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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96835_cuf5 >transcript:BL96835_cuf5-protein ID=transcript:BL96835_cuf5-protein|Name=transcript:BL96835_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=230bp
DETSANLVAHDVPVPSTFSCTGKQPGLYVDPADCSMYYECVLGHPVYHRP
CAPGGTVYDPASLRCMWPHEVSGPCGMNANVRPTVVQFCFTVTMCTFSFL
ARYHNHDLKISPNRIISLMNVSTACDGRNFSKPCSPRCPRPLYVLLYGEA
AGHVRRPCRLLHVLRVCAGPPRVPPALRPGGNRVRPRQPQVHVAPRSVRS
LRDKCKRKTFFRAILFHIYNVYFFISSSLS Run BLAST on NCBI mRNA from alignment at Sc0000029:820268..828777- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96835_cuf5 ID=transcript:BL96835_cuf5|Name=transcript:BL96835_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=8510bp|location=Sequence derived from alignment at Sc0000029:820268..828777- (Branchiostoma lanceolatum)
CGGACGAAACTTCAGCAAACCTTGTAGCCCACGATGTCCCCGTCCCCTCC
ACGTTCTCCTGTACGGGGAAGCAGCCGGGCCTGTACGTCGACCCCGCCGA
CTGCTCAATGTACTACGAGTGTGTGCTGGGCCACCCCGTGTACCACCGGC
CCTGCGCCCCGGGGGGAACCGTGTACGACCCCGCCAGCCTCAGGTGCATG
TGGCCCCACGAAGTGTCCGGTCCTTGCGGGATGAATGCAAACGTAAGACC
TACAGTCGTGCAATTTTGTTTCACAGTTACAATGTGTACTTTCTCATTTC
TAGCTCGTTATCATAATCACGATTTGAAAATTTCTCCTAATAGAATTATA
TCCCTCATGAATGTATCCACAGCTTGTGACGGACGAAACTTCAGCAAACC
TTGTAGCCCACGATGTCCCCGTCCCCTCTACGTTCTCCTGTACGGGGAAG
CAGCCGGGCATGTACGCCGACCCTGCCGACTGCTCCATGTACTACGAGTG
TGTGCTGGGCCACCCCGTGTACCACCGGCCCTGCGCCCCGGGGGGAACCG
TGTACGACCCCGCCAGCCTCAGGTGCATGTGGCCCCACGAAGTGTCCGGT
CCTTGCGGGACAAGTGCAAACGTAAGACCTTCTTTCGTGCAATTTTGTTT
CACATTTACAATGTCTACTTTTTCATTTCTAGCTCGTTATCATAATTATG
ATTTTGAGTATTCCCCACAATAAGATTATATCTCTTATGTGTATCCACAG
CTTGTGACGGACGAAACTTCAGCAAACCTTGTAGCCCACGATGTCCCCTC
CACGTTCTCCTGTTCGGGGAAGCAGCCGGGCATGTACGCCGACCCTGCCG
ACTGCTCCATGTACTACGAGTGTGTGCTGGGCCACCCCGTGTACCACCGG
CCCTGCGCCCCGGGGGGAACCGTGTACGACCCCGCCAGGCAGGAGTGTAG
GTGGCCCCATGAAGTGTCCGGTCCTTGCCGAGCTTATGTAAGTAGCACCA
TTAGTGTTTTCAACGTTGATTATTACTATTGTCTAGAAATTCTAGATGTA
TTGTAAGATTGCCTTTCGAGATGAATCTAACGTCTTCAAGTATGTGAACA
CTCGAATATATGGCTAAACTTTTCACCCAATTCTCAAAATGGAGGACTTT
ATTTTGATAAGAAGATCTAGTAGTGACTAAGTATGTCTTCTCTATCTCAC
ACAGACCCTTCCAGCCAGCCGGACCGAACCCTTCTCGTGTGCGGGGAAGG
