCTAAGAGACCCTATCGAAAAAGACCCATATCTTTCGA GTTCACATTAGAATTTTGAGTTTGACATACTTTCTCGTTTCCATGTCCTA ATATCAACTCCCCTGACAGGTGGTCCTTCGGAATAGTGCTGTACGAGATC AGTTCGCTAGGGGGCGATCCTTATCCTGACGTGCCGATGGCCCAGCTGAA AGAACGCCTGCAGACTGGACTGAGGATGCCCCAACCCGAGGGCTGTTCTG ACGGCATGTAAGTCTGGTAGTTTCTGCACCCTGTTCAAGAGTTTGTTTAG TGGGAACCATGCAGTAAGTAGAAAAAATGACACATCTACCAAGAAAAAAT ATAAACACATAATACAATAGAATTATACTGGTGACTTTTTGCCTTATTCT GCTCGTCATCAACCCGCATCCCATAGGTATTATAACCGTGCAATTGTAAA ATATTGTAATGCAGCTTACAAACTATTCCCAAAAGAACATTCAAACGTCA TAGCACAGTTTCTGTCAAACGTGATAAACAGTTGCAATGTATATGAATAA CAACAAAGACTCGAAAGGGTAATCTGGAGCTACGGTAGCTTCAGTCCATA CGACAATCGCTAGATGTCGCTTTCTCCGTTATCTGCAGGTACGACCTGAT GCAGCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCGTCCTTCCGCACGC TGGAGCTCGACCTGGACAAGCAGCTCGCCTTCTACGGACCCGAGTACGCC AGAGCTACCCCCTGTACTTAAAACGACGCTAATCCGTACAGCATAATATA CCTTACCGACGTACCAAAGAATTGAATATAGCTCGTACATACAAATAGCA TTGACCGTCAAAAGATTCTATAAGTAAGTCGAAAATAGTTCATACATTAG CTAGAACAGAGGATTTTTTTAATTATTCAATACCACACTGTACTTGAGCT TAGATTAAAGATCTCAGTGTCCCGAACAAAACGCCGTTTTCAGATTTCAA ATCCGATGAACCCGAGTTGAGATATTGAATTTTGAAAGAATAAATTTTGA CATTTTTGGTGAAAACTTAATCATTAGTCCCATGGGTCTGATATGGCACC GCAGGGAGTATATTCACTGTAATAAAGGCATTGTGTACAATAGTATCATG CATTTGGGGTAGTCAAGTTTTGATGCTTCACAACAGAAATTCTTGGCACA ATTTGCTTATGCAAGTGTCAGCTGCCACAAGATGTCAAGCAAATTAGCCA TTACAACTTATTATCTTATTTTTGATTAGCATATCTGCATACTAATTAGG CATATTTGCTCTTCTTCTGCAGGTTTCTCTACTACCACATTGTATATAAC AACTAATATAACAACTGGTACTTGTCACATGCCTAGCAATAAGATAATCT CTATAAGCTCTGGTATTGTTGATTAATGACTAATTAGCATATTTGCATAT TAATTAGGAAGACATGTATAACACAGGCCATTTCTACATATTGGCCTATG CATTTCTCTTTGATCTCATTTCTATGCAAACTAATAGTGACACAGGTAGT TGTCACAATATGTAGACCAAATAGATAATCTCTGACATTCTTAATTAATT AGCATATTTGCATACAAATGAGGACAACAAAGTGCATGACCATGACTGTT TCTACCTCTCAGCCTACACAATTATTGTCTGCTCTCATTTCTTTTCAAAA TGAACGTGGGACTGTTAGCTGTCACAATATTTCTATTTCTAGTTGATGAA TAATCTCTGGAATTCTTAAGTAATCAATAATTAGCATATTTGCATATTAA TTAGTAAAATAAAGCACATTATTAAGGCTTCTTTCACCTAGCATACAATG TATTCTCCTCTGCTTTCATCAAAATAGAAAAAATAATACCAAAAATCTCA AGTATTCTTATTTAATGACTGCTTGTCATAATCGTCCGCATACTAATTAG TCAAATTAATTGGACAATGAATGACACTTCCATGTATGTACATTTATTAC ATTTTAATGCAATCATAAAAAATGTAACTCTTGCCTTTTCCAAAACAATC