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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96904_cuf7 >transcript:BL96904_cuf7-protein ID=transcript:BL96904_cuf7-protein|Name=transcript:BL96904_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=333bp
APPPTKLSQKPTCLVPPVTHGSWGATGDMEQTCEPGFTGLDNLGNTCFMN
ATLQALANTRELRDFCQSNKFKDDLNTENVLGSGGKLAIAFACVLRTLWS
GTRTSYAPSRLKSIIATKAHQFTGFAQHDAQEFLAFLLDGLHEDLNRIQD
KPYTSTVESDGRPDWEVADDAWRVYMKRNDSFMVDLFHGQFKSTLVCPAC
SKVSVTFDPFAYLSVPLPKKQRTLSVYFQSRDPANKPVLFSVPLAVDAAV
EDLKLAIGRRTDTKAQNLRVFEVYKSGIHFWYNRGDTLSNVQANDHIMVC
EVLDQQQAGESVYEVAVLQRCLQPLNRSPITHC Run BLAST on NCBI mRNA from alignment at Sc0000023:615809..618780+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96904_cuf7 ID=transcript:BL96904_cuf7|Name=transcript:BL96904_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=2972bp|location=Sequence derived from alignment at Sc0000023:615809..618780+ (Branchiostoma lanceolatum)
CTGCACCTCCGCCTACTAAACTTAGCCAGGTAAGAACCAAGAACCCACCA
CCACCTGCACCTCCGCCTACTAAACTAAGTCAGGTAACATCAGTAATGTT
CAAATAAACTGTCCCAGTGTTAAAGTTGCTGTGAGTCAAGTCTTGTTGAG
AATACACACATACATGTACTACAGACAGAAAAATGTTTGCTGATTTGAGT
ACAAGAGCAGGGCAAATTTCAGACAAGCTGTAAGAGCCGAAACTAAAGTT
CTTGAATCACAACCTAAATAGTATTTACCTGGCTGACATTTAATTTTGAT
TTCTATTCTAATACTCCTTGAAGGAATCTGAAGAGTTACTTAAGTATCTG
CCACTTTGGGTTTAAATCAAGAAACTCAATTTTCTGTGTCTTCCTAACCT
GATGATGCTATCCAGTGTAAGAGAAGTTTTTTCTATTCATTATGATGAGA
CTCCTGGTAACATCAGGTTCACTTCCTGTCCACAGAAGCCGACCTGCCTG
GTTCCCCCTGTGACCCACGGGTCGTGGGGCGCTACAGGAGACATGGAGCA
GACCTGTGAGCCTGGGTTCACTGGGCTGGACAACCTGGGCAATACATGCT
TCATGAACGCAACCTTACAGGCACTGGCCAACACCAGGGAGCTCAGGGAC
TTCTGTCAGAGTAGGTTGCTCATCAGTATCTTCCTCATAACATATCTTAT
TAGTTATAGGAACTCTAAGACTTGGTGCACTGTAGCTGTGAACCTTTGAT
AAGTCATTTACAGGAACTGGTGAACACCAGGGACTTCTGTCAGAGTAGGT
TTAAGACTTGCACCCATCACTCTTGTATGCTGTATACAATGTAATAACAA
TGTACATTAGAATTTGGTGAACTTTGATTGGCCAAGCCACCAGGGCCCTA
TGCTCCTTGGTCTGAAAAAAAAAGAAAAATGCATTGCACTTGTGCTTATT