CGCCCGGTCACTACCCCGACCCTGCCAGCTGCAGCCGGTACTACCAGTGT
ACCCTGCTCAGCAGCGCGCCGTTCCACCGGGACTGTCCGCCGGGCGGCCT
GGTGTTTGACGCCGGGAGACAGTACTGCACCTGGCCGTGGAGCGTGGCTG
GTCCGTGCGGGGTAAGAACAGTATAGTTGCCATATTTAGATTGTTAGATT
GATTTTAGACATTTCAGAAACGCCATTTGATCGATGTTTATTGTTTTCAT
GTTCTAAATATTTGCTTGTTTAATTACGCTAAATGACAGTTACTCGAGCA
ACTGGATAAAATTTTGAAATTAGACGTTTCAGACAGAATACGCTGCCTTT
CGTTAGTGCTTAAAGGGAAGATCTGAAGAACCAGGTTTTATACCAAAATT
CTGAATGGATATGTTAACGAAGTGAAAACAATTTTAAGATGGTTCACCAG
AACACGAAGTGAAGACAAATACCTTCATTGATGTGTTTGCTTATGTATTT
GTTTGTTTTGTTTTCATTAAGAATTACGGACAGTGAGTGAAACATACACC
GAGTTTCAACACCTGACGACAACTCTCAGCTGGTCTGAGGCCTACGTCCT
ACGAAGCAGTGGATAAGATAGTTTGTCTAAATTCTTAAGAGCTGAAATCT
TGCCTTTTGTATATTTCAGTCGTCTTTTATATACCGTGATACTCTGATTT
GATATTTTCGAGATAAGTGTGTAATTGTCTGGTTCCTATAAGTATTCCTC
AGTCGTCTATACTGTACAGTATTTATAGTATGAAGAAATAAAAACTAAGA
AATGCAAATCATCAAGTTTGTGACTCTTTCCTAAATCTGATTATGAGGAG
CATGTGTGATAAGTCAGTTATAAAGGTAAATAACATCACTTGGCGAAGGT
ATGTGGTCGTGGAACTCTAATTGTTTCTTGTTCAGTTCCTTCGTGTTTTT
TTTGTAATGAAAGAAACACTCTGACGGGGTTTTGCGAAATTCAAACCGCT
AACGAACTTAACCTTCTGTTTTGACCCCTTCTATTTGACCCCGTCATTAT
TTCGATCGCCCTCTGGATACTTCATGTCAACACAAAATCTAAAGCCAGCT
CTTTAAAAGGTTGATATTCATGATTAAACGGAAATCTGATAAAACGTCGA
AGATCCTATCACCAATATGTTGATGCAGATTTTCAAATATCTTAAGCCTT
TTTGAGAAGATGACATTCTTTTGTTGAAAACATAACGATTTTAACCTAGC
CGAAGCCTGCGGCTATGTGACGCCTTTAGCCCTGATCTCACTGGACCCGC
GGCATGTTGACGCCCTAGCTCGCTGCGTCTTAAATGGAATTTGTGCTACC
CTTGACTTATAATGGGGATATCATGCAAAACGTGCAAGTCTAACTAAAGC
ACAACAAATCACACAAAGCGTAAAAAGATTCTAACCTTCGTCAACGTAAA
AAGATTCGTTTTTATCAATCAATCAATCAATCGACCAATCAATCGACCAA
TCAATCAACCAACCAATCAATCAACCAACCAACCAACNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGCGGTTCTAGAGCGACAGATCGCCGAGACCAAAGAGGA
AACGGGCCGCTTAAAAGATGAAGTCGATCGCCTCAAGTCGATGGTAGAAA
CTCTGCTGTCTAGGGTGGACAGTTTGTCTGAAGTAATTTTGAACTTGTCT
GTCTTTGTTTGTATTTGTGTCTGTTTATGCGTGATCCTAGACTAAGGGAG
CCAATTCAACGTTACATATCTATATTCTACGAAGGCATTTCTTTGCTTAT
TTTCATGCGTTTTGATTTAAGACTTTATGACCTCTGGTATCCATGAAAAT
ACTTAATCTTACGTAATCTGTAATGCTTAAAAGTAATGTTCTCTACAGTA
TGGGATTTGTTTGTTACAAGCTTACCTAGAACTAAAAAGGCAACATTTGC
AAGCTAACGCAGCATATTTCATTCCCTCTTCTTCACCATAAAAAAATGGA
CTGTTTCAAAACAATCTTCATTCGCATAAATGGACCAACCCAGGGGTCCA
