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transcript:BL96869_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96869_cuf3
Unique Nametranscript:BL96869_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96869_cuf3

>transcript:BL96869_cuf3-protein ID=transcript:BL96869_cuf3-protein|Name=transcript:BL96869_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
IDFLDDNPSDDIACIAMGTDDLDENCQQGLSVPSFSYTIDHTQTSLPVLY
GGVDTPVVFNTTVRNDGGPPIPAGSQPNFHLQLYLAEQPALPSSPFADST
QINITYGNQATVLTNKIAPDGGHLTFTSLQAVVTI
Run BLAST on NCBI

mRNA from alignment at Sc0000007:180499..181922-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96869_cuf3 ID=transcript:BL96869_cuf3|Name=transcript:BL96869_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1424bp|location=Sequence derived from alignment at Sc0000007:180499..181922- (Branchiostoma lanceolatum)
ATATCGACTTCCTTGACGATAACCCATCCGATGACATTGCCTGTATCGCC ATGGGAACGGATGACCTTGATGAGAATTGCCAACAAGGTCAGAGAACAGA AATTACTCAAATTTTGGTCAAAAAGATAGATTCCACTAAAGTTTAAGTGA TTTGGTGTAATATAGCATATATTATAATTTAAAAACAATTCAAACTGTAC TACTTCTGGAAGTAAATCTCTGAATCTTTGGAAGTAGATCTGCAAATTTT ATCCAGTTTTAGAGTTTGAATTGTCTTTATATATTGTTTACCAGGATCCC TATCAATAATCATCATAAACAGCTCATAACTTTATATCTGTAGAATGAAA TTGTGGAAGTATTAATAAAAAGTGATGAAAAATAGGAATTTTGGAAAAAG ATATGGTAAATAGTCATATACTAACAGTCAAGGACAACATTTTCTTCAGA TTTTGTGCCTTTTTTGTTAAACAGATTTTTAAACAGATTAATTTTTCGTT GTCTGCCAAATTGTTACTTGCATATTGTCATTTTCTTTAATTAAGACAGG GCATCTGCTCATTATGAACTCTTGACTTTGACAGTTTTCTTTTGTGTTTT TTTTCCCATTCCAGGTTTGTCGGTGCCATCCTTCTCCTACACAATTGACC ACACCCAGACAAGTCTGCCGGTTCTGTATGGAGGAGTGGACACACCTGTT GTCTTCAACACAACCGTGCGCAACGATGGGGGACCGCCCATACCTGCCGG CAGCCAGCCTAACTTCCACCTGCAACTGTACCTGGCTGAACAACCGGCTC TTCCCAGCTCACCATTTGCAGGTTAGAGTACAGTTATTGTTGAATCTTTT TGCAATTATTTGTAAACTTATAATGTATGTAACGAAGGAGGGCCGCCCAT ACCTGCTAGCAGCCAGCCCAACTTCCTACTACAGCTGTACCTGGCTGAGA AACTGGCTCTGCCCAGCTCACCATTTGCAGGTAAGAGTGCCAGAATTATC AACCCAGGAGTGAAGCGTTCAAAAACTTTTTCCCAATAGAGCTATCGTAG AGTGGAACTCGTCGCCACCTTGAGTACAGTAGGGGCTACTCACAAGATGG CTTTAGGCAGCACACGTCTTGCAGTTAGATTTGCAAAGCTGGTTTGCTAC GACGAATGGCAGTTATACTGGCTGATATGTAGATACAGATACATGTTGAA ATGTTTAGAATTGCAATATAAGCTGATATGTAGATACAGATACAGATACA TGTTGAAATGTTTAGAATTGCAATATATGACCCTCTTATTTTTTTGTTAA TTGTTGCAGACTCCACACAGATCAACATCACCTATGGCAACCAGGCGACC GTCCTGACCAATAAGATTGCTCCGGATGGAGGTCATTTGACCTTCACGTC ACTCCAGGCTGTCGTCACGATCCC

Coding sequence (CDS) from alignment at Sc0000007:180499..181922-

>transcript:BL96869_cuf3 ID=transcript:BL96869_cuf3|Name=transcript:BL96869_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000007:180499..181922- (Branchiostoma lanceolatum)
ATCGACTTCCTTGACGATAACCCATCCGATGACATTGCCTGTATCGCCAT
GGGAACGGATGACCTTGATGAGAATTGCCAACAAGGTTTGTCGGTGCCAT
CCTTCTCCTACACAATTGACCACACCCAGACAAGTCTGCCGGTTCTGTAT
GGAGGAGTGGACACACCTGTTGTCTTCAACACAACCGTGCGCAACGATGG
GGGACCGCCCATACCTGCCGGCAGCCAGCCTAACTTCCACCTGCAACTGT
ACCTGGCTGAACAACCGGCTCTTCCCAGCTCACCATTTGCAGACTCCACA
CAGATCAACATCACCTATGGCAACCAGGCGACCGTCCTGACCAATAAGAT
TGCTCCGGATGGAGGTCATTTGACCTTCACGTCACTCCAGGCTGTCGTCA
CGATCATCGACTTCCTTGACGATAACCCATCCGATGACATTGCCTGTATC
GCCATGGGAACGGATGACCTTGATGAGAATTGCCAACAAGGTTTGTCGGT
GCCATCCTTCTCCTACACAATTGACCACACCCAGACAAGTCTGCCGGTTC
TGTATGGAGGAGTGGACACACCTGTTGTCTTCAACACAACCGTGCGCAAC
GATGGGGGACCGCCCATACCTGCCGGCAGCCAGCCTAACTTCCACCTGCA
ACTGTACCTGGCTGAACAACCGGCTCTTCCCAGCTCACCATTTGCAGACT
CCACACAGATCAACATCACCTATGGCAACCAGGCGACCGTCCTGACCAAT
AAGATTGCTCCGGATGGAGGTCATTTGACCTTCACGTCACTCCAGGCTGT
CGTCACGATCATCGACTTCCTTGACGATAACCCATCCGATGACATTGCCT
GTATCGCCATGGGAACGGATGACCTTGATGAGAATTGCCAACAAGGTTTG
TCGGTGCCATCCTTCTCCTACACAATTGACCACACCCAGACAAGTCTGCC
GGTTCTGTATGGAGGAGTGGACACACCTGTTGTCTTCAACACAACCGTGC
GCAACGATGGGGGACCGCCCATACCTGCCGGCAGCCAGCCTAACTTCCAC
CTGCAACTGTACCTGGCTGAACAACCGGCTCTTCCCAGCTCACCATTTGC
AGACTCCACACAGATCAACATCACCTATGGCAACCAGGCGACCGTCCTGA
CCAATAAGATTGCTCCGGATGGAGGTCATTTGACCTTCACGTCACTCCAG
GCTGTCGTCACGATC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96869gene:BL96869Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96869_cuf3transcript:BL96869_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96869_cuf3-E1BL96869_cuf3-E1-1564476830-73337Branchiostoma lanceolatumexon
BL96869_cuf3-E2BL96869_cuf3-E2-1564476830-73334Branchiostoma lanceolatumexon
BL96869_cuf3-E3BL96869_cuf3-E3-1564476830-73332Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000007genomeSc0000007:180499..181922 -
Properties
Property NameValue
Transcript idBL96869_cuf3
Biotypeprotein_coding