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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96860_cuf1 >transcript:BL96860_cuf1-protein ID=transcript:BL96860_cuf1-protein|Name=transcript:BL96860_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=441bp
LARDPSWVEYSSGTPWVSSGVTYDAEKVLDGDPMTYWKPRLDADWYNNGT
VWYIVLDFSASQSLTAIAINNYGDTGHDVAAFTLQKSRVGSPYNWEDVVS
VIDVQNGTDQRQEFGGFQGTARYWRFMITRTHWGYRPWLTELNLYGLGPC
PYGWYPAGYVCYRAFDELVSWQAASARCKREGGRLATAKDADTHNFLVAL
KNSIDPDEEFWIGLSDLDADETWVWADGTSIGQFTAWGGNQPNYHEGDQF
CVSYWLHNSVNMPDRWNDANCIRQKKFICERVNGGPENLTCRSEGKNAFS
LHWFHTFAHLSGYHIWYQDVLEEVKPPELVTSLTSGKRDVDVTIDGLKSS
TGYNVTVRAVVGTTVSLDDVTTIQCVTEMDTPQFIACSTATYSSLAISWT
RPEAPLFGYTANLTLAGDVPDHNRTVTTTTAGPQSEMLVFY Run BLAST on NCBI mRNA from alignment at Sc0000007:3813424..3816240+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96860_cuf1 ID=transcript:BL96860_cuf1|Name=transcript:BL96860_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2817bp|location=Sequence derived from alignment at Sc0000007:3813424..3816240+ (Branchiostoma lanceolatum)
CTGGCACGGGATCCGTCATGGGTTGAGTACTCCAGCGGCACACCGTGGGT
CAGTTCCGGAGTGACATATGATGCTGAAAAAGTCTTGGATGGAGACCCTA
TGACCTACTGGAAACCCCGTCTTGATGCCGACTGGTACAACAACGGCACA
GTCTGGTACATCGTACTGGACTTCTCAGCGTCTCAAAGTCTGACCGCCAT
CGCAATCAACAACTACGGAGACACCGGCCATGACGTTGCAGCCTTCACGT
TGCAAAAGTCGCGGGTTGGAAGTCCGTACAACTGGGAGGACGTCGTGTCC
GTTATTGATGTGCAGAACGGAACGGACCAGCGCCAGGAGTTCGGCGGGTT
CCAGGGAACAGCGCGGTACTGGAGGTTCATGATCACTCGGACCCACTGGG
GCTATCGGCCATGGCTCACAGAACTGAACCTATACGGATTAGGTAAGGGA
AAGTACCTCTTGTTATGTAATCTATGCAAATGTATATACGAGGAAGGTAC
CAAATGAATAGTTATGTGTGATGCATTGAAGTGTGAAACGTTGGTACGAG
GTAGAACGTTACGTAGTTTACAACCCACTTGCCGTGAATCTAGCAAAAAG
GGTACGTAGACGATATGTGCACATTTGACACGGGAATTATGCCAATATTA
CGCTGCCGGTCTTCTCGCTGCGTTAGCGTGCTTTGCGGCTAAAAACTCAA
TACAATACATTCCACAACTTCAGTTTTGATAAACGAATGATCAAGTTAAT
GTTAAAAATTCATTTTTCCCCCAATTGTTGACACGGAGATAATACCTTTA
