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transcript:BL96891_cuf13 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96891_cuf13
Unique Nametranscript:BL96891_cuf13
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96891_cuf13

>transcript:BL96891_cuf13-protein ID=transcript:BL96891_cuf13-protein|Name=transcript:BL96891_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=276bp
EVENLSSVKQQRKKRQYQHVYVGLDNGTVRLYRRAIPDNVDQGDDTISRT
ESMVITQEESEWEEVKEIVLGDNPEERVTCMALVNNDKELWVGCGGTIVI
IGTTTKLKEHRVELFHDSVIQIRCHENRVWCFERGSAKVLELDPSSHQQV
RELSCEGDQVTVGSILVVKDTLWVGTSSGDVQVFNINPDSPHYDIGLLLT
TLKTEPPEQGCDFGSIRHMTAVGGNKVVYARDQIRNADGRMWYQMVTWGA
MGTDDIHRVQSFWNELRQVERDKLKE
Run BLAST on NCBI

mRNA from alignment at Sc0000048:1655141..1658164+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96891_cuf13 ID=transcript:BL96891_cuf13|Name=transcript:BL96891_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=3024bp|location=Sequence derived from alignment at Sc0000048:1655141..1658164+ (Branchiostoma lanceolatum)
GAAGTGGAGAACCTGTCATCAGTCAAACAGGTGTGTTTCCTGTGGAGTGT ATAAGGCCACACCAAGTTATTATTCTTGGTTCTCTAAGTTTCACATGAAT AGAATGGAACGGGAAGGCGAAATAGGAATAAGACCAAAAAAACCCATTCA TTTGTATCAATGAAGCCAGCAATGTCAACATACCAGGCTGTTCAACATTT CAAACAATGAATTTTTGACTTATTGTGAATTTGGTAATGAAACAACAGGA AGACTATAACTTTTTTCAAATGCTGTTGCATTTGGACTGTAACTGCCATG GCCAGCAATAGCTAGCATATTGGGGTTCAGAACTCCAAGTTCCAAGTCAT CCTTTTCTAAAAGTCAAATCTGCAAACCTTTATTAAAAGGTGATTTGATC ATAGTTTCTATTCTGTTGACAGAGAAAGAAGAGGCAGTACCAGCACGTGT ATGTTGGTCTGGATAACGGTACCGTGAGGCTGTACAGGAGAGCCATCCCT GACAATGTGGACCAAGGTGATGACACCATCAGCAGAACAGAGTCAATGGT CATTACTCAGGTGATGTTACTTTCTACTCAGTTTCCTAATTGAAAAGTAG CTGTTTAATGTTAGACAACTGTTGAAAATATTTCATATGGAGATTCAGAC ATTTTTTTATCAGTTGTTAAATAGTCAACTGAAGGTAGGCTATAATGCAA ATTTTTAGAATTTTTTTTACTACTAGTAGTAAGAAAATGTCTTACCGTAT TAAGAAGACACAATTAGTAAATGGTATTCTAGGTATAAGACAGCACAAGA CATGATGAATAGGCTAAGGTACTATGCCCAAGATTAAAGTGGGAAGAACT TGTGTCTTACTGCTTCATTTGAATTGAAGACTCAAAATAAATGTACCGTA TTTACATTTTGATATACAAGATTGTTTACATTGAACTTGATAGAATATGA CACTCATGAGTGGAATGCAAAGCCACGTTTTAGCCACATCATAGTTATAA GCTCGGTATTTCTATATAAACTCTGGTTTTCCCCATTCAGGAGGAATCAG