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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96887_cuf5 >transcript:BL96887_cuf5-protein ID=transcript:BL96887_cuf5-protein|Name=transcript:BL96887_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
MASDMTLYWGSGSAPSWRAMICLEEKGLSGYTSKLLSFGNKEHKSDEVLK
LNPRGQVPTFKHGDVVVNESLAISLYLENTFKNQGTKLLPDDPAQLALVL
WRTMEVDNIRDKAIGGIFIYTIRTKPEDRDEAVLKEKKKAVAEELKMWEG
YLAQHDGPYIAGKDFTLADASLFPMIAFVVRNQLPLKERFPRLASYYERL
KERPSVKTSWPPHWLTTPDPDLMKDV Run BLAST on NCBI mRNA from alignment at Sc0000123:67491..70549+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96887_cuf5 ID=transcript:BL96887_cuf5|Name=transcript:BL96887_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3059bp|location=Sequence derived from alignment at Sc0000123:67491..70549+ (Branchiostoma lanceolatum)
CAACGACAGATCAACTACATTATGTTCTTCAGTATGGCGGTGGAGGGAAT
CAAAGCTACATTTCAACTTTCTTAAACTTATTCACCGGTGGGACCCCAAA
GTGCACACCCATGGTGGTCAAAAAGGCCTTGTTTTCCTTATTTGAAATGT
ATGCATGCTGACGAGGAGTAGATGTCAATCACTCCTTTCACTACTGGCAA
CAGTGGCTGATTGGTTCACGCCGTTGCAGGCGGGAACTAGATTTGTTGTG
ACCCATTTGTTGTGACCCCGGTGTCACCGGATTTTGTCTACTCACTGTGG
CATCACGATCCCTTCACGACACACACGGAACCATGGCGTCTGATATGACC
CTGTACTGGGGCTCTGGCAGTGCCCCCTCCTGGCGGGCTATGATCTGCCT
GGAGGAAAAGGGGCTGTCAGGATACACCAGCAAGCTTCTTTCCTTTGGGA
ACAAAGAACACAAGTCGGACGAAGTGTTGAAACTCAACCCCCGTGGTCAG
GTAGGCTTGGAGTTTAGTAGACTTTATAACATAAGGATGTGGTATTATCT
AGTCTGAAAGTTTCTAACTATATGTTTAAAACTCGAGTACCAAAAACGTA
GATGCTGAGGAAGCTAGATTGGAAAAAAATATCGAAACAGGGAGTATACG
TAAAGGAATATAACGTTACGTTCAGTCCTTAACCGTGCAAAGCAACGCCG
ATTTGCTGAGTCATCCTAACGTAATTGAAACTTAGTCCTTTCCTCATTGG
CGTATCAAATGTAAATACGTGACAAACTAAGGCCAAGCGACGCGTGAAGA
TATCAAAACTCTCGCAGGTCAGTTTTGATCAAACAGGAATATGGTAATAC
ACAACTTTCCACCTGAGGCAGGTCTTTGTGAATCCTCCTGGTATGAAGTG
GGCGGGGCGTATTTACCTAGTAAACCGCTGCATATTTGTCCATCAGTGAT
TGATTACTGTAGCTTTGCCTTAGTTCTTTCAGACTGAAATGTGTCTGCCC
GATAAACTGTTGGTCATTCAATGGCGATCACGACTGGAACGGGATTCAGG
TGCTCGTGTATCGTTTCGTAACTCAGTAATTACGGACATTGACACACAAA
AAATTAATTCGAAGACACAGATGGTATAAGATGTTGTGTAAATATTCCTA
GCATTAGGCACCTATTAGACTATTTCAGTGTCTTCTATTACCTAAAGAAA
GAGATAGGGATTTTCCAAAGTGCTACTTGGACGGTGTGTTAGAATTCCTA
AGGTGATGCTTTTCATATTCTCCTGTATGTAGGTACCCACCTTCAAGCAT