TAACAGTGGTCTCGCGCGTTACCGTATCATGGACTATGATCTGAACAGAA
TTGCTCAGTTGGTACAGGTACAGTTGTCAACATTTTGACCATATGCCAAC
CATAGCCTTATACTTCCTCCTCCACCAGGACCGTGCCCCTATGGATGGTA
CCCGGCTGGTTACGTCTGCTACAGAGCGTTTGACGAGCTCGTCAGCTGGC
AAGCAGCTAGCGCCAGGTGCAAGCGAGAAGGCGGCCGGCTGGCAACCGCC
AAGGATGCCGACACGCACAACTTCCTCGTGGCGCTGAAAAACTCGATCGA
CCCCGACGAGGAATTCTGGATAGGCCTGAGCGACCTAGGTAGCAAAGAGC
ATTTTACATTTCATAACGAAGAGTATTGTAAAGTTTTGAGCTTTAATCCA
ACACAACAAAGGAACTAACCATGCATTTTCGGTCGGCACTTCAATCTTCT
TCAGATGTTTGATTCACTGCGCTGGATTTTTTGGACTAAAGCTAAAAACT
ACAATATGTACTCTACCAAGACAGATGAAATTCCACGCAAATAGCGAAGA
GTATTTGAATATATAACATACTGAGCATTACAGTTTCTTTGCTTGCATCT
TTGCCAGAGAAAGAGAGAAATGAAGTTGCTACACATTTTTTTGGCGACGC
CCCAGGGACGAATCTTTCTTTATTAACCTTTTTGCATATCTAGACGCGGA
TGAGACGTGGGTGTGGGCAGATGGAACGTCTATCGGACAGTTTACCGCGT
GGGGCGGAAACCAGCCAAACTACCACGAGGGCGACCAGTTTTGCGTCTCC
TACTGGCTTCACAACTCCGTGAATATGCCCGATCGTTGGAATGATGCCAA
CTGTATCCGCCAGAAGAAGTTTATTTGTGAGCGAGGTTAGTTAGTTAGTT
AGTTTGAACCTTTGTTTATTCATGAGAAGCTCAATTCGGCATGCGGCTAC
TTAGTTGATTTATTAATTTGTGCCTTCATTCTTACGTTCTTTCTGCAAGT
GCTTAAAGTCTGATAATTTGACATTTTGCTAATTCAACTTGTTTTCATCT
GGTTAAACATTTGCCGTCTCACTCGTTTTCAGTGAACGGAGGACCGGAGA
ATTTGACATGCCGTTCGGAAGGGAAGAACGCGTTTTCACTGCATTGGTTT
CATACTTTCGCGCATCTTTCGGGATACCATATTTGGTATCAGGACGTGTT
GGAGGAGGTTAAGCCACCGGAGCTGGTGACGTCATTAACATCGGGAAAAA
GGGACGTCGACGTCACCATTGACGGTTTAAAGAGCAGTACTGGATACAAC
GTCACGGTTCGCGCGGTCGTGGGCACAACCGTGAGTCTTGATGACGTCAC
CACAATCCAGTGCGTAACTGGTAAGCATTTATCGTTTGTTTGTACCCGTT
TAGAACCACTCATTCTGGATGTAGAATAGGATACTTCATCATAAAATCGA
TAATCAAAGCATTAGATCATGTACCACTGTATTTCATATTAGAGGGGTGA
AATTAACCAGCAAAGAAGGCATACCTATATTGCAACGCAGGGTCCTAAGA
GCCCCAACCGTGTCAAGCCTCGTTTTGGCGCATAACCCCGAGTTGACCCC
GGAAAATTCAAGATGGCCACGGTAACTGGAAACGGGTCTATTATATACAC
CTCTAAAGACCAATTCATAATAAGTGTGAAGAAACGAACAAACTGCTTCA
GCAGTAAAACCATGCGGAGTACTTGTCCTCTGGTGCTCTGTTCGTGCATG
TTTTGAAAGTTCTTCTTAGTGCTCCTTATCAAATCTTGCTCGTCGTTAAT
GTTGACTGATTATTTCGTGTTTCAGAAATGGACACCCCACAGTTCATCGC