CACTGAAAAAGCCACACCAGGAAAACATGTTTTAGTGTACTGTGTAGGCT
TGAATAAAGTGTGTCTAACCATGCACCATTTCTAAAGATGTGGCAGAAGT
GTGTAGGGTTGACCTAAGGTTGCTCACTGCAATTGCCATCACCACTACCT
ACTACTTGTTATATACTGAGGATTTCTGTTAGGAATACATGTACTTTTGT
CCTGTATCTTATATCCTCATTTCTGGCTGACAAATATTGATAATTGTAGC
AATTGCAATACACAGTAATACTGTATCATTGTACTGAATAAACAACTGTC
TTTGTCACTTCCTTTCACAGGTAATAAATTCAAGGACGATCTGAACACAG
AAAACGTGCTTGGTTCTGGAGGGAAGCTGGCCATAGCCTTTGCCTGCGTC
CTTCGCACGTTGTGGTCGGGCACGCGGACGTCGTACGCCCCCTCTCGCCT
CAAGAGCATCATCGCGACCAAAGCGCACCAGTTCACAGGTTTCGCCCAGC
ACGATGCCCAGGAGTTTCTCGCGTTTCTGTTAGATGGCCTACACGAGGAC
CTGAACAGGATCCAGGTAAAGGGGAACACCATTTCTCAAAAGTGCAGTTT
TTGCTGAAATACGCACCTTGACAGTCTATCTGGTTAAAGATGTAAAAATT
TGGTAAATTCTTTAATATCAATCCCCCCCCCTCTGTACCCCCTGAAGTTT
GTTCCATGACTATGTATAAAGACACTGTCAGCATACACGACAGTGAATAT
CTGAACCCCAGAGCATTTCTCCACACAAATATAGACTATTCCAAAATGTC
ACCATTGCAAAAATGGACTATTCCCAATCACAACATGTGAAAAGGGGTTA
GTGTCCAATGATTCAATGATTGCCCAAAATTTGTGATTTCTTTGCTTTAA
GAATAAATAAGATAGACCATTTCATATCTTGAAATGTGTATTTTACAAAG
TTGGTATTAATACCCCCCTAATCCAGGACAAGCCGTACACTTCGACCGTG
GAGTCCGACGGGCGGCCGGACTGGGAAGTCGCAGACGACGCGTGGCGCGT
CTACATGAAGAGGAATGACTCCTTTATGGTGGACCTCTTCCACGGACAGT
TCAAGTCCACCCTCGTCTGCCCCGCCTGTTCCAAAGTCTCCGTAACCTTC
GACCCGTTCGCCTACCTCTCCGTCCCCTTGCCTAAAAAACAGAGAACGCT
GTCGGTGTACTTCCAGTCCCGAGACCCGGCCAACAAGCCGGTGCTGTTTT
CGGTGCCGCTGGCGGTAGACGCTGCTGTAGAGGACCTAAAGTTAGCCATA
GGGAGGCGAACGGACACGAAGGCGCAGAACCTGCGGGTGTTCGAGGTGTA
CAAGAGCGGGATCCACTTCTGGTACAACCGGGGCGACACCCTGAGTAACG
TGCAGGCCAACGACCACATCATGGTGTGTGAGGTGCTCGATCAACAGCAG
GTGAGTTTTGGCAGGGTGTAGAGTTTTTTGCTGTTTCAATTTTTTGTCTT
TTTTTTTTTCAAAGTTTCCATCCTTTGAATAGTGAGGAGCTCTCACAACT
ACAGGTCAGTCTGGGAGAAATGTAGGGTTTTATGTGCTGTTGCTTGGAAA
TTATTTTTAGCCTTTTTGTAGTGGAAACTTAAATAATCCAACCTGCCCCA
CTATATGTACATACTCAATGTGTGATGTACATCTAAATTTAATAATTTTT
TGGACACTTCGTAGCACAAGGACCTGGTCATTACATTAACAAAAATTTAA
ACAGTATCTCCAAGTGCCGTAGCCTTCAGCACAATTAACTATAGTATATG
ACGATAATGTTGATTTTTTTAATCTATTACATTTCCTACAGCAGGATACT
AGTATGTTACCCCCTCCTAACACCATACATTATTTTGTATTCCCCCCCCC