AATGGGAAGAAGTCAAGGAAATTGTTCTTGGTGACAACCCAGAGGAGAGA GTGACATGCATGGCACTGGTCAACAATGATAAGGAGTTGTGGGTGGGATG TGGTGGAACTATTGTCATCATTGGCACAACAACCAAACTCAAGGAACACC GGTAAGTCTGGCTTGTCACCTTCTCATTTTTCGAGCTTTCCTGAGCACTT TCTAGTGGTTGAGTTACTGTATTAGAAATAAATTTCAGTAACCACTGGGT TATTTTCTTTCAGTGTTGAGTTGTTCCATGATTCCGTGATCCAGATAAGG TGTCATGAGAACAGGGTTTGGTGCTTTGAACGTGGATCTGCCAAAGTCCT TGAGCTGGACCCCAGCAGTCACCAACAAGTCAGGGAGCTCTCGTGTGAAG GAGATCAAGTCACAGTCGGGTCCATACTCGTGGTGAAGGACACGCTATGG GTAGGAACAAGCTCTGGTGACGTCCAGGTTTTCAACATCAACCCTGATTC CCCCCACTATGACATTGGACTACTCCTGACAACTTTAAAGACCGAGCCAC CAGAGCAGGGATGTGACTTCGGAAGTATCCGGCACATGACAGCTGTGGGA GGGAACAAGGTGGTTTATGCAAGGGACCAGATACGAAATGCTGACGGCCG TATGTGGTATCAAATGGTAACATGGGGAGCTATGGGTACAGACGACATAC ACAGAGTACAAAGCTTCTGGAACGAGCTTAGGCAGGTAGAGAGAGACAAA TTAAAGGAGTGATAACATGGAAGTGCTTCAGCATAATCTAAGGGTTCAAT TTTAACAATACATGGTAACCAGGGCACAATTTGTACAAAGGAAATATACA TGTACCCGAGTCATTGTACAGATCAACAGTAATACATGTTGTGAATCTGA CCAATAAATATGTAGTGCATTTTGTGTGCAATGTGTAAGTGAAACTTTTT CTGACCCATGCACTGCAAGCTTGAGGTTGTACTGTGGTTTTCACCATTAA CCGGTATTTATCTTCAGTCTATAAATCAATCAAGCAATCAAGCATTCCAT TACCTTAGCATCAGAAGCCAGAACAAGTTGCAAGAGAATCCATTTACATG TACCAGTAAGTGTCACATGAACTATGGACAGCTATCTAACAGCTTTACTT AAGTGCTGTCATGCTATTTATATGCTAAGATTACCATGTCTTTGAGAAGA CATACGCATTTGATAGCTAGATACACAATGTACACATTTTACATGTACGT GCACATGGAAAATACACAGTGCTGGTCTGGAAACTCAGTAGATTAGTGAA ATGTGCGATATTTGAAGAGTATACATTTACATCCTGTGAAAGTTTAGGAC TTGTCATTCAGTTGTCTTATTTTTTTGTGAATCTTAAAAATACTGTGGTA AGTTGAGCAAAAGTAAGATCTATTAATTTGCAGGTGTTTATAATCTTCTG AAAAAACAACAAGACAACATGTTCTAGACAGGGACATTTGAGTTTGCATC ACAGTACTGATGACGGTGTTATGTACAAACTTCTGTGACTGTCGCAATTG TTTCAAGTTACTTGTTGTAACTGTATTACCTTTACAATATGTACATGTAC ATGTGACAAATGGCATTTGTAAATTCACATGTAAATTCAATAAAGTTAAC ATAAAAAACAAAAGTGTCACATGAAAAAGATTCTCTCACTGTAACATTAC AGAATTCAGTAACAGTTATACATCCTTTGAGTCACGGTCAGAATTCTAGA CCTCTCGGTGCAGTGTCCAGAACAGAACTGCAGTGCTTCTAGGCACCACT TATCAAATATTTGGTCTCTGTCAAAAATATGTCCTATAGGTTACTTACAG TGTATATAGCCACTACCTTTAGCAAATTTGACATCATGGGTCACATCATT TAGTGAATACAACTGATGAAAAATGGTGTAAACCAAATGATGATGTCTCT CAGATTTACATCTTTTGAGCCATG

Coding sequence (CDS) from alignment at Sc0000048:1655141..1658164+