CTGTTCAACAGCAACTTATTCGTCTCTCGCTATCAGTTGGACCAGGCCGG
AAGCGCCTCTTTTCGGATACACCGCAAATCTCACCCTTGCTGGCGACGTA
CCCGACCACAACAGAACAGTGACTACTACAACCGCTGGCCCCCAGAGCGA
AATGCTTGTTTTCTACG Coding sequence (CDS) from alignment at Sc0000007:3813424..3816240+ >transcript:BL96860_cuf1 ID=transcript:BL96860_cuf1|Name=transcript:BL96860_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=6615bp|location=Sequence derived from alignment at Sc0000007:3813424..3816240+ (Branchiostoma lanceolatum)
CTGGCACGGGATCCGTCATGGGTTGAGTACTCCAGCGGCACACCGTGGGT
CAGTTCCGGAGTGACATATGATGCTGAAAAAGTCTTGGATGGAGACCCTA
TGACCTACTGGAAACCCCGTCTTGATGCCGACTGGTACAACAACGGCACA
GTCTGGTACATCGTACTGGACTTCTCAGCGTCTCAAAGTCTGACCGCCAT
CGCAATCAACAACTACGGAGACACCGGCCATGACGTTGCAGCCTTCACGT
TGCAAAAGTCGCGGGTTGGAAGTCCGTACAACTGGGAGGACGTCGTGTCC
GTTATTGATGTGCAGAACGGAACGGACCAGCGCCAGGAGTTCGGCGGGTT
CCAGGGAACAGCGCGGTACTGGAGGTTCATGATCACTCGGACCCACTGGG
GCTATCGGCCATGGCTCACAGAACTGAACCTATACGGATTAGGACCGTGC
CCCTATGGATGGTACCCGGCTGGTTACGTCTGCTACAGAGCGTTTGACGA
GCTCGTCAGCTGGCAAGCAGCTAGCGCCAGGTGCAAGCGAGAAGGCGGCC
GGCTGGCAACCGCCAAGGATGCCGACACGCACAACTTCCTCGTGGCGCTG
AAAAACTCGATCGACCCCGACGAGGAATTCTGGATAGGCCTGAGCGACCT
AGACGCGGATGAGACGTGGGTGTGGGCAGATGGAACGTCTATCGGACAGT
TTACCGCGTGGGGCGGAAACCAGCCAAACTACCACGAGGGCGACCAGTTT
TGCGTCTCCTACTGGCTTCACAACTCCGTGAATATGCCCGATCGTTGGAA
TGATGCCAACTGTATCCGCCAGAAGAAGTTTATTTGTGAGCGAGTGAACG
GAGGACCGGAGAATTTGACATGCCGTTCGGAAGGGAAGAACGCGTTTTCA
CTGCATTGGTTTCATACTTTCGCGCATCTTTCGGGATACCATATTTGGTA
TCAGGACGTGTTGGAGGAGGTTAAGCCACCGGAGCTGGTGACGTCATTAA
CATCGGGAAAAAGGGACGTCGACGTCACCATTGACGGTTTAAAGAGCAGT
ACTGGATACAACGTCACGGTTCGCGCGGTCGTGGGCACAACCGTGAGTCT
TGATGACGTCACCACAATCCAGTGCGTAACTGAAATGGACACCCCACAGT
TCATCGCCTGTTCAACAGCAACTTATTCGTCTCTCGCTATCAGTTGGACC
AGGCCGGAAGCGCCTCTTTTCGGATACACCGCAAATCTCACCCTTGCTGG
CGACGTACCCGACCACAACAGAACAGTGACTACTACAACCGCTGGCCCCC
AGAGCGAAATGCTTGTTTTCTACCTGGCACGGGATCCGTCATGGGTTGAG
