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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96871_cuf6 >transcript:BL96871_cuf6-protein ID=transcript:BL96871_cuf6-protein|Name=transcript:BL96871_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=256bp
DTYLRLTADYSGASVGMVGDVLELDEWNNDVIRPVRLLCPKELFGLRDVT
FDLGPKQTKIYPDVDTTLTFDLTIENNSPRDLPATFPGNEHFRLEVAMVA
LMNDGRLIGGDVSVIKDLILPTNGYDAIPAGTALQLTGVEATIDGDVLTT
GYVYTMGSRPTHMQIVVSPTDGSEESVFTRENNMVKVPISYGDVARGNQI
DLAGESVTFSTARIVCGRDPLDITADVSVTVGGYLSSAVRATDYTAALYW
SLDRVW Run BLAST on NCBI mRNA from alignment at Sc0000007:189888..193652- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96871_cuf6 ID=transcript:BL96871_cuf6|Name=transcript:BL96871_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=3765bp|location=Sequence derived from alignment at Sc0000007:189888..193652- (Branchiostoma lanceolatum)
CGACACATACCTCCGCCTGACAGCAGACTACAGTAAGATAAAAACATGTT
TATCTAATTGCATAAAATTGTAGTTGTTTCTTAATTGTTCTTATGTTTTT
TTAGTATTGAATATGGAAAATTGTTAATAGTTTCACCTGTTTGGTAAGTC
ACTGAATAGAAAGACTTTTTGTACTCTTAGAATAAATACTTGGTTGTGTA
CAAAGAGTCTTTTTATTCAAAGAAAAATAAGTCAATTGCATCACATCCTT
GATAGAATTTACCAAATAATGGTATACAAACAAATAGCAACGCATCTAGG
GTGTCGCCAAAATAGACATTAAAAGTGCAGCATTTTACAAAAGCGTCGCC
TCTTCATCTGTACTACTGTAGTGATTGCTTACTTTTTGTCCGTGTGTTAT
GGCAAAAAAGCAAAATATTCACTAAAATTAGCTTGAAAACTTTCTTAGAG
AAGTTCCTTTATTTGGAAATTAAAGTCATAATCCCCAGCATGAGTCACCA
GACATATATTTGCCGTTGATATTACTACGGAAAGAAGATCATGAATAAAT
AATGCCTCTGGGTGTGAGGCGTAGAAAAGCACATTGTCTGATGTCTGACG
GCTTGTGCTGTGTCCTCCCTTTTCTGGGAGCTAATAAATTATTCAAGACC
GTTTGAGTCATCGTTATGGGTACAAACGACCACTTAATGGCCATAAATAT
GTTCTTGCTTTTTCAAACAATCAGTCAAAAGAGTAGAAATAGTACACTCA
CTGTAGTTGTTGAATGTCTCTCCTTGGTACTGAAAGCTTAACTGTGAGGA
AATAGTTAACTTTCCACTTAATGGCCATAAATATCTTATTACTTTTTCAG
AATACCAGTCAAAATGGTAGAGATAGTACCTTCACTGTTATATTTAGTGT
CTCTCCTTGGTACTGAAAGCTTAGCTGTGATAGAATAGATAACTTTCCTG
TGACAAGTGTTCACGATGTCCCATTAAGAGGTACAAACAACCCCCCTACT
TTGCCCCTGATGGGGTCATGTGGGTGTCATTACCTACGAAATGAGATGAG
GTCCGCTTAGTGACCATGAATATGTTGTTGTTGTAGAGAAGCAGTCTTGA
AATAAATGCAGAACCTTCACTGTAATTCCTGACAAGTGTGCTTGGTGCTC
TGATAGAATAGTTAACTTCCCTGTGTCAAGTCTTACATGTAAAAGTGGAT
CTCAGGTCTATGAAAAATCCCATTACCACATGTAAAAATGGCCATACTAG
TGAAATAGTTTTGTATATGTCATAATCGCAACTTAAGTAATTTTTTTTCT
TTCCGCTAGGTGGCGCATCTGTTGGCATGGTGGGCGATGTTCTGGAGTTG
GATGAATGGAACAATGACGTCATCAGGCCTGTACGCCTGCTTTGTCCAAA
