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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96882_cuf1 >transcript:BL96882_cuf1-protein ID=transcript:BL96882_cuf1-protein|Name=transcript:BL96882_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=260bp
HNCHASAQCANTYGGFSCTCSDGYIGDGTNCTDVDECTSGTASCDENASC
ENTDGSYTCTCNENYESTVPESTGFMGQCREVRLFPDGLEGHRLFGNSTT
EGMSPLIEIPEGLPMPGGRLCNSAYILENGVIVITTLKASQRSAVRPTYR
HPTTDPNAFGETVCGVIAPFWADVIMGENYPSEVRYEVYQQETGRGRVRS
SLRVPPSRGLNKXAQQRTRQKCHTSSAVYAYRFGVRHNRYDDVRSCGHVE
ENDDGRRSCQ Run BLAST on NCBI mRNA from alignment at Sc0000241:62824..65317- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96882_cuf1 ID=transcript:BL96882_cuf1|Name=transcript:BL96882_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2494bp|location=Sequence derived from alignment at Sc0000241:62824..65317- (Branchiostoma lanceolatum)
CACAACTGCCATGCATCTGCTCAGTGCGCTAACACCTACGGTGGTTTCTC
TTGTACATGCTCAGATGGATACATTGGAGATGGAACCAACTGTACAGGTA
TACGTTATTGTTATTGTAATATAACAGTGGTATATCATTCCGTCTGAATT
ATTTTGCTTTTGCTGATATTCTCTTCACAACACGCCTACCACATTGCCCT
AATCTACAGTTAGATATAATGTTATACAGTCAAAGTTGCATTGATCTCAA
ACACACACTCAAGGAACGGAGGGGAAATGGTTTGTAAGTAGGGACAGTTA
CTCCAGACAAGAGGGTCTTAATTATGGACAGGACTGTTTTTATGTGGCTT
ATGGCTGGGAGCGTTGGCTGCGCCAGGTGGTTGGCCGGTCAGGTTTGACT
TACTATGCTTAGGCAGGGTTTACACATGCATTTCCAAGCACACTCGGAGT
GTGAATGTACTTGGAAACGCGCGTGTAAACCGGGCCTTCATCAGAATCAC
CTCTTTGTTTCTCAGATGTGGATGAGTGCACCTCCGGAACAGCCTCTTGT
GACGAGAACGCCTCCTGTGAGAACACAGATGGTTCCTACACCTGCACCTG
TAATGAGAACTATGAGAGCACCGTGCCAGAAAGTACCGGATTCATGGGCC
AATGCAGAGGTATGTGTGTCCAGACTTTTCCATCATTAGTGCAGCATAAA
AAAGCTACCGTCTTGATTTAGTCTTGTGTTTGTATCCTCTTTGTGTATCA
TATTCACCCATATTGACCATATCCTGACGCTGTTACAGAACACACGCATC
TGTACATTTACTACGTTCCCATCGCTGTAGCTCATACATAATCAGTGAGT
AGTTGATTAGTGCACACATTCTAGCCACTGTCATTATAGGATTATTCGAA
TCAGACATAGTAAAAATCCCCCAAATGTGGTAGAGTTTGCAGTTAGTTTA
ACTTTTGTTCTCTCCTTGTCAGAGGTTCGCCTGTTCCCGGATGGTCTGGA
AGGACACCGGTTGTTCGGTAACTCTACAACAGAGGGGATGTCTCCACTCA
TCGAAATACCGGAGGGTTTGCCGATGCCTGGGGGGCGATTATGCAACTCT
GCCTACGTAGGTCCACTTTTTAATCAAGCTACAGAACAAGGCTTAACATA
TTAAGGAAAAGGATTCAACACTTTGTCAGAACAAGAGACGGGCTAAGATA
GACCCTGGAACAAGTTGTCGAAATTCTTGGTACACGATTTTGTTTTCATA
ACTTTCCTACGAAAGTGATTGAAAAGAACCTCATCATCTTCGTTTGAAGC