CTAAGCATGGAATGTAGGTTTAACATGCCAAGAGTCTCATCAATTGATTA GAGCTGATACAAAAGCCTGCTCTCAGAATAATTCTCTACTCTGATTACTG ATTACTCTATATCATAGCTCTGTACATCAAATTCAAAAGCCAGAAGAGAA TCTTTTTAATTCACATATTCTTAGAATACTTCTTGGCAAGGATTACTCTT GCTAAACTTAATCACTTAATCAGACCTCTGTAAATTGAATTCAAAAGCTA GGAGACAATCACAGATTGCCTTAAATTAGACAAATCTCTTTTGAAATTCA CATATTCTCATAATGATTATTGGACAGTAGTCAACTCGGTTTCTCCCACT CAGGACAGGAAAATCAGGGCTGACCCTCAGGACACACCTAAGCATATAAG GACAATTAGTGCAAGGCAACAAGCCACCAGGATAAGATAAACAAAATCTT GTATGGGACTTAACTACTTTACAAGAGATATTGACAAGTATATATCTTTA ATAATACTGTACATGCAAAATAAATTGATATCAGACACCTCAGACCAAAC TCATCGATTCATCAGCAAAACTCCTTGATACTGAAAACTTAATCCCATCT ACCTTCATAGTATGTGCGCAGTTTACGTATTCCCAAGACGAGAAACGTGT AAGAAGCCACATTATAATCAATGTTCGCCCCGCCCCCTCGCCGCGTCCCG CCCCAGTACCGCGGCTTCGCGCCATGGCACCGCGCGGAAAACACAATTCC CACCGCATTTATCCCGAACTATATGCAGTAAATCTGGTGTCAAATTAAAG CTAAGAACATGCTTTATCGTATTTCCGGTGCCGCAAATTGATCATTTACA TCTATAGGGGCGAAAAACGTGATCAAAGTTTTCAAAATCGTCATAAATTG ACTTACCTTGCACATAGAAATTTGCGGCACCCGCCAAACTGTTCCTAAAA TCCTCTAGAACGTGTTCGTGACGTTTATACAGACCATAATATTCGTTTGA CCCGGTGGAAATTCGGTCAAAGTGCGGAGTTCGATTCCGCCCTTCGCTGA AATCGGGCCCGCGGCGGACGCCGCTAGCGGGGCGGGTGTGTCTGCTCGTT AATCACGCTCTAACTCAACACCAGTAACTTGTATTTATAAGAAATTCCGT ACACATAGAGATAAGATATTGATGGTAAAACACACAAAATCTGGTGCTTG TAAGTATTATACTTTTTTTTTCACAATTTTTTTAATTGACCAACTTAGGC CCGTAATACGGGGGAGTCAGATTTCGCACGTTATTACAAGGTGAATTGCG CTAGCTACATACATTCGATGGCAAGAAAGATAAATCGTTGTACCATTGGC AGGTTTTTG

Coding sequence (CDS) from alignment at Sc0000023:2397788..2402196+

>transcript:BL96909_cuf1 ID=transcript:BL96909_cuf1|Name=transcript:BL96909_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3585bp|location=Sequence derived from alignment at Sc0000023:2397788..2402196+ (Branchiostoma lanceolatum)
GTTGTGGACCTGGGGGTTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCTG
CACGGTGGTGCGAGACCATCTGTATCTCATCACGGAGTTCATGCCGTACG
GAGACCTGAAGAGCTTCTTAAGGAAATGCCGGCAGCTGAAAGAGGCCTCT
GATGAACCTCGGGACGACATCTACAACTTCGAGGTGATACAGATGTACCA
GGTGGCTCGGCAGATCGCTAGAGGCATGGATCACATCTCCCGGTCCCGTT
ACATCCACGGTGACCTGGCCGCCCGGAACGTGCTGGTCGGGGAGAGGCTG
ACGGTGAAGATTTCCGACTTCGGGCTGGCAGAAGACATTTACAGCCGAGG