TTATGGACCCCTGGTCGCTTCCTGTGGTACTGCAGAAGAACATTATTGAT
ATCTCGTGTTCAGTCGTAAACATTAACATCATTTGGCTAAGGTATGAGGT
CGCGGAACTCTAGTTATCATGATTTTCCTCCGAATCTAATCATATCCCTC
CTGTACGTGCAGAATTTACAACCTGTGACTGACGAAACTCCAACAAGCTC
CACCTTCTCCTGTGCGGGGAAGCAGCCGGGCCTGTACGCCGATCCTGCCG
ACTGCTCCATGTACTACGAGTGTGTGCTGGGCCACCCCGTGTACCACCGG
CCCTGCGCCCCGGGGGGAACCGTGTACGACCCCGCCAGCCTCAGGTGCAT
GTGGCCCCACGAAGTGTCCGGTCCTTGCGGGACAAGTGCAAACGTAAGAC
CTTCTTTCGTGCAATTTTGTTTCACATTTACAATGTCTANAGTGAAAACG
TAAGACCTTCAGTCGTGTGATTTTTTTCACATTTACAATGTCTATACTTT
CGCATTTCTAGCTCGTTATCATAATCATGATTCGAATATTCACAACAAAA
TCAATATAATCATATCCCTTATGAATGTATCCACAGCTTGTGACGGACGA
AACCTCAGCAAACCTTGTAGACCACGATGTCCCCGTCCCCTCTACGTTCA
TCTGTACGGGGAAGCAGCCGGGCCTGTACGCCGACCCTGCCGACTGCTCC
ATGTACTACGAGTGTGTGCTGGGCCACCCCGTGTACCACCGGCCCTGCGC
CCCGGGGGGAACCGTGTACGACCCCGCCAGCCTCAGGTGCATGTGGCCCC
ACGAAGTGTCCGGTCCTTGCGGGACAAGTGCAAACGTAAGACCTTCTGTC
GTATAATTTCTTTCATGTTTACAACGTCTACTTTCTCATTTCTAGTTCGT
TATCATAATTACGATTTGAATATTCCTCCCAATAAAATCATATCCCTTAT
ATATGTATCCACAGCTTGTGACGGACGAAACTTCAGCAAACCTTGTAGCC
CACGATGTCCCCGTCCCCTCCACGTTCTCCTGTACGGGGAAGCAGCCGGG
CATGTACGCCGACCCTGCCGACTGCTCCATGTACTACGAGTGTGTGCTGG
GCCACCCCGTGTACCACCGGCCCTGCGCCCCGGGGGGAACCGTGTACGAC
CCCGCCAGCCTCAGGTGCATGTGGCCCCACGAAGTGTCCGGTTCTTGCGG
GACAAGTGCAAACGTAAGACCTTCTGTCGTGCAATTTCTTTCACATTTAC
GATGTCTACTTTCTCATTGATAGCTCGTTATCATAATTACGATTTGAATA
TTCTTCCCAATAAAATTATATCCCTTATATATGTATCCACAGCTTGTGAC
TGACGAAACTTCAGCAAACCTTGTAGCCCACGATGTCCCCGTCCCCTCTA
CGTTCTCCTGTACGGGGAAGCAGCCGGGCATGTACGCCGACCCTGCCGAC
TGCTCCATGTACTACGAGTGTGTGCTGGGCCACCCCGTGTACCACCGGCC
CTGCGCCCCGGGGGGAACCGTGTACGACCCCGCCAGCCTCAGGTGCATGT
GGCCCCACGAAGTGTCCGGTCCTTGCGGGACAAGTGCAAACGTAAGACCT
TCTTTCGTGCAATTTTGTTTCACATTTACAATGTCTACTTTTTCATTTCT
AGCTCGTTATCATAATTATGATTTTGAGTATTCCCCACAATAAGATTATA
TCTCTTATGTGTATCCCCAGCTTGTGACGGACGAAACTTCAGCAAACCTT
GTAGCCCACGATGTCCCCTCCACGTTCTCCTGTACGGGGAAGCAGCCGGG
CATGTACGCCGACCCTGCCGACTGCTCCATGTACTACGAGTGTGTGCTGG
GCCACCCCGTGTACCACCGGCCCTGCGCCCCGGGGGGAACCGTGTACGAC
CCCGCCAGGCAGGAGTGTAGGTGGCCCTATGAAGTGTCCGGTCCTTGCCG
AGCTTATGTAAGTAGCACCATTAGTGTTTTCAACGTTGATTATTACTATT
GTCTAGAAATTCTAGATGTATTGTAAGATTGCCTTTCGAGATGAATCTAA
CGTCTTCAAGTATGTGAACACTCGAATATATGGCTAAACTTTTCACCCAA
