transcript:BL96845_cuf13 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96845_cuf13
Unique Nametranscript:BL96845_cuf13
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96845_cuf13

>transcript:BL96845_cuf13-protein ID=transcript:BL96845_cuf13-protein|Name=transcript:BL96845_cuf13|organism=Branchiostoma lanceolatum|type=polypeptide|length=276bp
TAECKKKVYGCSFRCEETCHCYRFKITECMYGDRSTCVPTCGECPPCPKG
YIRKDRDHCVKPTQCDCITADGVIVPAGKVTKVGECMVCKCENNNMKCEN
ICTTTTSRTTTTQEQTTRPETYTTKPEKYTTKPETWTTKPETYTTGPETY
TTRPETYTTKPETYTTRPETYTTGPETYTTKPEVYTTRPEIYTTEPETYT
TVQTTTYKTPRKVTTPSSTTTPGTYTTRPETYTTKPEVYTTKPEVYTTKP
EVYTTKPEVYTTKPEVYTTKPEVYTT
Run BLAST on NCBI

mRNA from alignment at Sc0000146:625816..626913-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96845_cuf13 ID=transcript:BL96845_cuf13|Name=transcript:BL96845_cuf13|organism=Branchiostoma lanceolatum|type=mRNA|length=1098bp|location=Sequence derived from alignment at Sc0000146:625816..626913- (Branchiostoma lanceolatum)
ATACAGCTGAGTGTAAGAAGAAGGTGTATGGCTGCTCTTTCCGTTGTGAG GAGACCTGCCACTGCTACAGGTTCAAGATCACAGAGTGTATGTATGGTGA CAGAAGTACCTGTGTGCCTACATGTGGTGAATGTCCACCATGTCCCAAGG GATACATCAGGAAGGACCGTGACCACTGTGTCAAACCAACTCAGTGTGAC TGCATCACTGCAGATGGTGTTATTGTACCAGTAAGTATAAAATGTTTTTA TAACAGTGATATTAGCAATTTAGTTAATAGAAGGGGAGAGAGAGTAATGT AGGATACCATATTTTAATGTTAGTCTTAAAAAGATTATTCAAGATTATTC ATAATTGGATTGAAAACTAATGATGTTTGTCATGTTCTTTCTGTTAAATC TGTATCAAACCTAAAACTACTTGTAATAGAATTTTTTTTTAAAGAGTGGC CAATAGTCAGACTTTATCAAGTCAAATATCCCATTTTGACAATTCCAGGC AGGAAAAGTGACAAAGGTTGGAGAATGCATGGTATGCAAGTGCGAGAACA ACAACATGAAGTGTGAAAATATCTGTACAACCACAACCTCAAGGACAACA ACAACACAGGAGCAGACAACACGCCCTGAGACTTATACAACTAAGCCTGA GAAATACACCACCAAGCCTGAGACATGGACAACAAAGCCTGAGACCTACA CCACTGGGCCTGAGACATACACCACCAGGCCTGAGACATACACCACCAAG CCTGAGACATACACCACCAGGCCTGAGACCTACACCACTGGGCCTGAGAC ATACACCACCAAGCCAGAGGTGTACACCACTAGACCTGAAATCTACACCA CTGAACCAGAAACTTATACGACAGTGCAGACAACAACATACAAAACACCA AGGAAGGTGACAACTCCCTCTTCTACAACAACTCCAGGGACCTACACCAC TAGGCCTGAGACCTACACCACCAAGCCAGAGGTCTACACCACCAAGCCAG AGGTCTACACCACCAAGCCAGAGGTCTACACCACCAAGCCAGAGGTCTAC ACCACCAAGCCAGAGGTCTACACCACCAAGCCAGAGGTATACACCACC