>transcript:BL96891_cuf13 ID=transcript:BL96891_cuf13|Name=transcript:BL96891_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=3324bp|location=Sequence derived from alignment at Sc0000048:1655141..1658164+ (Branchiostoma lanceolatum)
GAAGTGGAGAACCTGTCATCAGTCAAACAGCAGAGAAAGAAGAGGCAGTA
CCAGCACGTGTATGTTGGTCTGGATAACGGTACCGTGAGGCTGTACAGGA
GAGCCATCCCTGACAATGTGGACCAAGGTGATGACACCATCAGCAGAACA
GAGTCAATGGTCATTACTCAGGAGGAATCAGAATGGGAAGAAGTCAAGGA
AATTGTTCTTGGTGACAACCCAGAGGAGAGAGTGACATGCATGGCACTGG
TCAACAATGATAAGGAGTTGTGGGTGGGATGTGGTGGAACTATTGTCATC
ATTGGCACAACAACCAAACTCAAGGAACACCGTGTTGAGTTGTTCCATGA
TTCCGTGATCCAGATAAGGTGTCATGAGAACAGGGTTTGGTGCTTTGAAC
GTGGATCTGCCAAAGTCCTTGAGCTGGACCCCAGCAGTCACCAACAAGTC
AGGGAGCTCTCGTGTGAAGGAGATCAAGTCACAGTCGGGTCCATACTCGT
GGTGAAGGACACGCTATGGGTAGGAACAAGCTCTGGTGACGTCCAGGTTT
TCAACATCAACCCTGATTCCCCCCACTATGACATTGGACTACTCCTGACA
ACTTTAAAGACCGAGCCACCAGAGCAGGGATGTGACTTCGGAAGTATCCG
GCACATGACAGCTGTGGGAGGGAACAAGGTGGTTTATGCAAGGGACCAGA
TACGAAATGCTGACGGCCGTATGTGGTATCAAATGGTAACATGGGGAGCT
ATGGGTACAGACGACATACACAGAGTACAAAGCTTCTGGAACGAGCTTAG
GCAGGTAGAGAGAGACAAATTAAAGGAGTGAGAAGTGGAGAACCTGTCAT
CAGTCAAACAGCAGAGAAAGAAGAGGCAGTACCAGCACGTGTATGTTGGT
CTGGATAACGGTACCGTGAGGCTGTACAGGAGAGCCATCCCTGACAATGT
GGACCAAGGTGATGACACCATCAGCAGAACAGAGTCAATGGTCATTACTC
AGGAGGAATCAGAATGGGAAGAAGTCAAGGAAATTGTTCTTGGTGACAAC
CCAGAGGAGAGAGTGACATGCATGGCACTGGTCAACAATGATAAGGAGTT
GTGGGTGGGATGTGGTGGAACTATTGTCATCATTGGCACAACAACCAAAC
TCAAGGAACACCGTGTTGAGTTGTTCCATGATTCCGTGATCCAGATAAGG
TGTCATGAGAACAGGGTTTGGTGCTTTGAACGTGGATCTGCCAAAGTCCT
TGAGCTGGACCCCAGCAGTCACCAACAAGTCAGGGAGCTCTCGTGTGAAG
GAGATCAAGTCACAGTCGGGTCCATACTCGTGGTGAAGGACACGCTATGG
GTAGGAACAAGCTCTGGTGACGTCCAGGTTTTCAACATCAACCCTGATTC
CCCCCACTATGACATTGGACTACTCCTGACAACTTTAAAGACCGAGCCAC
CAGAGCAGGGATGTGACTTCGGAAGTATCCGGCACATGACAGCTGTGGGA
GGGAACAAGGTGGTTTATGCAAGGGACCAGATACGAAATGCTGACGGCCG
TATGTGGTATCAAATGGTAACATGGGGAGCTATGGGTACAGACGACATAC
ACAGAGTACAAAGCTTCTGGAACGAGCTTAGGCAGGTAGAGAGAGACAAA
TTAAAGGAGTGAGAAGTGGAGAACCTGTCATCAGTCAAACAGCAGAGAAA
GAAGAGGCAGTACCAGCACGTGTATGTTGGTCTGGATAACGGTACCGTGA
GGCTGTACAGGAGAGCCATCCCTGACAATGTGGACCAAGGTGATGACACC
ATCAGCAGAACAGAGTCAATGGTCATTACTCAGGAGGAATCAGAATGGGA
AGAAGTCAAGGAAATTGTTCTTGGTGACAACCCAGAGGAGAGAGTGACAT