AGGTACTTATAAAAGATTCAGATACAATGACACGAAAATGATCTAGTTTT
AATTTTGTGTGATATAAGTAAACAAAGAAAGAATAATTTTCAGCCGTAGC
TTCAATAATTTTATTTTCCAATTATGCAGGACTTTAAAGGAAAGCTGCAC
AAAAAATTGAAAATCCTTCTATGCTATGCTTAATATATTCCAAAGTCAAA
TTCTTACTTCAAGTTGTTTCACATAAGTCCGTCATAGTTCTGGGATTTTC
TACAGTTTGCAACTTATGCCGTGCTGACGCCTTCTCACCTGATAATTGAA
TTATATTACGTCAGTGTTTCAAATTTTTTACCTGATGATTGTATTATATG
ACGTCAGTGTTCTGAAATTCAATCATCAGGTGAAAAATTTGAAACACTGA
CGTCATATAATTCAATTATCTGGCGAGAAGGCGTCAGCACGGCATAAGTT
GCAAACTGTGGAAAATCCCAGAACTATGACGGACTTATGTGAAACAACTT
GAATTAAGAATTTGACTTTGGAATATATTAAGCATAGCATAGAAGGATTT
TCAATTTTTTGTGCAGCTTTCCTTTAAGGTGTGCGCTTGATTAAACTCTT
GTAATCTCATAGTTAGACAAGAAAGATTAGGCACTAGGACTAACAATTTA
CTTCAAAGTCTTAAAGCTACTTTTTTCTTTCTTTCCAGAGCTGTTTGGTC
TGAGGGATGTAACATTCGACCTTGGACCCAAACAAACCAAGATTTACCCG
GATGTGGACACGACCTTGACGTTTGACCTGACCATCGAGAACAACAGTCC
GCGTGACCTTCCCGCCACGTTTCCCGGCAACGAACACTTCCGGTTGGAGG
TTGCCATGGTAGCACTGATGAATGATGGGAGACTTATCGGTGGAGACGTG
TCGGTGATCAAAGACCTGATTCTCCCTACCAACGGGTACGACGCAATCCC
AGCAGGCACTGCTCTCCAGCTGACAGGAGTGGAAGCTACCATTGACGGGG
ATGTTCTCACCACTGGTTATGTGTACACCATGGGATCCCGTCCCACCCAC
ATGCAGATAGTGGTATCACCCACGGACGGGTCTGAGGAAAGCGTCTTTAC
CAGAGAGAACAACATGGTGAAAGTTCCCATCAGCTACGGGGATGTCGCAA
GAGGAAGTACGTTTCCTTCTTTCTTTCTTTTTTGCTTCAGTATTTTAAGA
CTTCAGTGTATAGAGAAGATACTAAGTACTTGCTTGCTTGGTTATGTCAA
GTTCTGCCCCAACTACACCCACAAACCACAGTGCCTTTCCAAAGCATTTA
GTTGTTTTAGCACTTTGTAAAACTTGTATCATCTAATGTTTTTGGCTTGC
TGTCTTTCTGTGTTCCTGTCTATGTGGTTTCTGTGATTCAAACCACACAC
AATGCAACAATGTGCTCAGTCAATGCTGCTGTTTTTGTCTGTGTGCATGT
GTGTGTGTTGTGTGAGCCTGTGTGTGTCTGTGTCTGTCTGTCTGTGTGTG
TGTGTGTGCATGTGTGTCTGTGTGACTGTGTGTGTGAGCCTGTACAGTGT
GTGTGTGTCTGTCTGTGTGTGTGTCTATGTGTGTGTGTGTGTCTTTCTTT
GTGTGTTGTTACACCGCAATTTCTGTATTGTCTGCTAGAGGAAGGGGTTC
AATTTCTGATTGTTGTGTTTGACTGTATTCATTTTCACCTTCCAGATCAG
ATCGACCTTGCAGGAGAGTCTGTGACCTTCAGCACAGCGAGGATCGTGTG
TGGCCGGGACCCGCTGGACATCACCGCCGACGTGTCGGTCACCGTGGGGG
GCTACCTCAGCTCTGCCGTCCGAGCCACGGACTACACCGCCGCTCTCTAC
TGGTCACTGGACAGGGTGAGGAGAGATGATTTTGTTTGAACCCCTTGTTT
ATTCATGAGATGTTCAAATTGGCCTGCGGGCCACTTTTCATTGAAGTCAT
CAGGGAAGAAGTAGTGTCATAGCTGCTGCTCTCTACTGGTCACTGGACAG
GGTTAGCAGTGATGTCATATCTGATGTGGTTTTGTTCAGACAGAACTATA
GGCCAAAGCAAATAATAAAAGAGATGTTGTTTTTCAGTGATTGCTAAAGC
TAGAAATCTACAGCAGAGGAGAGGAAGTCTGTATTTCTTACACATGCAGT
TCAAGGGAGTAGATAAACATCTCTTTCATATTTTCATTCTCAAATCTATT
CATTTATTCCTCCAACTATCCATACTCTTATTCATCCATACATCCAGCCT