CAGGCAGGAGAGTCTGTGTACGAGGTAGCTGTTCTTCAGCGCTGTCTCCA
GCCCCTGAACCGATCCCCCATCACACACTGCTGATCATACATACATATAT
CCCCCCCCCCCAGGCAGGAGAG Coding sequence (CDS) from alignment at Sc0000023:615809..618780+ >transcript:BL96904_cuf7 ID=transcript:BL96904_cuf7|Name=transcript:BL96904_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=5010bp|location=Sequence derived from alignment at Sc0000023:615809..618780+ (Branchiostoma lanceolatum)
GCACCTCCGCCTACTAAACTTAGCCAGAAGCCGACCTGCCTGGTTCCCCC
TGTGACCCACGGGTCGTGGGGCGCTACAGGAGACATGGAGCAGACCTGTG
AGCCTGGGTTCACTGGGCTGGACAACCTGGGCAATACATGCTTCATGAAC
GCAACCTTACAGGCACTGGCCAACACCAGGGAGCTCAGGGACTTCTGTCA
GAGTAATAAATTCAAGGACGATCTGAACACAGAAAACGTGCTTGGTTCTG
GAGGGAAGCTGGCCATAGCCTTTGCCTGCGTCCTTCGCACGTTGTGGTCG
GGCACGCGGACGTCGTACGCCCCCTCTCGCCTCAAGAGCATCATCGCGAC
CAAAGCGCACCAGTTCACAGGTTTCGCCCAGCACGATGCCCAGGAGTTTC
TCGCGTTTCTGTTAGATGGCCTACACGAGGACCTGAACAGGATCCAGGAC
AAGCCGTACACTTCGACCGTGGAGTCCGACGGGCGGCCGGACTGGGAAGT
CGCAGACGACGCGTGGCGCGTCTACATGAAGAGGAATGACTCCTTTATGG
TGGACCTCTTCCACGGACAGTTCAAGTCCACCCTCGTCTGCCCCGCCTGT
TCCAAAGTCTCCGTAACCTTCGACCCGTTCGCCTACCTCTCCGTCCCCTT
GCCTAAAAAACAGAGAACGCTGTCGGTGTACTTCCAGTCCCGAGACCCGG
CCAACAAGCCGGTGCTGTTTTCGGTGCCGCTGGCGGTAGACGCTGCTGTA
GAGGACCTAAAGTTAGCCATAGGGAGGCGAACGGACACGAAGGCGCAGAA
CCTGCGGGTGTTCGAGGTGTACAAGAGCGGGATCCACTTCTGGTACAACC
GGGGCGACACCCTGAGTAACGTGCAGGCCAACGACCACATCATGGTGTGT
GAGGTGCTCGATCAACAGCAGGCAGGAGAGTCTGTGTACGAGGTAGCTGT
TCTTCAGCGCTGTCTCCAGCCCCTGAACCGATCCCCCATCACACACTGCT
GAGCACCTCCGCCTACTAAACTTAGCCAGAAGCCGACCTGCCTGGTTCCC
CCTGTGACCCACGGGTCGTGGGGCGCTACAGGAGACATGGAGCAGACCTG
TGAGCCTGGGTTCACTGGGCTGGACAACCTGGGCAATACATGCTTCATGA
ACGCAACCTTACAGGCACTGGCCAACACCAGGGAGCTCAGGGACTTCTGT
CAGAGTAATAAATTCAAGGACGATCTGAACACAGAAAACGTGCTTGGTTC
TGGAGGGAAGCTGGCCATAGCCTTTGCCTGCGTCCTTCGCACGTTGTGGT
CGGGCACGCGGACGTCGTACGCCCCCTCTCGCCTCAAGAGCATCATCGCG
ACCAAAGCGCACCAGTTCACAGGTTTCGCCCAGCACGATGCCCAGGAGTT
TCTCGCGTTTCTGTTAGATGGCCTACACGAGGACCTGAACAGGATCCAGG