TACTCCAGCGGCACACCGTGGGTCAGTTCCGGAGTGACATATGATGCTGA
AAAAGTCTTGGATGGAGACCCTATGACCTACTGGAAACCCCGTCTTGATG
CCGACTGGTACAACAACGGCACAGTCTGGTACATCGTACTGGACTTCTCA
GCGTCTCAAAGTCTGACCGCCATCGCAATCAACAACTACGGAGACACCGG
CCATGACGTTGCAGCCTTCACGTTGCAAAAGTCGCGGGTTGGAAGTCCGT
ACAACTGGGAGGACGTCGTGTCCGTTATTGATGTGCAGAACGGAACGGAC
CAGCGCCAGGAGTTCGGCGGGTTCCAGGGAACAGCGCGGTACTGGAGGTT
CATGATCACTCGGACCCACTGGGGCTATCGGCCATGGCTCACAGAACTGA
ACCTATACGGATTAGGACCGTGCCCCTATGGATGGTACCCGGCTGGTTAC
GTCTGCTACAGAGCGTTTGACGAGCTCGTCAGCTGGCAAGCAGCTAGCGC
CAGGTGCAAGCGAGAAGGCGGCCGGCTGGCAACCGCCAAGGATGCCGACA
CGCACAACTTCCTCGTGGCGCTGAAAAACTCGATCGACCCCGACGAGGAA
TTCTGGATAGGCCTGAGCGACCTAGACGCGGATGAGACGTGGGTGTGGGC
AGATGGAACGTCTATCGGACAGTTTACCGCGTGGGGCGGAAACCAGCCAA
ACTACCACGAGGGCGACCAGTTTTGCGTCTCCTACTGGCTTCACAACTCC
GTGAATATGCCCGATCGTTGGAATGATGCCAACTGTATCCGCCAGAAGAA
GTTTATTTGTGAGCGAGTGAACGGAGGACCGGAGAATTTGACATGCCGTT
CGGAAGGGAAGAACGCGTTTTCACTGCATTGGTTTCATACTTTCGCGCAT
CTTTCGGGATACCATATTTGGTATCAGGACGTGTTGGAGGAGGTTAAGCC
ACCGGAGCTGGTGACGTCATTAACATCGGGAAAAAGGGACGTCGACGTCA
CCATTGACGGTTTAAAGAGCAGTACTGGATACAACGTCACGGTTCGCGCG
GTCGTGGGCACAACCGTGAGTCTTGATGACGTCACCACAATCCAGTGCGT
AACTGAAATGGACACCCCACAGTTCATCGCCTGTTCAACAGCAACTTATT
CGTCTCTCGCTATCAGTTGGACCAGGCCGGAAGCGCCTCTTTTCGGATAC
ACCGCAAATCTCACCCTTGCTGGCGACGTACCCGACCACAACAGAACAGT
GACTACTACAACCGCTGGCCCCCAGAGCGAAATGCTTGTTTTCTACCTGG
CACGGGATCCGTCATGGGTTGAGTACTCCAGCGGCACACCGTGGGTCAGT
TCCGGAGTGACATATGATGCTGAAAAAGTCTTGGATGGAGACCCTATGAC
CTACTGGAAACCCCGTCTTGATGCCGACTGGTACAACAACGGCACAGTCT
GGTACATCGTACTGGACTTCTCAGCGTCTCAAAGTCTGACCGCCATCGCA
ATCAACAACTACGGAGACACCGGCCATGACGTTGCAGCCTTCACGTTGCA
AAAGTCGCGGGTTGGAAGTCCGTACAACTGGGAGGACGTCGTGTCCGTTA
TTGATGTGCAGAACGGAACGGACCAGCGCCAGGAGTTCGGCGGGTTCCAG
GGAACAGCGCGGTACTGGAGGTTCATGATCACTCGGACCCACTGGGGCTA
TCGGCCATGGCTCACAGAACTGAACCTATACGGATTAGGACCGTGCCCCT
ATGGATGGTACCCGGCTGGTTACGTCTGCTACAGAGCGTTTGACGAGCTC
GTCAGCTGGCAAGCAGCTAGCGCCAGGTGCAAGCGAGAAGGCGGCCGGCT
