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transcript:BL96907_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96907_cuf1
Unique Nametranscript:BL96907_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96907_cuf1

>transcript:BL96907_cuf1-protein ID=transcript:BL96907_cuf1-protein|Name=transcript:BL96907_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=100bp
VSNEVCYEGNGMSYRGPVSTTLSGKTCQRWDSRQPHDHDFLPTTYPDSGL
LLNYCRNPGEFGSRPWCLTTDPSELWDYCNVPDCGKNCAEGIGETYRGNV
Run BLAST on NCBI

mRNA from alignment at Sc0000023:667745..669172-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96907_cuf1 ID=transcript:BL96907_cuf1|Name=transcript:BL96907_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=1428bp|location=Sequence derived from alignment at Sc0000023:667745..669172- (Branchiostoma lanceolatum)
GTGAGCAACGGTGGGTTTTCCTTGATTTTTTTATCCTCTTTTCTTTATCA CAGACATTACCATAGCATTACATTTCTGAGCTTTCAATGATATGAGCTAC GATAATATGAGACGCATACCACCAATATACCTATGAGAAGTAAAAAGAAC ATGTTTCAGCCGCAAAGCTCACCAGTGTAAGAAATGTCACCTGATGAAAA TATATCTTGCCATGCAATTTAGGGGAAGGTCTATCATGTGGGGAAAAGAA AAAAAAATTACACATAACGTTCATCCTTGTTCCTTAGAAGATTCTTAATC GTGACGCCACCTACTATCCTAATTGCGTGACACGTGACAGTCCGCATTTA GGCAATCGAATGGTGACGTATATGATAGGTAAATCAAAGAGAATCGACCT ATTCCCCAAGGGTTGCGAGGCACGCCACCATGTACCACCCCTTAATTTGA ACGGGTTATTTGCTCCCAGGGGGACATGTCTATTACCTAATGTCGTGATA TTTTAGACTGGACTCCAGGCTACCTACATGAATATACATCATGTCGTAAG TACAATTTTTCTCTTGTACAGAGGTCTGTTATGAAGGAAACGGGATGTCG TACCGCGGTCCCGTTTCTACAACGCTTTCCGGGAAAACCTGCCAACGCTG GGACAGCCGACAGCCTCACGACCACGACTTTCTCCCGACAACGTACCCGG ATTCCGGTCTCCTTCTCAACTACTGCCGGAACCCGGGGGAGTTCGGTTCC AGACCGTGGTGCCTAACAACGGACCCTAGCGAGCTCTGGGATTACTGCAA CGTTCCGGATTGTGGTCTGATGATTTCGACACAATTATTACTAAATCTTA AGATTATTTTTTCATTTTCAACGAAGCGCGAAGACCCTCGCTGGGGTCAT TATGATCCGTTGGGTAACAGAAATATTTTTCAAAGAAGATTGCGAATGTA CCTTTAAGTTGTTAGAAGCATTAGTCCACAGTGCTCTGCTCGGTCCAATA AGAAAAGTCGCCTATCTGTGTTAGCCTCATTTAGCGAGGGAAAAACCAGT TTATATGTGACAATATGGATGATTTGCAATGTTGTCAATGGTCACCTTGA GGAGTAAACCCCCGAGAGTATAAGCCCTAAAGTGTAAACTCACGATAGAT TGATCTGTGAATCGTTGCTATTTACCATGATTTGAACAAATTTTGCAGGT GAAAATCATGCTGAAGGCATCGGTGGGGAAAAACCTTTATTGATGACAAC ATGGTAGATTTACAATGTTGGCAATGGTTACATCGACAAGTAAAACCCCT GAAAGCTAGCCCTAGATATAAAGTTCAATAGATTGTTCTGTGAATCGCTG CTATTCACCATGATATGAACAACTTTTGCAGGTAAGAACTGTGCTGAAGG CATCGGTGAAACCTACCGCGGGAACGTC

Coding sequence (CDS) from alignment at Sc0000023:667745..669172-

>transcript:BL96907_cuf1 ID=transcript:BL96907_cuf1|Name=transcript:BL96907_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=900bp|location=Sequence derived from alignment at Sc0000023:667745..669172- (Branchiostoma lanceolatum)
GTGAGCAACGAGGTCTGTTATGAAGGAAACGGGATGTCGTACCGCGGTCC
CGTTTCTACAACGCTTTCCGGGAAAACCTGCCAACGCTGGGACAGCCGAC
AGCCTCACGACCACGACTTTCTCCCGACAACGTACCCGGATTCCGGTCTC
CTTCTCAACTACTGCCGGAACCCGGGGGAGTTCGGTTCCAGACCGTGGTG
CCTAACAACGGACCCTAGCGAGCTCTGGGATTACTGCAACGTTCCGGATT
GTGGTAAGAACTGTGCTGAAGGCATCGGTGAAACCTACCGCGGGAACGTC
GTGAGCAACGAGGTCTGTTATGAAGGAAACGGGATGTCGTACCGCGGTCC
CGTTTCTACAACGCTTTCCGGGAAAACCTGCCAACGCTGGGACAGCCGAC
AGCCTCACGACCACGACTTTCTCCCGACAACGTACCCGGATTCCGGTCTC
CTTCTCAACTACTGCCGGAACCCGGGGGAGTTCGGTTCCAGACCGTGGTG
CCTAACAACGGACCCTAGCGAGCTCTGGGATTACTGCAACGTTCCGGATT
GTGGTAAGAACTGTGCTGAAGGCATCGGTGAAACCTACCGCGGGAACGTC
GTGAGCAACGAGGTCTGTTATGAAGGAAACGGGATGTCGTACCGCGGTCC
CGTTTCTACAACGCTTTCCGGGAAAACCTGCCAACGCTGGGACAGCCGAC
AGCCTCACGACCACGACTTTCTCCCGACAACGTACCCGGATTCCGGTCTC
CTTCTCAACTACTGCCGGAACCCGGGGGAGTTCGGTTCCAGACCGTGGTG
CCTAACAACGGACCCTAGCGAGCTCTGGGATTACTGCAACGTTCCGGATT
GTGGTAAGAACTGTGCTGAAGGCATCGGTGAAACCTACCGCGGGAACGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96907gene:BL96907Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96907_cuf1-E1BL96907_cuf1-E1-1564476830-154426Branchiostoma lanceolatumexon
BL96907_cuf1-E2BL96907_cuf1-E2-1564476830-154424Branchiostoma lanceolatumexon
BL96907_cuf1-E3BL96907_cuf1-E3-1564476830-154422Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96907_cuf1transcript:BL96907_cuf1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000023genomeSc0000023:667745..669172 -
Properties
Property NameValue
Transcript idBL96907_cuf1
Biotypeprotein_coding