AAACTTAATGGCAGTACAAATGTCCATGGACATCAGCAAGCTAATCATCC
CCAAATCTATATACCACCTTGTTTAACACTTGCCAAGGAACAACGAGAAA
GATTCCAACTGACCTTGTAGATTTTATTTGAAGACCACGTGTTCTGTTTT
GTAGATCCTGGAGAATGGGGTGATTGTGATAACGACGCTGAAAGCATCTC
AGCGTAGCGCTGTGAGACCCACCTACCGACACCCCACTACAGACCCGAAC
GCGTTCGGAGAAACCGTCTGTGGGGTCATCGCGCCCTTCTGGGCTGACGT
CATCATGGGAGAGAACTATCCATCCGAGGTAATTATCTTTAGATATCATC
ATCATCATCGGTTGTCTGTGCAGTAGGCGACAGTGAGTTTCGACCAGTTC
CTTTTGTAGTTGGCCAGTTATACAATCTGCTGTGGTGTGAGTTGACCGTA
GTTGTCTCCTAGGAGCTGCTGAATGTATTGCAGATAGGTGGTTGGCGTCT
GCGTCTGCCATGAGATGTTTAGATAATGACATCTATCAAGTGAGTAAAGA
TAAAATGTCACTCAGTAAGATGAAACCAAACAAACCCCAGAGATATCAAG
TACAGATCATAATGAATAATATACGTGAATATGCCTGGCAACTATAGATT
TTGCCTATTATCTTTGGCCTTTTATGTTTTGTACCCTGTAGGTCCGATAC
GAAGTGTACCAACAAGAAACGGGCCGTGGACGCGTACGGAGCTCGCTGCG
AGTACCGCCCAGCAGAGGACTCAACAAAAANGCCCAGCAGAGGACTCGAC
AAAAATGCCATACTTCGTCGGCTGTCTATGCTTATAGGGTAGCTATTCAC
CACTACTTTACACAGTAGTATCAGTAGCAGCAATAAGTGAGTGAAGGATG
TCCTTATCCTCNTAAGTGAGCGAAGGATATCGTTATCCTCAGAAACACGC
CAGATTAACTAACCAAAATATGTGTCAACATGCGTCAAGTATCTCTAGTG
GGTGTCAAAAAACATGAACGTATATAAACAAGTTCGGCAGATTTGAATTG
CACATTTCATTTGAATTGCTTGAATTCATTTTTTCAACTTGTATCCCTTC
TTTAAAAGTTTGGAGTTCGGCACAACCGATATGATGACGTACGCTCTTGT
GGTCACGTGGAAGAAAATGACGATGGCAGGAGATCCTGCCAGGG Coding sequence (CDS) from alignment at Sc0000241:62824..65317- >transcript:BL96882_cuf1 ID=transcript:BL96882_cuf1|Name=transcript:BL96882_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4680bp|location=Sequence derived from alignment at Sc0000241:62824..65317- (Branchiostoma lanceolatum)
CACAACTGCCATGCATCTGCTCAGTGCGCTAACACCTACGGTGGTTTCTC
TTGTACATGCTCAGATGGATACATTGGAGATGGAACCAACTGTACAGATG
TGGATGAGTGCACCTCCGGAACAGCCTCTTGTGACGAGAACGCCTCCTGT
GAGAACACAGATGGTTCCTACACCTGCACCTGTAATGAGAACTATGAGAG
CACCGTGCCAGAAAGTACCGGATTCATGGGCCAATGCAGAGAGGTTCGCC
TGTTCCCGGATGGTCTGGAAGGACACCGGTTGTTCGGTAACTCTACAACA
GAGGGGATGTCTCCACTCATCGAAATACCGGAGGGTTTGCCGATGCCTGG
GGGGCGATTATGCAACTCTGCCTACATCCTGGAGAATGGGGTGATTGTGA
TAACGACGCTGAAAGCATCTCAGCGTAGCGCTGTGAGACCCACCTACCGA
CACCCCACTACAGACCCGAACGCGTTCGGAGAAACCGTCTGTGGGGTCAT
CGCGCCCTTCTGGGCTGACGTCATCATGGGAGAGAACTATCCATCCGAGG
TCCGATACGAAGTGTACCAACAAGAAACGGGCCGTGGACGCGTACGGAGC
TCGCTGCGAGTACCGCCCAGCAGAGGACTCAACAAAAANGCCCAGCAGAG