GGCAACCGCCAAGGATGCCGACACGCACAACTTCCTCGTGGCGCTGAAAA
ACTCGATCGACCCCGACGAGGAATTCTGGATAGGCCTGAGCGACCTAGAC
GCGGATGAGACGTGGGTGTGGGCAGATGGAACGTCTATCGGACAGTTTAC
CGCGTGGGGCGGAAACCAGCCAAACTACCACGAGGGCGACCAGTTTTGCG
TCTCCTACTGGCTTCACAACTCCGTGAATATGCCCGATCGTTGGAATGAT
GCCAACTGTATCCGCCAGAAGAAGTTTATTTGTGAGCGAGTGAACGGAGG
ACCGGAGAATTTGACATGCCGTTCGGAAGGGAAGAACGCGTTTTCACTGC
ATTGGTTTCATACTTTCGCGCATCTTTCGGGATACCATATTTGGTATCAG
GACGTGTTGGAGGAGGTTAAGCCACCGGAGCTGGTGACGTCATTAACATC
GGGAAAAAGGGACGTCGACGTCACCATTGACGGTTTAAAGAGCAGTACTG
GATACAACGTCACGGTTCGCGCGGTCGTGGGCACAACCGTGAGTCTTGAT
GACGTCACCACAATCCAGTGCGTAACTGAAATGGACACCCCACAGTTCAT
CGCCTGTTCAACAGCAACTTATTCGTCTCTCGCTATCAGTTGGACCAGGC
CGGAAGCGCCTCTTTTCGGATACACCGCAAATCTCACCCTTGCTGGCGAC
GTACCCGACCACAACAGAACAGTGACTACTACAACCGCTGGCCCCCAGAG
CGAAATGCTTGTTTTCTACCTGGCACGGGATCCGTCATGGGTTGAGTACT
CCAGCGGCACACCGTGGGTCAGTTCCGGAGTGACATATGATGCTGAAAAA
GTCTTGGATGGAGACCCTATGACCTACTGGAAACCCCGTCTTGATGCCGA
CTGGTACAACAACGGCACAGTCTGGTACATCGTACTGGACTTCTCAGCGT
CTCAAAGTCTGACCGCCATCGCAATCAACAACTACGGAGACACCGGCCAT
GACGTTGCAGCCTTCACGTTGCAAAAGTCGCGGGTTGGAAGTCCGTACAA
CTGGGAGGACGTCGTGTCCGTTATTGATGTGCAGAACGGAACGGACCAGC
GCCAGGAGTTCGGCGGGTTCCAGGGAACAGCGCGGTACTGGAGGTTCATG
ATCACTCGGACCCACTGGGGCTATCGGCCATGGCTCACAGAACTGAACCT
ATACGGATTAGGACCGTGCCCCTATGGATGGTACCCGGCTGGTTACGTCT
GCTACAGAGCGTTTGACGAGCTCGTCAGCTGGCAAGCAGCTAGCGCCAGG
TGCAAGCGAGAAGGCGGCCGGCTGGCAACCGCCAAGGATGCCGACACGCA
CAACTTCCTCGTGGCGCTGAAAAACTCGATCGACCCCGACGAGGAATTCT
GGATAGGCCTGAGCGACCTAGACGCGGATGAGACGTGGGTGTGGGCAGAT
GGAACGTCTATCGGACAGTTTACCGCGTGGGGCGGAAACCAGCCAAACTA
CCACGAGGGCGACCAGTTTTGCGTCTCCTACTGGCTTCACAACTCCGTGA
ATATGCCCGATCGTTGGAATGATGCCAACTGTATCCGCCAGAAGAAGTTT
ATTTGTGAGCGAGTGAACGGAGGACCGGAGAATTTGACATGCCGTTCGGA
AGGGAAGAACGCGTTTTCACTGCATTGGTTTCATACTTTCGCGCATCTTT
CGGGATACCATATTTGGTATCAGGACGTGTTGGAGGAGGTTAAGCCACCG
GAGCTGGTGACGTCATTAACATCGGGAAAAAGGGACGTCGACGTCACCAT
