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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96883_cuf2 >transcript:BL96883_cuf2-protein ID=transcript:BL96883_cuf2-protein|Name=transcript:BL96883_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=218bp
MAHLAASTVVPIVSTESPTETSSTDMTLLSVSTVEPIVSTESLTQTSRAD
MTTASLTTSVFTVSTSAQPDNTTMHTTVNPTKEADIEDCIHDVDICHENA
TCINTTSGHACVCRRGFQGDGRNCSDIDECSTQPPVPDSAAMPGEISRHG
CSDVCVNTVGSYHCTCPEYFTLKGDGKTCEAEESCTASANPCRPTVHSKC
AVANGTYVCSCSPGFHLA Run BLAST on NCBI mRNA from alignment at Sc0000241:65512..67480- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96883_cuf2 ID=transcript:BL96883_cuf2|Name=transcript:BL96883_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1969bp|location=Sequence derived from alignment at Sc0000241:65512..67480- (Branchiostoma lanceolatum)
CAACGTTCTCACACACTCGCAGCAAGCCAGCCCACTTCCACGACCTTACA
ACCAGGACTGATTCCAGATACCACAACAAGCCCAGTCGCTGATGTCACGA
CAGAAATTATGTCGGCTACGGAAACGTTAAATGACTTTTCTGTGCCAGTC
ACAGCAGTGGACCATCTGATGACCCGCCTCTCTGTAAACACGGTCGANTA
AGCACGGTCGAGCCAATTATATCAACAGAAGCACTAACAGAAACGTCAAG
TACAGACATGGCCCACCTGGCTGCGAGCACGGTCGTGCCAATCGTATCAA
CAGAATCACCAACGGAAACATCAAGTACAGACATGACCCTCCTGTCCGTA
AGCACGGTCGAGCCAATCGTATCAACAGAATCACTAACACAAACGTCACG
TGCAGATATGACTACGGCATCCCTTACTACCAGTGTTTTCACCGTCAGTA
CTTCAGCCCAACCTGACAACACAACCATGCATACCACGGTCAATCCAACC
AAGGAAGCAGGTATGCACTCAAACTGACGCACTGAAGACCTCTGAGCTGT
CCCGTGTTTCCTGCTGTGTTACTTCTCTAGTCTGTCACCGGTGCACATCT
TGGAGTAGCCAAACTCGCCCTTCTGCACCTCTGTGGCCGTTCGTCACTAT
CTTCTGCCACTTCAAAAATAAGACTCCTTGCATCCTTTCTCACTTTTTTC
TTTCCATCTAACATCAGCTGACCTCTTCTTTAGTGCGAAAGATACAGTTC
TGACAAGAAACCAACCTCCGTTGTGATTATGAAAGTCTTGCAAAAGCTCA
TGATATATAGTTATTTTGCAATATCTGATACACATATGCAACACATAAAT
GATTCCCACCTTTGTCAGTTTGTGTTGCACTAACTTAAGATACCTCAGAC
AAAGACGAACATTTTCATGCTAAAATGATTAGTTCTACGTAGTTACATAG
ATGACAATTATTTCTTCTAGACATTGAAGACTGCATCCATGACGTCGACA
TTTGCCACGAAAACGCGACATGTATCAACACAACATCCGGCCACGCCTGC
GTCTGTAGGAGAGGCTTTCAGGGAGATGGTCGAAACTGTTCTGGTAAGCC
TATCTATCATTACCATTATTGTTATAGCTGATTGAGTGATACGTAAACCA
ATGTGTGTTCATATCACACGGATACCAGGCATTTTTGCCAACTTCGAGAC
GGTCTGGTACAGAATGCATAAAAGTTATCATATGCAAAATCTTTGTATGT
CTGAAGACTATCAAATATCATGTATGGAGATCAGCAGCATGGTTTTCGGG
AAAGACATGCACAGATGACATAGCAACAAGGACACAGTGGAAATCAGGTT
AAGTAATAGCACATTGTATATGTTTCAGACATAGATGAGTGCTCCACACA
GCCACCTGTACCGGACTCGGCTGCGATGCCTGGAGAGATTTCCCGCCACG
GCTGTTCTGATGTTTGTGTGAACACCGTGGGGTCGTACCACTGCACATGT
CCGGAGTATTTCACGCTGAAGGGGGACGGGAAGACGTGCGAAGGTAGACA
ACTTTTCTACTTACCTTTAGGTGCACCCTGGCATTCGGCTATATTTGTTT
TTTCGTCCAGCATTGAAGGATAATGTAACCTTTAGCACACTGGAGTAGCC
GTTTGGTACCCCATTCCCTATTGAGTTGTACAGCAGGGAGAAGGTTAAGT
GTTACTTTTCAACCTAACGCGTCTTATCCGCCCGGCCGACACAACGCTAG
ACACACCCTTGTCGAACCTTTATTTTTTCAACAAAATGTTGAAGTATAAC
GTAATGTATCAGTGGATTGCCCAAATTATACCATGTCCATTGTGTACAAA
TGTAGCGGAAGAATCTTGTACGGCCAGCGCGAACCCCTGCAGACCAACTG
TCCACTCCAAATGTGCAGTCGCCAATGGAACATATGTCTGCAGCTGCTCC
CCTGGCTTTCACTTAGCAT Coding sequence (CDS) from alignment at Sc0000241:65512..67480- >transcript:BL96883_cuf2 ID=transcript:BL96883_cuf2|Name=transcript:BL96883_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2616bp|location=Sequence derived from alignment at Sc0000241:65512..67480- (Branchiostoma lanceolatum)