CCCTCCATCTATTCCTTTATTTTTTCATCTATTAATCCAGCTAAACCATC
CATCCATCTACAAGATAGCAGGCACGGTATTCTAACTCTGCTTTTGCTTC
TGATCCAGGTTTGGG Coding sequence (CDS) from alignment at Sc0000007:189888..193652- >transcript:BL96871_cuf6 ID=transcript:BL96871_cuf6|Name=transcript:BL96871_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=3840bp|location=Sequence derived from alignment at Sc0000007:189888..193652- (Branchiostoma lanceolatum)
GACACATACCTCCGCCTGACAGCAGACTACAGTGGCGCATCTGTTGGCAT
GGTGGGCGATGTTCTGGAGTTGGATGAATGGAACAATGACGTCATCAGGC
CTGTACGCCTGCTTTGTCCAAAAGAGCTGTTTGGTCTGAGGGATGTAACA
TTCGACCTTGGACCCAAACAAACCAAGATTTACCCGGATGTGGACACGAC
CTTGACGTTTGACCTGACCATCGAGAACAACAGTCCGCGTGACCTTCCCG
CCACGTTTCCCGGCAACGAACACTTCCGGTTGGAGGTTGCCATGGTAGCA
CTGATGAATGATGGGAGACTTATCGGTGGAGACGTGTCGGTGATCAAAGA
CCTGATTCTCCCTACCAACGGGTACGACGCAATCCCAGCAGGCACTGCTC
TCCAGCTGACAGGAGTGGAAGCTACCATTGACGGGGATGTTCTCACCACT
GGTTATGTGTACACCATGGGATCCCGTCCCACCCACATGCAGATAGTGGT
ATCACCCACGGACGGGTCTGAGGAAAGCGTCTTTACCAGAGAGAACAACA
TGGTGAAAGTTCCCATCAGCTACGGGGATGTCGCAAGAGGAAATCAGATC
GACCTTGCAGGAGAGTCTGTGACCTTCAGCACAGCGAGGATCGTGTGTGG
CCGGGACCCGCTGGACATCACCGCCGACGTGTCGGTCACCGTGGGGGGCT
ACCTCAGCTCTGCCGTCCGAGCCACGGACTACACCGCCGCTCTCTACTGG
TCACTGGACAGGGTTTGGGACACATACCTCCGCCTGACAGCAGACTACAG
TGGCGCATCTGTTGGCATGGTGGGCGATGTTCTGGAGTTGGATGAATGGA
ACAATGACGTCATCAGGCCTGTACGCCTGCTTTGTCCAAAAGAGCTGTTT
GGTCTGAGGGATGTAACATTCGACCTTGGACCCAAACAAACCAAGATTTA
CCCGGATGTGGACACGACCTTGACGTTTGACCTGACCATCGAGAACAACA
GTCCGCGTGACCTTCCCGCCACGTTTCCCGGCAACGAACACTTCCGGTTG
GAGGTTGCCATGGTAGCACTGATGAATGATGGGAGACTTATCGGTGGAGA
CGTGTCGGTGATCAAAGACCTGATTCTCCCTACCAACGGGTACGACGCAA
TCCCAGCAGGCACTGCTCTCCAGCTGACAGGAGTGGAAGCTACCATTGAC
GGGGATGTTCTCACCACTGGTTATGTGTACACCATGGGATCCCGTCCCAC
CCACATGCAGATAGTGGTATCACCCACGGACGGGTCTGAGGAAAGCGTCT
TTACCAGAGAGAACAACATGGTGAAAGTTCCCATCAGCTACGGGGATGTC
GCAAGAGGAAATCAGATCGACCTTGCAGGAGAGTCTGTGACCTTCAGCAC
AGCGAGGATCGTGTGTGGCCGGGACCCGCTGGACATCACCGCCGACGTGT
CGGTCACCGTGGGGGGCTACCTCAGCTCTGCCGTCCGAGCCACGGACTAC
ACCGCCGCTCTCTACTGGTCACTGGACAGGGTTTGGGACACATACCTCCG
CCTGACAGCAGACTACAGTGGCGCATCTGTTGGCATGGTGGGCGATGTTC
TGGAGTTGGATGAATGGAACAATGACGTCATCAGGCCTGTACGCCTGCTT
TGTCCAAAAGAGCTGTTTGGTCTGAGGGATGTAACATTCGACCTTGGACC
CAAACAAACCAAGATTTACCCGGATGTGGACACGACCTTGACGTTTGACC
TGACCATCGAGAACAACAGTCCGCGTGACCTTCCCGCCACGTTTCCCGGC
AACGAACACTTCCGGTTGGAGGTTGCCATGGTAGCACTGATGAATGATGG