GACTCGACAAAAATGCCATACTTCGTCGGCTGTCTATGCTTATAGGTTTG
GAGTTCGGCACAACCGATATGATGACGTACGCTCTTGTGGTCACGTGGAA
GAAAATGACGATGGCAGGAGATCCTGCCAGCACAACTGCCATGCATCTGC
TCAGTGCGCTAACACCTACGGTGGTTTCTCTTGTACATGCTCAGATGGAT
ACATTGGAGATGGAACCAACTGTACAGATGTGGATGAGTGCACCTCCGGA
ACAGCCTCTTGTGACGAGAACGCCTCCTGTGAGAACACAGATGGTTCCTA
CACCTGCACCTGTAATGAGAACTATGAGAGCACCGTGCCAGAAAGTACCG
GATTCATGGGCCAATGCAGAGAGGTTCGCCTGTTCCCGGATGGTCTGGAA
GGACACCGGTTGTTCGGTAACTCTACAACAGAGGGGATGTCTCCACTCAT
CGAAATACCGGAGGGTTTGCCGATGCCTGGGGGGCGATTATGCAACTCTG
CCTACATCCTGGAGAATGGGGTGATTGTGATAACGACGCTGAAAGCATCT
CAGCGTAGCGCTGTGAGACCCACCTACCGACACCCCACTACAGACCCGAA
CGCGTTCGGAGAAACCGTCTGTGGGGTCATCGCGCCCTTCTGGGCTGACG
TCATCATGGGAGAGAACTATCCATCCGAGGTCCGATACGAAGTGTACCAA
CAAGAAACGGGCCGTGGACGCGTACGGAGCTCGCTGCGAGTACCGCCCAG
CAGAGGACTCAACAAAAANGCCCAGCAGAGGACTCGACAAAAATGCCATA
CTTCGTCGGCTGTCTATGCTTATAGGTTTGGAGTTCGGCACAACCGATAT
GATGACGTACGCTCTTGTGGTCACGTGGAAGAAAATGACGATGGCAGGAG
ATCCTGCCAGCACAACTGCCATGCATCTGCTCAGTGCGCTAACACCTACG
GTGGTTTCTCTTGTACATGCTCAGATGGATACATTGGAGATGGAACCAAC
TGTACAGATGTGGATGAGTGCACCTCCGGAACAGCCTCTTGTGACGAGAA
CGCCTCCTGTGAGAACACAGATGGTTCCTACACCTGCACCTGTAATGAGA
ACTATGAGAGCACCGTGCCAGAAAGTACCGGATTCATGGGCCAATGCAGA
GAGGTTCGCCTGTTCCCGGATGGTCTGGAAGGACACCGGTTGTTCGGTAA
CTCTACAACAGAGGGGATGTCTCCACTCATCGAAATACCGGAGGGTTTGC
CGATGCCTGGGGGGCGATTATGCAACTCTGCCTACATCCTGGAGAATGGG
GTGATTGTGATAACGACGCTGAAAGCATCTCAGCGTAGCGCTGTGAGACC
CACCTACCGACACCCCACTACAGACCCGAACGCGTTCGGAGAAACCGTCT
GTGGGGTCATCGCGCCCTTCTGGGCTGACGTCATCATGGGAGAGAACTAT
CCATCCGAGGTCCGATACGAAGTGTACCAACAAGAAACGGGCCGTGGACG
CGTACGGAGCTCGCTGCGAGTACCGCCCAGCAGAGGACTCAACAAAAANG
CCCAGCAGAGGACTCGACAAAAATGCCATACTTCGTCGGCTGTCTATGCT
TATAGGTTTGGAGTTCGGCACAACCGATATGATGACGTACGCTCTTGTGG
TCACGTGGAAGAAAATGACGATGGCAGGAGATCCTGCCAGCACAACTGCC
ATGCATCTGCTCAGTGCGCTAACACCTACGGTGGTTTCTCTTGTACATGC
TCAGATGGATACATTGGAGATGGAACCAACTGTACAGATGTGGATGAGTG
CACCTCCGGAACAGCCTCTTGTGACGAGAACGCCTCCTGTGAGAACACAG
ATGGTTCCTACACCTGCACCTGTAATGAGAACTATGAGAGCACCGTGCCA
GAAAGTACCGGATTCATGGGCCAATGCAGAGAGGTTCGCCTGTTCCCGGA
TGGTCTGGAAGGACACCGGTTGTTCGGTAACTCTACAACAGAGGGGATGT
CTCCACTCATCGAAATACCGGAGGGTTTGCCGATGCCTGGGGGGCGATTA
TGCAACTCTGCCTACATCCTGGAGAATGGGGTGATTGTGATAACGACGCT
GAAAGCATCTCAGCGTAGCGCTGTGAGACCCACCTACCGACACCCCACTA