ATGGCCCACCTGGCTGCGAGCACGGTCGTGCCAATCGTATCAACAGAATC
ACCAACGGAAACATCAAGTACAGACATGACCCTCCTGTCCGTAAGCACGG
TCGAGCCAATCGTATCAACAGAATCACTAACACAAACGTCACGTGCAGAT
ATGACTACGGCATCCCTTACTACCAGTGTTTTCACCGTCAGTACTTCAGC
CCAACCTGACAACACAACCATGCATACCACGGTCAATCCAACCAAGGAAG
CAGACATTGAAGACTGCATCCATGACGTCGACATTTGCCACGAAAACGCG
ACATGTATCAACACAACATCCGGCCACGCCTGCGTCTGTAGGAGAGGCTT
TCAGGGAGATGGTCGAAACTGTTCTGACATAGATGAGTGCTCCACACAGC
CACCTGTACCGGACTCGGCTGCGATGCCTGGAGAGATTTCCCGCCACGGC
TGTTCTGATGTTTGTGTGAACACCGTGGGGTCGTACCACTGCACATGTCC
GGAGTATTTCACGCTGAAGGGGGACGGGAAGACGTGCGAAGCGGAAGAAT
CTTGTACGGCCAGCGCGAACCCCTGCAGACCAACTGTCCACTCCAAATGT
GCAGTCGCCAATGGAACATATGTCTGCAGCTGCTCCCCTGGCTTTCACTT
AGCAATGGCCCACCTGGCTGCGAGCACGGTCGTGCCAATCGTATCAACAG
AATCACCAACGGAAACATCAAGTACAGACATGACCCTCCTGTCCGTAAGC
ACGGTCGAGCCAATCGTATCAACAGAATCACTAACACAAACGTCACGTGC
AGATATGACTACGGCATCCCTTACTACCAGTGTTTTCACCGTCAGTACTT
CAGCCCAACCTGACAACACAACCATGCATACCACGGTCAATCCAACCAAG
GAAGCAGACATTGAAGACTGCATCCATGACGTCGACATTTGCCACGAAAA
CGCGACATGTATCAACACAACATCCGGCCACGCCTGCGTCTGTAGGAGAG
GCTTTCAGGGAGATGGTCGAAACTGTTCTGACATAGATGAGTGCTCCACA
CAGCCACCTGTACCGGACTCGGCTGCGATGCCTGGAGAGATTTCCCGCCA
CGGCTGTTCTGATGTTTGTGTGAACACCGTGGGGTCGTACCACTGCACAT
GTCCGGAGTATTTCACGCTGAAGGGGGACGGGAAGACGTGCGAAGCGGAA
GAATCTTGTACGGCCAGCGCGAACCCCTGCAGACCAACTGTCCACTCCAA
ATGTGCAGTCGCCAATGGAACATATGTCTGCAGCTGCTCCCCTGGCTTTC
ACTTAGCAATGGCCCACCTGGCTGCGAGCACGGTCGTGCCAATCGTATCA
ACAGAATCACCAACGGAAACATCAAGTACAGACATGACCCTCCTGTCCGT
AAGCACGGTCGAGCCAATCGTATCAACAGAATCACTAACACAAACGTCAC
GTGCAGATATGACTACGGCATCCCTTACTACCAGTGTTTTCACCGTCAGT
ACTTCAGCCCAACCTGACAACACAACCATGCATACCACGGTCAATCCAAC
CAAGGAAGCAGACATTGAAGACTGCATCCATGACGTCGACATTTGCCACG
AAAACGCGACATGTATCAACACAACATCCGGCCACGCCTGCGTCTGTAGG
AGAGGCTTTCAGGGAGATGGTCGAAACTGTTCTGACATAGATGAGTGCTC
CACACAGCCACCTGTACCGGACTCGGCTGCGATGCCTGGAGAGATTTCCC
GCCACGGCTGTTCTGATGTTTGTGTGAACACCGTGGGGTCGTACCACTGC
ACATGTCCGGAGTATTTCACGCTGAAGGGGGACGGGAAGACGTGCGAAGC
GGAAGAATCTTGTACGGCCAGCGCGAACCCCTGCAGACCAACTGTCCACT
CCAAATGTGCAGTCGCCAATGGAACATATGTCTGCAGCTGCTCCCCTGGC
TTTCACTTAGCAATGGCCCACCTGGCTGCGAGCACGGTCGTGCCAATCGT
ATCAACAGAATCACCAACGGAAACATCAAGTACAGACATGACCCTCCTGT
CCGTAAGCACGGTCGAGCCAATCGTATCAACAGAATCACTAACACAAACG
TCACGTGCAGATATGACTACGGCATCCCTTACTACCAGTGTTTTCACCGT
CAGTACTTCAGCCCAACCTGACAACACAACCATGCATACCACGGTCAATC
CAACCAAGGAAGCAGACATTGAAGACTGCATCCATGACGTCGACATTTGC
CACGAAAACGCGACATGTATCAACACAACATCCGGCCACGCCTGCGTCTG
TAGGAGAGGCTTTCAGGGAGATGGTCGAAACTGTTCTGACATAGATGAGT
GCTCCACACAGCCACCTGTACCGGACTCGGCTGCGATGCCTGGAGAGATT
TCCCGCCACGGCTGTTCTGATGTTTGTGTGAACACCGTGGGGTCGTACCA
CTGCACATGTCCGGAGTATTTCACGCTGAAGGGGGACGGGAAGACGTGCG
AAGCGGAAGAATCTTGTACGGCCAGCGCGAACCCCTGCAGACCAACTGTC
CACTCCAAATGTGCAGTCGCCAATGGAACATATGTCTGCAGCTGCTCCCC
TGGCTTTCACTTAGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000241 | genome | Sc0000241:65512..67480 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96883_cuf2 |
| Biotype | protein_coding |
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