GGAGATGTCGTCGTGAACGAGTCACTGGCGATCTCTCTGTACCTTGAGGT
AAGTAAAGACGCCATTCGTGTGAAGTTATCATGTAACATTATAACGGCCT
ATTCAGAAAGGATGGTATCCCCACAGGCTCAGTTCTATCTATTCATGTAG
CTGAAACCACACATTTATCTAAGTAATAAAGATGATATGACTTACAGGCA
AAAATGATGAAGTGTGTCCGACCTTCACGGTGTGTTTGTCTGATCCTAAA
CAAGTTATTTTCGAGGATGGTTCGTTTTAATTTGCATAGTTTAGATATTC
CAAGGAAACTCAACAAACGCAAACCACTGAAACCAAGGAGGTTAAAAATA
AGATCTTATTTTAACCTCCTTGCTGAAACACAAAACAACTTTGAACAGCT
CTACCTTCACATACACTCTATTGGCAGAACACCTTCAAAAACCAGGGGAC
CAAACTTCTCCCGGACGACCCTGCCCAGCTGGCGCTGGTACTGTGGAGAA
CGATGGAGGTGGACAACATCAGAGATAAAGCCATCGGTGGCATCTTCATC
TATACTATCCGAACAAAACCCGAGGATAGAGATGAGGCAAGATTTAAGAA
TACTTTCTTCTTGTAACGTTGGTTTTGTGATGACCTTGCCATGTCTGAGT
TGATTGTGACGAGAATAGTTGTAATCTAAACTACACAAGTTCTGATACAT
TTGTTGTAATGCTGTTTTCATCTATATATTTACGTAGTCCAGTCAATAAC
GCGAATGCAAGAGTTGGTTAGCATCGATACTAGCAACAGGTGGGAAAAGC
TGTTACGTTTTCACGCATATTTGACTATATAACATAAACGTCTTACAATG
TCACCAACAGGCTGTACTCAAGGAGAAAAAGAAGGCCGTAGCCGAGGAGC
TAAAAATGTGGGAAGGGTATCTTGCACAGGTACGGTATAACGTATTATTA
TGTGTAACAGTTTTGATAAACAGACATCAAAGATTAGAAAACACAGTCAT
CGGCCAACATTGCGATATGGTTACAAATAATGAACGGATGTGATCATAGC
GCTACACTCAACAATACGCTACTTGTAACGTTAACCTTAATGGTAGAATG
TTCACAATGAGATACTGTTCTACAGGAAAACGAATCTCCCATCACAAACA
ACTCTAAACCAAATCCGTAGCACCATCGTTGTGGAAATAGCATTATGAAA
TCGTACAAAAATATTTCTCGTGTACCTGCAGCACGACGGCCCCTACATAG
CCGGGAAAGACTTCACCCTGGCCGATGCCTCATTGTTCCCGATGATTGCA
TTCGTCGTGCGCAATCAGCTGCCTCTGAAGGAACGCTTTCCTCGTCTGGC
CAGCTACTATGAACGGGTAGGACTACGTTCATTTTACAACATACGCTGTA
ACTAACATGGTGGTACCGATTTTCAGTCATGATGCGAAATCAGATGTAGC
ATAACTTTTGAAAAGAATTCCCTATAATAGACCTTTTACCCTACGATTTC
TTTATGGCTCCGATGATGCAAAGGCTATTGTTTGTTGAGACCTGATTATT
GTCTTTGACCTTGACACTAGCTGAAGGAACGTCCCTCCGTGAAGACGTCC
TGGCCGCCTCACTGGCTGACCACACCCGACCCGGACCTGATGAAGGATGT
GTGATGAGTTAGTCTCACTACCAGACCGTGCCAGACTGTGCTATTGTCAC
GGCACTTGGCACGAGTCATCGAAATCACAAAGATAAAAATAAAAGGATAT
GAACTTTAC Coding sequence (CDS) from alignment at Sc0000123:67491..70549+ >transcript:BL96887_cuf5 ID=transcript:BL96887_cuf5|Name=transcript:BL96887_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=4086bp|location=Sequence derived from alignment at Sc0000123:67491..70549+ (Branchiostoma lanceolatum)
ATGGCGTCTGATATGACCCTGTACTGGGGCTCTGGCAGTGCCCCCTCCTG
GCGGGCTATGATCTGCCTGGAGGAAAAGGGGCTGTCAGGATACACCAGCA