CAGACCCGAACGCGTTCGGAGAAACCGTCTGTGGGGTCATCGCGCCCTTC
TGGGCTGACGTCATCATGGGAGAGAACTATCCATCCGAGGTCCGATACGA
AGTGTACCAACAAGAAACGGGCCGTGGACGCGTACGGAGCTCGCTGCGAG
TACCGCCCAGCAGAGGACTCAACAAAAANGCCCAGCAGAGGACTCGACAA
AAATGCCATACTTCGTCGGCTGTCTATGCTTATAGGTTTGGAGTTCGGCA
CAACCGATATGATGACGTACGCTCTTGTGGTCACGTGGAAGAAAATGACG
ATGGCAGGAGATCCTGCCAGCACAACTGCCATGCATCTGCTCAGTGCGCT
AACACCTACGGTGGTTTCTCTTGTACATGCTCAGATGGATACATTGGAGA
TGGAACCAACTGTACAGATGTGGATGAGTGCACCTCCGGAACAGCCTCTT
GTGACGAGAACGCCTCCTGTGAGAACACAGATGGTTCCTACACCTGCACC
TGTAATGAGAACTATGAGAGCACCGTGCCAGAAAGTACCGGATTCATGGG
CCAATGCAGAGAGGTTCGCCTGTTCCCGGATGGTCTGGAAGGACACCGGT
TGTTCGGTAACTCTACAACAGAGGGGATGTCTCCACTCATCGAAATACCG
GAGGGTTTGCCGATGCCTGGGGGGCGATTATGCAACTCTGCCTACATCCT
GGAGAATGGGGTGATTGTGATAACGACGCTGAAAGCATCTCAGCGTAGCG
CTGTGAGACCCACCTACCGACACCCCACTACAGACCCGAACGCGTTCGGA
GAAACCGTCTGTGGGGTCATCGCGCCCTTCTGGGCTGACGTCATCATGGG
AGAGAACTATCCATCCGAGGTCCGATACGAAGTGTACCAACAAGAAACGG
GCCGTGGACGCGTACGGAGCTCGCTGCGAGTACCGCCCAGCAGAGGACTC
AACAAAAANGCCCAGCAGAGGACTCGACAAAAATGCCATACTTCGTCGGC
TGTCTATGCTTATAGGTTTGGAGTTCGGCACAACCGATATGATGACGTAC
GCTCTTGTGGTCACGTGGAAGAAAATGACGATGGCAGGAGATCCTGCCAG
CACAACTGCCATGCATCTGCTCAGTGCGCTAACACCTACGGTGGTTTCTC
TTGTACATGCTCAGATGGATACATTGGAGATGGAACCAACTGTACAGATG
TGGATGAGTGCACCTCCGGAACAGCCTCTTGTGACGAGAACGCCTCCTGT
GAGAACACAGATGGTTCCTACACCTGCACCTGTAATGAGAACTATGAGAG
CACCGTGCCAGAAAGTACCGGATTCATGGGCCAATGCAGAGAGGTTCGCC
TGTTCCCGGATGGTCTGGAAGGACACCGGTTGTTCGGTAACTCTACAACA
GAGGGGATGTCTCCACTCATCGAAATACCGGAGGGTTTGCCGATGCCTGG
GGGGCGATTATGCAACTCTGCCTACATCCTGGAGAATGGGGTGATTGTGA
TAACGACGCTGAAAGCATCTCAGCGTAGCGCTGTGAGACCCACCTACCGA
CACCCCACTACAGACCCGAACGCGTTCGGAGAAACCGTCTGTGGGGTCAT
CGCGCCCTTCTGGGCTGACGTCATCATGGGAGAGAACTATCCATCCGAGG
TCCGATACGAAGTGTACCAACAAGAAACGGGCCGTGGACGCGTACGGAGC
TCGCTGCGAGTACCGCCCAGCAGAGGACTCAACAAAAANGCCCAGCAGAG
GACTCGACAAAAATGCCATACTTCGTCGGCTGTCTATGCTTATAGGTTTG
GAGTTCGGCACAACCGATATGATGACGTACGCTCTTGTGGTCACGTGGAA
GAAAATGACGATGGCAGGAGATCCTGCCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000241 | genome | Sc0000241:62824..65317 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96882_cuf1 |
| Biotype | protein_coding |
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