ACAAGCCGTACACTTCGACCGTGGAGTCCGACGGGCGGCCGGACTGGGAA
GTCGCAGACGACGCGTGGCGCGTCTACATGAAGAGGAATGACTCCTTTAT
GGTGGACCTCTTCCACGGACAGTTCAAGTCCACCCTCGTCTGCCCCGCCT
GTTCCAAAGTCTCCGTAACCTTCGACCCGTTCGCCTACCTCTCCGTCCCC
TTGCCTAAAAAACAGAGAACGCTGTCGGTGTACTTCCAGTCCCGAGACCC
GGCCAACAAGCCGGTGCTGTTTTCGGTGCCGCTGGCGGTAGACGCTGCTG
TAGAGGACCTAAAGTTAGCCATAGGGAGGCGAACGGACACGAAGGCGCAG
AACCTGCGGGTGTTCGAGGTGTACAAGAGCGGGATCCACTTCTGGTACAA
CCGGGGCGACACCCTGAGTAACGTGCAGGCCAACGACCACATCATGGTGT
GTGAGGTGCTCGATCAACAGCAGGCAGGAGAGTCTGTGTACGAGGTAGCT
GTTCTTCAGCGCTGTCTCCAGCCCCTGAACCGATCCCCCATCACACACTG
CTGAGCACCTCCGCCTACTAAACTTAGCCAGAAGCCGACCTGCCTGGTTC
CCCCTGTGACCCACGGGTCGTGGGGCGCTACAGGAGACATGGAGCAGACC
TGTGAGCCTGGGTTCACTGGGCTGGACAACCTGGGCAATACATGCTTCAT
GAACGCAACCTTACAGGCACTGGCCAACACCAGGGAGCTCAGGGACTTCT
GTCAGAGTAATAAATTCAAGGACGATCTGAACACAGAAAACGTGCTTGGT
TCTGGAGGGAAGCTGGCCATAGCCTTTGCCTGCGTCCTTCGCACGTTGTG
GTCGGGCACGCGGACGTCGTACGCCCCCTCTCGCCTCAAGAGCATCATCG
CGACCAAAGCGCACCAGTTCACAGGTTTCGCCCAGCACGATGCCCAGGAG
TTTCTCGCGTTTCTGTTAGATGGCCTACACGAGGACCTGAACAGGATCCA
GGACAAGCCGTACACTTCGACCGTGGAGTCCGACGGGCGGCCGGACTGGG
AAGTCGCAGACGACGCGTGGCGCGTCTACATGAAGAGGAATGACTCCTTT
ATGGTGGACCTCTTCCACGGACAGTTCAAGTCCACCCTCGTCTGCCCCGC
CTGTTCCAAAGTCTCCGTAACCTTCGACCCGTTCGCCTACCTCTCCGTCC
CCTTGCCTAAAAAACAGAGAACGCTGTCGGTGTACTTCCAGTCCCGAGAC
CCGGCCAACAAGCCGGTGCTGTTTTCGGTGCCGCTGGCGGTAGACGCTGC
TGTAGAGGACCTAAAGTTAGCCATAGGGAGGCGAACGGACACGAAGGCGC
AGAACCTGCGGGTGTTCGAGGTGTACAAGAGCGGGATCCACTTCTGGTAC
AACCGGGGCGACACCCTGAGTAACGTGCAGGCCAACGACCACATCATGGT
GTGTGAGGTGCTCGATCAACAGCAGGCAGGAGAGTCTGTGTACGAGGTAG
CTGTTCTTCAGCGCTGTCTCCAGCCCCTGAACCGATCCCCCATCACACAC
TGCTGAGCACCTCCGCCTACTAAACTTAGCCAGAAGCCGACCTGCCTGGT
TCCCCCTGTGACCCACGGGTCGTGGGGCGCTACAGGAGACATGGAGCAGA
CCTGTGAGCCTGGGTTCACTGGGCTGGACAACCTGGGCAATACATGCTTC
ATGAACGCAACCTTACAGGCACTGGCCAACACCAGGGAGCTCAGGGACTT
CTGTCAGAGTAATAAATTCAAGGACGATCTGAACACAGAAAACGTGCTTG
GTTCTGGAGGGAAGCTGGCCATAGCCTTTGCCTGCGTCCTTCGCACGTTG
TGGTCGGGCACGCGGACGTCGTACGCCCCCTCTCGCCTCAAGAGCATCAT