GCATGGCACTGGTCAACAATGATAAGGAGTTGTGGGTGGGATGTGGTGGA
ACTATTGTCATCATTGGCACAACAACCAAACTCAAGGAACACCGTGTTGA
GTTGTTCCATGATTCCGTGATCCAGATAAGGTGTCATGAGAACAGGGTTT
GGTGCTTTGAACGTGGATCTGCCAAAGTCCTTGAGCTGGACCCCAGCAGT
CACCAACAAGTCAGGGAGCTCTCGTGTGAAGGAGATCAAGTCACAGTCGG
GTCCATACTCGTGGTGAAGGACACGCTATGGGTAGGAACAAGCTCTGGTG
ACGTCCAGGTTTTCAACATCAACCCTGATTCCCCCCACTATGACATTGGA
CTACTCCTGACAACTTTAAAGACCGAGCCACCAGAGCAGGGATGTGACTT
CGGAAGTATCCGGCACATGACAGCTGTGGGAGGGAACAAGGTGGTTTATG
CAAGGGACCAGATACGAAATGCTGACGGCCGTATGTGGTATCAAATGGTA
ACATGGGGAGCTATGGGTACAGACGACATACACAGAGTACAAAGCTTCTG
GAACGAGCTTAGGCAGGTAGAGAGAGACAAATTAAAGGAGTGAGAAGTGG
AGAACCTGTCATCAGTCAAACAGCAGAGAAAGAAGAGGCAGTACCAGCAC
GTGTATGTTGGTCTGGATAACGGTACCGTGAGGCTGTACAGGAGAGCCAT
CCCTGACAATGTGGACCAAGGTGATGACACCATCAGCAGAACAGAGTCAA
TGGTCATTACTCAGGAGGAATCAGAATGGGAAGAAGTCAAGGAAATTGTT
CTTGGTGACAACCCAGAGGAGAGAGTGACATGCATGGCACTGGTCAACAA
TGATAAGGAGTTGTGGGTGGGATGTGGTGGAACTATTGTCATCATTGGCA
CAACAACCAAACTCAAGGAACACCGTGTTGAGTTGTTCCATGATTCCGTG
ATCCAGATAAGGTGTCATGAGAACAGGGTTTGGTGCTTTGAACGTGGATC
TGCCAAAGTCCTTGAGCTGGACCCCAGCAGTCACCAACAAGTCAGGGAGC
TCTCGTGTGAAGGAGATCAAGTCACAGTCGGGTCCATACTCGTGGTGAAG
GACACGCTATGGGTAGGAACAAGCTCTGGTGACGTCCAGGTTTTCAACAT
CAACCCTGATTCCCCCCACTATGACATTGGACTACTCCTGACAACTTTAA
AGACCGAGCCACCAGAGCAGGGATGTGACTTCGGAAGTATCCGGCACATG
ACAGCTGTGGGAGGGAACAAGGTGGTTTATGCAAGGGACCAGATACGAAA
TGCTGACGGCCGTATGTGGTATCAAATGGTAACATGGGGAGCTATGGGTA
CAGACGACATACACAGAGTACAAAGCTTCTGGAACGAGCTTAGGCAGGTA
GAGAGAGACAAATTAAAGGAGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96891gene:BL96891Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96891_cuf13transcript:BL96891_cuf13-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96891_cuf13-E1BL96891_cuf13-E1-1564476830-222170Branchiostoma lanceolatumexon
BL96891_cuf13-E2BL96891_cuf13-E2-1564476830-222172Branchiostoma lanceolatumexon
BL96891_cuf13-E3BL96891_cuf13-E3-1564476830-222174Branchiostoma lanceolatumexon
BL96891_cuf13-E4BL96891_cuf13-E4-1564476830-222177Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000048genomeSc0000048:1655141..1658164 +
Properties
Property NameValue
Transcript idBL96891_cuf13
Biotypeprotein_coding