AGCTTCTTTCCTTTGGGAACAAAGAACACAAGTCGGACGAAGTGTTGAAA
CTCAACCCCCGTGGTCAGGTACCCACCTTCAAGCATGGAGATGTCGTCGT
GAACGAGTCACTGGCGATCTCTCTGTACCTTGAGAACACCTTCAAAAACC
AGGGGACCAAACTTCTCCCGGACGACCCTGCCCAGCTGGCGCTGGTACTG
TGGAGAACGATGGAGGTGGACAACATCAGAGATAAAGCCATCGGTGGCAT
CTTCATCTATACTATCCGAACAAAACCCGAGGATAGAGATGAGGCTGTAC
TCAAGGAGAAAAAGAAGGCCGTAGCCGAGGAGCTAAAAATGTGGGAAGGG
TATCTTGCACAGCACGACGGCCCCTACATAGCCGGGAAAGACTTCACCCT
GGCCGATGCCTCATTGTTCCCGATGATTGCATTCGTCGTGCGCAATCAGC
TGCCTCTGAAGGAACGCTTTCCTCGTCTGGCCAGCTACTATGAACGGCTG
AAGGAACGTCCCTCCGTGAAGACGTCCTGGCCGCCTCACTGGCTGACCAC
ACCCGACCCGGACCTGATGAAGGATGTGTGAATGGCGTCTGATATGACCC
TGTACTGGGGCTCTGGCAGTGCCCCCTCCTGGCGGGCTATGATCTGCCTG
GAGGAAAAGGGGCTGTCAGGATACACCAGCAAGCTTCTTTCCTTTGGGAA
CAAAGAACACAAGTCGGACGAAGTGTTGAAACTCAACCCCCGTGGTCAGG
TACCCACCTTCAAGCATGGAGATGTCGTCGTGAACGAGTCACTGGCGATC
TCTCTGTACCTTGAGAACACCTTCAAAAACCAGGGGACCAAACTTCTCCC
GGACGACCCTGCCCAGCTGGCGCTGGTACTGTGGAGAACGATGGAGGTGG
ACAACATCAGAGATAAAGCCATCGGTGGCATCTTCATCTATACTATCCGA
ACAAAACCCGAGGATAGAGATGAGGCTGTACTCAAGGAGAAAAAGAAGGC
CGTAGCCGAGGAGCTAAAAATGTGGGAAGGGTATCTTGCACAGCACGACG
GCCCCTACATAGCCGGGAAAGACTTCACCCTGGCCGATGCCTCATTGTTC
CCGATGATTGCATTCGTCGTGCGCAATCAGCTGCCTCTGAAGGAACGCTT
TCCTCGTCTGGCCAGCTACTATGAACGGCTGAAGGAACGTCCCTCCGTGA
AGACGTCCTGGCCGCCTCACTGGCTGACCACACCCGACCCGGACCTGATG
AAGGATGTGTGAATGGCGTCTGATATGACCCTGTACTGGGGCTCTGGCAG
TGCCCCCTCCTGGCGGGCTATGATCTGCCTGGAGGAAAAGGGGCTGTCAG
GATACACCAGCAAGCTTCTTTCCTTTGGGAACAAAGAACACAAGTCGGAC
GAAGTGTTGAAACTCAACCCCCGTGGTCAGGTACCCACCTTCAAGCATGG
AGATGTCGTCGTGAACGAGTCACTGGCGATCTCTCTGTACCTTGAGAACA
CCTTCAAAAACCAGGGGACCAAACTTCTCCCGGACGACCCTGCCCAGCTG
GCGCTGGTACTGTGGAGAACGATGGAGGTGGACAACATCAGAGATAAAGC
CATCGGTGGCATCTTCATCTATACTATCCGAACAAAACCCGAGGATAGAG
ATGAGGCTGTACTCAAGGAGAAAAAGAAGGCCGTAGCCGAGGAGCTAAAA
ATGTGGGAAGGGTATCTTGCACAGCACGACGGCCCCTACATAGCCGGGAA
AGACTTCACCCTGGCCGATGCCTCATTGTTCCCGATGATTGCATTCGTCG
TGCGCAATCAGCTGCCTCTGAAGGAACGCTTTCCTCGTCTGGCCAGCTAC
TATGAACGGCTGAAGGAACGTCCCTCCGTGAAGACGTCCTGGCCGCCTCA
CTGGCTGACCACACCCGACCCGGACCTGATGAAGGATGTGTGAATGGCGT
CTGATATGACCCTGTACTGGGGCTCTGGCAGTGCCCCCTCCTGGCGGGCT
ATGATCTGCCTGGAGGAAAAGGGGCTGTCAGGATACACCAGCAAGCTTCT
TTCCTTTGGGAACAAAGAACACAAGTCGGACGAAGTGTTGAAACTCAACC