CTACCGTCGGCAGAACCGGCTACAAATGGTGCCTTGGAAATGGATGGCGC
CTGAGCGGATGCAGGGCGGGCAGGCCTACACCACACAGAGCGATGTGTGG
TCCTTCGGAATAGTGCTGTACGAGATCAGTTCGCTAGGGGGCGATCCTTA
TCCTGACGTGCCGATGGCCCAGCTGAAAGAACGCCTGCAGACTGGACTGA
GGATGCCCCAACCCGAGGGCTGTTCTGACGGCATGTACGACCTGATGCAG
CAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCGTCCTTCCGCACGCTGGA
GCTCGACCTGGACAAGCAGCTCGCCTTCTACGGACCCGAGTACGCCAGAG
CTACCCCCTGTACTTAAGTTGTGGACCTGGGGGTTCAGAAGAACCTGCTG
GGTCTGGTCGGCTGCTGCACGGTGGTGCGAGACCATCTGTATCTCATCAC
GGAGTTCATGCCGTACGGAGACCTGAAGAGCTTCTTAAGGAAATGCCGGC
AGCTGAAAGAGGCCTCTGATGAACCTCGGGACGACATCTACAACTTCGAG
GTGATACAGATGTACCAGGTGGCTCGGCAGATCGCTAGAGGCATGGATCA
CATCTCCCGGTCCCGTTACATCCACGGTGACCTGGCCGCCCGGAACGTGC
TGGTCGGGGAGAGGCTGACGGTGAAGATTTCCGACTTCGGGCTGGCAGAA
GACATTTACAGCCGAGGCTACCGTCGGCAGAACCGGCTACAAATGGTGCC
TTGGAAATGGATGGCGCCTGAGCGGATGCAGGGCGGGCAGGCCTACACCA
CACAGAGCGATGTGTGGTCCTTCGGAATAGTGCTGTACGAGATCAGTTCG
CTAGGGGGCGATCCTTATCCTGACGTGCCGATGGCCCAGCTGAAAGAACG
CCTGCAGACTGGACTGAGGATGCCCCAACCCGAGGGCTGTTCTGACGGCA
TGTACGACCTGATGCAGCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCG
TCCTTCCGCACGCTGGAGCTCGACCTGGACAAGCAGCTCGCCTTCTACGG
ACCCGAGTACGCCAGAGCTACCCCCTGTACTTAAGTTGTGGACCTGGGGG
TTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCTGCACGGTGGTGCGAGAC
CATCTGTATCTCATCACGGAGTTCATGCCGTACGGAGACCTGAAGAGCTT
CTTAAGGAAATGCCGGCAGCTGAAAGAGGCCTCTGATGAACCTCGGGACG
ACATCTACAACTTCGAGGTGATACAGATGTACCAGGTGGCTCGGCAGATC
GCTAGAGGCATGGATCACATCTCCCGGTCCCGTTACATCCACGGTGACCT
GGCCGCCCGGAACGTGCTGGTCGGGGAGAGGCTGACGGTGAAGATTTCCG
ACTTCGGGCTGGCAGAAGACATTTACAGCCGAGGCTACCGTCGGCAGAAC
CGGCTACAAATGGTGCCTTGGAAATGGATGGCGCCTGAGCGGATGCAGGG
CGGGCAGGCCTACACCACACAGAGCGATGTGTGGTCCTTCGGAATAGTGC
TGTACGAGATCAGTTCGCTAGGGGGCGATCCTTATCCTGACGTGCCGATG
GCCCAGCTGAAAGAACGCCTGCAGACTGGACTGAGGATGCCCCAACCCGA
GGGCTGTTCTGACGGCATGTACGACCTGATGCAGCAGTGTTGGCGCTGGC
AGCCCATCGAGCGGCCGTCCTTCCGCACGCTGGAGCTCGACCTGGACAAG
CAGCTCGCCTTCTACGGACCCGAGTACGCCAGAGCTACCCCCTGTACTTA
AGTTGTGGACCTGGGGGTTCAGAAGAACCTGCTGGGTCTGGTCGGCTGCT
GCACGGTGGTGCGAGACCATCTGTATCTCATCACGGAGTTCATGCCGTAC
GGAGACCTGAAGAGCTTCTTAAGGAAATGCCGGCAGCTGAAAGAGGCCTC
TGATGAACCTCGGGACGACATCTACAACTTCGAGGTGATACAGATGTACC