TGACGGTTTAAAGAGCAGTACTGGATACAACGTCACGGTTCGCGCGGTCG
TGGGCACAACCGTGAGTCTTGATGACGTCACCACAATCCAGTGCGTAACT
GAAATGGACACCCCACAGTTCATCGCCTGTTCAACAGCAACTTATTCGTC
TCTCGCTATCAGTTGGACCAGGCCGGAAGCGCCTCTTTTCGGATACACCG
CAAATCTCACCCTTGCTGGCGACGTACCCGACCACAACAGAACAGTGACT
ACTACAACCGCTGGCCCCCAGAGCGAAATGCTTGTTTTCTACCTGGCACG
GGATCCGTCATGGGTTGAGTACTCCAGCGGCACACCGTGGGTCAGTTCCG
GAGTGACATATGATGCTGAAAAAGTCTTGGATGGAGACCCTATGACCTAC
TGGAAACCCCGTCTTGATGCCGACTGGTACAACAACGGCACAGTCTGGTA
CATCGTACTGGACTTCTCAGCGTCTCAAAGTCTGACCGCCATCGCAATCA
ACAACTACGGAGACACCGGCCATGACGTTGCAGCCTTCACGTTGCAAAAG
TCGCGGGTTGGAAGTCCGTACAACTGGGAGGACGTCGTGTCCGTTATTGA
TGTGCAGAACGGAACGGACCAGCGCCAGGAGTTCGGCGGGTTCCAGGGAA
CAGCGCGGTACTGGAGGTTCATGATCACTCGGACCCACTGGGGCTATCGG
CCATGGCTCACAGAACTGAACCTATACGGATTAGGACCGTGCCCCTATGG
ATGGTACCCGGCTGGTTACGTCTGCTACAGAGCGTTTGACGAGCTCGTCA
GCTGGCAAGCAGCTAGCGCCAGGTGCAAGCGAGAAGGCGGCCGGCTGGCA
ACCGCCAAGGATGCCGACACGCACAACTTCCTCGTGGCGCTGAAAAACTC
GATCGACCCCGACGAGGAATTCTGGATAGGCCTGAGCGACCTAGACGCGG
ATGAGACGTGGGTGTGGGCAGATGGAACGTCTATCGGACAGTTTACCGCG
TGGGGCGGAAACCAGCCAAACTACCACGAGGGCGACCAGTTTTGCGTCTC
CTACTGGCTTCACAACTCCGTGAATATGCCCGATCGTTGGAATGATGCCA
ACTGTATCCGCCAGAAGAAGTTTATTTGTGAGCGAGTGAACGGAGGACCG
GAGAATTTGACATGCCGTTCGGAAGGGAAGAACGCGTTTTCACTGCATTG
GTTTCATACTTTCGCGCATCTTTCGGGATACCATATTTGGTATCAGGACG
TGTTGGAGGAGGTTAAGCCACCGGAGCTGGTGACGTCATTAACATCGGGA
AAAAGGGACGTCGACGTCACCATTGACGGTTTAAAGAGCAGTACTGGATA
CAACGTCACGGTTCGCGCGGTCGTGGGCACAACCGTGAGTCTTGATGACG
TCACCACAATCCAGTGCGTAACTGAAATGGACACCCCACAGTTCATCGCC
TGTTCAACAGCAACTTATTCGTCTCTCGCTATCAGTTGGACCAGGCCGGA
AGCGCCTCTTTTCGGATACACCGCAAATCTCACCCTTGCTGGCGACGTAC
CCGACCACAACAGAACAGTGACTACTACAACCGCTGGCCCCCAGAGCGAA
ATGCTTGTTTTCTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000007 | genome | Sc0000007:3813424..3816240 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96860_cuf1 |
| Biotype | protein_coding |
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