CGCGACCAAAGCGCACCAGTTCACAGGTTTCGCCCAGCACGATGCCCAGG
AGTTTCTCGCGTTTCTGTTAGATGGCCTACACGAGGACCTGAACAGGATC
CAGGACAAGCCGTACACTTCGACCGTGGAGTCCGACGGGCGGCCGGACTG
GGAAGTCGCAGACGACGCGTGGCGCGTCTACATGAAGAGGAATGACTCCT
TTATGGTGGACCTCTTCCACGGACAGTTCAAGTCCACCCTCGTCTGCCCC
GCCTGTTCCAAAGTCTCCGTAACCTTCGACCCGTTCGCCTACCTCTCCGT
CCCCTTGCCTAAAAAACAGAGAACGCTGTCGGTGTACTTCCAGTCCCGAG
ACCCGGCCAACAAGCCGGTGCTGTTTTCGGTGCCGCTGGCGGTAGACGCT
GCTGTAGAGGACCTAAAGTTAGCCATAGGGAGGCGAACGGACACGAAGGC
GCAGAACCTGCGGGTGTTCGAGGTGTACAAGAGCGGGATCCACTTCTGGT
ACAACCGGGGCGACACCCTGAGTAACGTGCAGGCCAACGACCACATCATG
GTGTGTGAGGTGCTCGATCAACAGCAGGCAGGAGAGTCTGTGTACGAGGT
AGCTGTTCTTCAGCGCTGTCTCCAGCCCCTGAACCGATCCCCCATCACAC
ACTGCTGAGCACCTCCGCCTACTAAACTTAGCCAGAAGCCGACCTGCCTG
GTTCCCCCTGTGACCCACGGGTCGTGGGGCGCTACAGGAGACATGGAGCA
GACCTGTGAGCCTGGGTTCACTGGGCTGGACAACCTGGGCAATACATGCT
TCATGAACGCAACCTTACAGGCACTGGCCAACACCAGGGAGCTCAGGGAC
TTCTGTCAGAGTAATAAATTCAAGGACGATCTGAACACAGAAAACGTGCT
TGGTTCTGGAGGGAAGCTGGCCATAGCCTTTGCCTGCGTCCTTCGCACGT
TGTGGTCGGGCACGCGGACGTCGTACGCCCCCTCTCGCCTCAAGAGCATC
ATCGCGACCAAAGCGCACCAGTTCACAGGTTTCGCCCAGCACGATGCCCA
GGAGTTTCTCGCGTTTCTGTTAGATGGCCTACACGAGGACCTGAACAGGA
TCCAGGACAAGCCGTACACTTCGACCGTGGAGTCCGACGGGCGGCCGGAC
TGGGAAGTCGCAGACGACGCGTGGCGCGTCTACATGAAGAGGAATGACTC
CTTTATGGTGGACCTCTTCCACGGACAGTTCAAGTCCACCCTCGTCTGCC
CCGCCTGTTCCAAAGTCTCCGTAACCTTCGACCCGTTCGCCTACCTCTCC
GTCCCCTTGCCTAAAAAACAGAGAACGCTGTCGGTGTACTTCCAGTCCCG
AGACCCGGCCAACAAGCCGGTGCTGTTTTCGGTGCCGCTGGCGGTAGACG
CTGCTGTAGAGGACCTAAAGTTAGCCATAGGGAGGCGAACGGACACGAAG
GCGCAGAACCTGCGGGTGTTCGAGGTGTACAAGAGCGGGATCCACTTCTG
GTACAACCGGGGCGACACCCTGAGTAACGTGCAGGCCAACGACCACATCA
TGGTGTGTGAGGTGCTCGATCAACAGCAGGCAGGAGAGTCTGTGTACGAG
GTAGCTGTTCTTCAGCGCTGTCTCCAGCCCCTGAACCGATCCCCCATCAC
ACACTGCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000023 | genome | Sc0000023:615809..618780 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96904_cuf7 |
| Biotype | protein_coding |
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