GAGACTTATCGGTGGAGACGTGTCGGTGATCAAAGACCTGATTCTCCCTA
CCAACGGGTACGACGCAATCCCAGCAGGCACTGCTCTCCAGCTGACAGGA
GTGGAAGCTACCATTGACGGGGATGTTCTCACCACTGGTTATGTGTACAC
CATGGGATCCCGTCCCACCCACATGCAGATAGTGGTATCACCCACGGACG
GGTCTGAGGAAAGCGTCTTTACCAGAGAGAACAACATGGTGAAAGTTCCC
ATCAGCTACGGGGATGTCGCAAGAGGAAATCAGATCGACCTTGCAGGAGA
GTCTGTGACCTTCAGCACAGCGAGGATCGTGTGTGGCCGGGACCCGCTGG
ACATCACCGCCGACGTGTCGGTCACCGTGGGGGGCTACCTCAGCTCTGCC
GTCCGAGCCACGGACTACACCGCCGCTCTCTACTGGTCACTGGACAGGGT
TTGGGACACATACCTCCGCCTGACAGCAGACTACAGTGGCGCATCTGTTG
GCATGGTGGGCGATGTTCTGGAGTTGGATGAATGGAACAATGACGTCATC
AGGCCTGTACGCCTGCTTTGTCCAAAAGAGCTGTTTGGTCTGAGGGATGT
AACATTCGACCTTGGACCCAAACAAACCAAGATTTACCCGGATGTGGACA
CGACCTTGACGTTTGACCTGACCATCGAGAACAACAGTCCGCGTGACCTT
CCCGCCACGTTTCCCGGCAACGAACACTTCCGGTTGGAGGTTGCCATGGT
AGCACTGATGAATGATGGGAGACTTATCGGTGGAGACGTGTCGGTGATCA
AAGACCTGATTCTCCCTACCAACGGGTACGACGCAATCCCAGCAGGCACT
GCTCTCCAGCTGACAGGAGTGGAAGCTACCATTGACGGGGATGTTCTCAC
CACTGGTTATGTGTACACCATGGGATCCCGTCCCACCCACATGCAGATAG
TGGTATCACCCACGGACGGGTCTGAGGAAAGCGTCTTTACCAGAGAGAAC
AACATGGTGAAAGTTCCCATCAGCTACGGGGATGTCGCAAGAGGAAATCA
GATCGACCTTGCAGGAGAGTCTGTGACCTTCAGCACAGCGAGGATCGTGT
GTGGCCGGGACCCGCTGGACATCACCGCCGACGTGTCGGTCACCGTGGGG
GGCTACCTCAGCTCTGCCGTCCGAGCCACGGACTACACCGCCGCTCTCTA
CTGGTCACTGGACAGGGTTTGGGACACATACCTCCGCCTGACAGCAGACT
ACAGTGGCGCATCTGTTGGCATGGTGGGCGATGTTCTGGAGTTGGATGAA
TGGAACAATGACGTCATCAGGCCTGTACGCCTGCTTTGTCCAAAAGAGCT
GTTTGGTCTGAGGGATGTAACATTCGACCTTGGACCCAAACAAACCAAGA
TTTACCCGGATGTGGACACGACCTTGACGTTTGACCTGACCATCGAGAAC
AACAGTCCGCGTGACCTTCCCGCCACGTTTCCCGGCAACGAACACTTCCG
GTTGGAGGTTGCCATGGTAGCACTGATGAATGATGGGAGACTTATCGGTG
GAGACGTGTCGGTGATCAAAGACCTGATTCTCCCTACCAACGGGTACGAC
GCAATCCCAGCAGGCACTGCTCTCCAGCTGACAGGAGTGGAAGCTACCAT
TGACGGGGATGTTCTCACCACTGGTTATGTGTACACCATGGGATCCCGTC
CCACCCACATGCAGATAGTGGTATCACCCACGGACGGGTCTGAGGAAAGC
GTCTTTACCAGAGAGAACAACATGGTGAAAGTTCCCATCAGCTACGGGGA
TGTCGCAAGAGGAAATCAGATCGACCTTGCAGGAGAGTCTGTGACCTTCA
GCACAGCGAGGATCGTGTGTGGCCGGGACCCGCTGGACATCACCGCCGAC
GTGTCGGTCACCGTGGGGGGCTACCTCAGCTCTGCCGTCCGAGCCACGGA
CTACACCGCCGCTCTCTACTGGTCACTGGACAGGGTTTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000007 | genome | Sc0000007:189888..193652 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96871_cuf6 |
| Biotype | protein_coding |
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