CCCGTGGTCAGGTACCCACCTTCAAGCATGGAGATGTCGTCGTGAACGAG
TCACTGGCGATCTCTCTGTACCTTGAGAACACCTTCAAAAACCAGGGGAC
CAAACTTCTCCCGGACGACCCTGCCCAGCTGGCGCTGGTACTGTGGAGAA
CGATGGAGGTGGACAACATCAGAGATAAAGCCATCGGTGGCATCTTCATC
TATACTATCCGAACAAAACCCGAGGATAGAGATGAGGCTGTACTCAAGGA
GAAAAAGAAGGCCGTAGCCGAGGAGCTAAAAATGTGGGAAGGGTATCTTG
CACAGCACGACGGCCCCTACATAGCCGGGAAAGACTTCACCCTGGCCGAT
GCCTCATTGTTCCCGATGATTGCATTCGTCGTGCGCAATCAGCTGCCTCT
GAAGGAACGCTTTCCTCGTCTGGCCAGCTACTATGAACGGCTGAAGGAAC
GTCCCTCCGTGAAGACGTCCTGGCCGCCTCACTGGCTGACCACACCCGAC
CCGGACCTGATGAAGGATGTGTGAATGGCGTCTGATATGACCCTGTACTG
GGGCTCTGGCAGTGCCCCCTCCTGGCGGGCTATGATCTGCCTGGAGGAAA
AGGGGCTGTCAGGATACACCAGCAAGCTTCTTTCCTTTGGGAACAAAGAA
CACAAGTCGGACGAAGTGTTGAAACTCAACCCCCGTGGTCAGGTACCCAC
CTTCAAGCATGGAGATGTCGTCGTGAACGAGTCACTGGCGATCTCTCTGT
ACCTTGAGAACACCTTCAAAAACCAGGGGACCAAACTTCTCCCGGACGAC
CCTGCCCAGCTGGCGCTGGTACTGTGGAGAACGATGGAGGTGGACAACAT
CAGAGATAAAGCCATCGGTGGCATCTTCATCTATACTATCCGAACAAAAC
CCGAGGATAGAGATGAGGCTGTACTCAAGGAGAAAAAGAAGGCCGTAGCC
GAGGAGCTAAAAATGTGGGAAGGGTATCTTGCACAGCACGACGGCCCCTA
CATAGCCGGGAAAGACTTCACCCTGGCCGATGCCTCATTGTTCCCGATGA
TTGCATTCGTCGTGCGCAATCAGCTGCCTCTGAAGGAACGCTTTCCTCGT
CTGGCCAGCTACTATGAACGGCTGAAGGAACGTCCCTCCGTGAAGACGTC
CTGGCCGCCTCACTGGCTGACCACACCCGACCCGGACCTGATGAAGGATG
TGTGAATGGCGTCTGATATGACCCTGTACTGGGGCTCTGGCAGTGCCCCC
TCCTGGCGGGCTATGATCTGCCTGGAGGAAAAGGGGCTGTCAGGATACAC
CAGCAAGCTTCTTTCCTTTGGGAACAAAGAACACAAGTCGGACGAAGTGT
TGAAACTCAACCCCCGTGGTCAGGTACCCACCTTCAAGCATGGAGATGTC
GTCGTGAACGAGTCACTGGCGATCTCTCTGTACCTTGAGAACACCTTCAA
AAACCAGGGGACCAAACTTCTCCCGGACGACCCTGCCCAGCTGGCGCTGG
TACTGTGGAGAACGATGGAGGTGGACAACATCAGAGATAAAGCCATCGGT
GGCATCTTCATCTATACTATCCGAACAAAACCCGAGGATAGAGATGAGGC
TGTACTCAAGGAGAAAAAGAAGGCCGTAGCCGAGGAGCTAAAAATGTGGG
AAGGGTATCTTGCACAGCACGACGGCCCCTACATAGCCGGGAAAGACTTC
ACCCTGGCCGATGCCTCATTGTTCCCGATGATTGCATTCGTCGTGCGCAA
TCAGCTGCCTCTGAAGGAACGCTTTCCTCGTCTGGCCAGCTACTATGAAC
GGCTGAAGGAACGTCCCTCCGTGAAGACGTCCTGGCCGCCTCACTGGCTG
ACCACACCCGACCCGGACCTGATGAAGGATGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000123 | genome | Sc0000123:67491..70549 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96887_cuf5 |
| Biotype | protein_coding |
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