Coding sequence (CDS) from alignment at Sc0000146:625816..626913-

>transcript:BL96845_cuf13 ID=transcript:BL96845_cuf13|Name=transcript:BL96845_cuf13|organism=Branchiostoma lanceolatum|type=CDS|length=1656bp|location=Sequence derived from alignment at Sc0000146:625816..626913- (Branchiostoma lanceolatum)
ACAGCTGAGTGTAAGAAGAAGGTGTATGGCTGCTCTTTCCGTTGTGAGGA
GACCTGCCACTGCTACAGGTTCAAGATCACAGAGTGTATGTATGGTGACA
GAAGTACCTGTGTGCCTACATGTGGTGAATGTCCACCATGTCCCAAGGGA
TACATCAGGAAGGACCGTGACCACTGTGTCAAACCAACTCAGTGTGACTG
CATCACTGCAGATGGTGTTATTGTACCAGCAGGAAAAGTGACAAAGGTTG
GAGAATGCATGGTATGCAAGTGCGAGAACAACAACATGAAGTGTGAAAAT
ATCTGTACAACCACAACCTCAAGGACAACAACAACACAGGAGCAGACAAC
ACGCCCTGAGACTTATACAACTAAGCCTGAGAAATACACCACCAAGCCTG
AGACATGGACAACAAAGCCTGAGACCTACACCACTGGGCCTGAGACATAC
ACCACCAGGCCTGAGACATACACCACCAAGCCTGAGACATACACCACCAG
GCCTGAGACCTACACCACTGGGCCTGAGACATACACCACCAAGCCAGAGG
TGTACACCACTAGACCTGAAATCTACACCACTGAACCAGAAACTTATACG
ACAGTGCAGACAACAACATACAAAACACCAAGGAAGGTGACAACTCCCTC
TTCTACAACAACTCCAGGGACCTACACCACTAGGCCTGAGACCTACACCA
CCAAGCCAGAGGTCTACACCACCAAGCCAGAGGTCTACACCACCAAGCCA
GAGGTCTACACCACCAAGCCAGAGGTCTACACCACCAAGCCAGAGGTCTA
CACCACCAAGCCAGAGGTATACACCACCACAGCTGAGTGTAAGAAGAAGG
TGTATGGCTGCTCTTTCCGTTGTGAGGAGACCTGCCACTGCTACAGGTTC
AAGATCACAGAGTGTATGTATGGTGACAGAAGTACCTGTGTGCCTACATG
TGGTGAATGTCCACCATGTCCCAAGGGATACATCAGGAAGGACCGTGACC
ACTGTGTCAAACCAACTCAGTGTGACTGCATCACTGCAGATGGTGTTATT
GTACCAGCAGGAAAAGTGACAAAGGTTGGAGAATGCATGGTATGCAAGTG
CGAGAACAACAACATGAAGTGTGAAAATATCTGTACAACCACAACCTCAA
GGACAACAACAACACAGGAGCAGACAACACGCCCTGAGACTTATACAACT
AAGCCTGAGAAATACACCACCAAGCCTGAGACATGGACAACAAAGCCTGA
GACCTACACCACTGGGCCTGAGACATACACCACCAGGCCTGAGACATACA
CCACCAAGCCTGAGACATACACCACCAGGCCTGAGACCTACACCACTGGG
CCTGAGACATACACCACCAAGCCAGAGGTGTACACCACTAGACCTGAAAT
CTACACCACTGAACCAGAAACTTATACGACAGTGCAGACAACAACATACA
AAACACCAAGGAAGGTGACAACTCCCTCTTCTACAACAACTCCAGGGACC
TACACCACTAGGCCTGAGACCTACACCACCAAGCCAGAGGTCTACACCAC
CAAGCCAGAGGTCTACACCACCAAGCCAGAGGTCTACACCACCAAGCCAG
AGGTCTACACCACCAAGCCAGAGGTCTACACCACCAAGCCAGAGGTATAC
ACCACC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96845gene:BL96845Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96845_cuf13-E1BL96845_cuf13-E1-1564476830-345942Branchiostoma lanceolatumexon
BL96845_cuf13-E2BL96845_cuf13-E2-1564476830-345939Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96845_cuf13transcript:BL96845_cuf13-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000146genomeSc0000146:625816..626913 -
Properties
Property NameValue
Transcript idBL96845_cuf13
Biotypeprotein_coding