AGGTGGCTCGGCAGATCGCTAGAGGCATGGATCACATCTCCCGGTCCCGT
TACATCCACGGTGACCTGGCCGCCCGGAACGTGCTGGTCGGGGAGAGGCT
GACGGTGAAGATTTCCGACTTCGGGCTGGCAGAAGACATTTACAGCCGAG
GCTACCGTCGGCAGAACCGGCTACAAATGGTGCCTTGGAAATGGATGGCG
CCTGAGCGGATGCAGGGCGGGCAGGCCTACACCACACAGAGCGATGTGTG
GTCCTTCGGAATAGTGCTGTACGAGATCAGTTCGCTAGGGGGCGATCCTT
ATCCTGACGTGCCGATGGCCCAGCTGAAAGAACGCCTGCAGACTGGACTG
AGGATGCCCCAACCCGAGGGCTGTTCTGACGGCATGTACGACCTGATGCA
GCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCCGTCCTTCCGCACGCTGG
AGCTCGACCTGGACAAGCAGCTCGCCTTCTACGGACCCGAGTACGCCAGA
GCTACCCCCTGTACTTAAGTTGTGGACCTGGGGGTTCAGAAGAACCTGCT
GGGTCTGGTCGGCTGCTGCACGGTGGTGCGAGACCATCTGTATCTCATCA
CGGAGTTCATGCCGTACGGAGACCTGAAGAGCTTCTTAAGGAAATGCCGG
CAGCTGAAAGAGGCCTCTGATGAACCTCGGGACGACATCTACAACTTCGA
GGTGATACAGATGTACCAGGTGGCTCGGCAGATCGCTAGAGGCATGGATC
ACATCTCCCGGTCCCGTTACATCCACGGTGACCTGGCCGCCCGGAACGTG
CTGGTCGGGGAGAGGCTGACGGTGAAGATTTCCGACTTCGGGCTGGCAGA
AGACATTTACAGCCGAGGCTACCGTCGGCAGAACCGGCTACAAATGGTGC
CTTGGAAATGGATGGCGCCTGAGCGGATGCAGGGCGGGCAGGCCTACACC
ACACAGAGCGATGTGTGGTCCTTCGGAATAGTGCTGTACGAGATCAGTTC
GCTAGGGGGCGATCCTTATCCTGACGTGCCGATGGCCCAGCTGAAAGAAC
GCCTGCAGACTGGACTGAGGATGCCCCAACCCGAGGGCTGTTCTGACGGC
ATGTACGACCTGATGCAGCAGTGTTGGCGCTGGCAGCCCATCGAGCGGCC
GTCCTTCCGCACGCTGGAGCTCGACCTGGACAAGCAGCTCGCCTTCTACG
GACCCGAGTACGCCAGAGCTACCCCCTGTACTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96909gene:BL96909Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96909_cuf1transcript:BL96909_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96909_cuf1-E1BL96909_cuf1-E1-1564476830-156367Branchiostoma lanceolatumexon
BL96909_cuf1-E2BL96909_cuf1-E2-1564476830-156369Branchiostoma lanceolatumexon
BL96909_cuf1-E3BL96909_cuf1-E3-1564476830-156371Branchiostoma lanceolatumexon
BL96909_cuf1-E4BL96909_cuf1-E4-1564476830-156373Branchiostoma lanceolatumexon
BL96909_cuf1-E5BL96909_cuf1-E5-1564476830-156376Branchiostoma lanceolatumexon
BL96909_cuf1-E6BL96909_cuf1-E6-1564476830-156378Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000023genomeSc0000023:2397788..2402196 +
Properties
Property NameValue
Transcript idBL96909_cuf1
Biotypeprotein_coding