TTCTCAAAATGGAGGACTTTATTTTGATAAGAAGATCTAGTAGTGACTAA
GTATGTCTTCTCTATCTCACACAGACCCTTCCAGCCAGCCGGACCGAACC
CTTCTCGTGTGCGGGGAAGGCGCCCGGTCACTACCCCGACCCTGCCAGCT
GCAGCCGGTACTACCAGTGTACCCTGCTCAGCAGCACGCCGTTCCACCGG
GACTGTCCGCCGGGCGGCCTGGTGTTTGACGCCGGGAGACAGTACTGCAC
CTGGCCGTGGAGCGTGGCTGGTCCGTGCGGGGTAAGAACAGTATAGTTGC
CATATTTAGATTGTTAGATTGATTTTAGACATTTCAGAAACGCCATTTGA
TCGATGTTTATTGCTTTTATGTTCTAAATATTTGCTTGTTTAATTAATTA
CGCTAAATGACAGTTACTCAAGCAACTGGATAACATGTTGAAAGTCAGAC
GTTTCAGACAGCATCCGCTGCCTTTCGTTAGTGCCTAAAGGGAAGATCTG
AAGAACCAGGTTTTATACCAAAATTCTGAATGGATATGTTTAACGAGGTG
AAAACAATTTTAAGATTGTTCACGAAGTAATGACAAATACCTTCATTGAT
GTGTTTGTTTATTTATTTGTTTGTTTTGTTTTCATTAAGAATTACGGACA
GTGAGTGAAACATACACCGAGTTTCAACACCTGACGACAACTCTCAGCTG
GTCTGAGGCCTACGTCCTACGAAGCAGTGGATAAGATAGTTTGTCTAAAT
TCTTAAGAGCTGAAATCTTGCCTTTTGTATATTTCAGTCGTCTTTTATAT
ACCGTGATACTCTGATTTGATATTTTCGAGATAAGTGTGTAATTGTCTGG
TTCCTATAAGTATTCCTCAGTCGTCTATACTGTACAGTATTTATAGTATG
AAGAAATAAAAACTAAGAAATGCAAATCATCAAGTTTGTGACTCTTTCCT
AAATCTGATTATGAGGAGCATGTGTGGTAAGTCAGTTATAAAGGTAAATA
ACATCACTTGGCGAAGGTATGTGGTCGTGGAACTCTAATTGTTTCTTGTT
CAGTTCCTTCGTTTTTTTTGTAATGAAAGAAACACTCTGACGGGGTTTTG
CGAAATTCAAACCGCTAACGAACTTAACCTTCTGTTTTGACCCCTTCTAT
TTGACCCCGTCATTATTTCGATCGCCCTCTGGATACTTCATGTCAACACA
AAATCTAAAGCCAGCTCTTTAAAAGGTTGATATTCATGATTAAACGGAAA
TCTGATAAAACGTCGAAGATCCTATCACCAATATGTTGATGCAGATTTTC
AAATATCTTAAGCCTTTTTGAGAAGATGACATTCTTTTGTTGAAAACATA
ACGATTTTAACCTAGCCGAAGCCTGCGGCTATGTGACGCCTTTAGCCCTG
ATCTCACTGGACCCGCGGCATGTTGACGCCCTAGCTCGCTGCGTCTTAAA
TGGAATTTGTGCTACCCTTGACTTATAATGGGGATATCATGCAAAACGTG
CAAGTCTAACTAAAGCACAACAAATCACACAAAGCGTAAAAAGATTCTAA
CCTTCGTCAACGTAAAAAGATTCGTTTTTATCAATCAATCAATCAATCAA
CCAATCAATCGACCAATCAATCAACCAACCAATCAATCAACCAACCAACC
AACNTTGTCTGAAGTAATTTTGAACTTGTCTGTCTTTGTTTGTATTTGTG
TCTGTTTATGCGTGATCCTAGACTAAGGGAGCCAATTCAACGTTACATAT
CTATATTCTACGAAGGCATTTCTTTGCTTATTTTCATGCGTTTTGATTTA
AGACTTTATGACCTCTGGTATCCATGAAAATACTTAATCTTACGTAATCT
GTAATGCTTAAAAGTAATGTTCTCTACAGTATGGGATTTGTTTGTTACAA
GCTTACCTAGAACTAAAAAGGCAACATTTGCAAGCTAACGCAGCATATTT
CATTCCCTCTTCTTCACCATAAAAAAATGGACTGTTTCAAAACAATCTTC
ATTCGCATAAATGGACCAACCCAGGGGTCCATTATGGACCCCTGGTCGCT
TCCTGTGGTACTGCAGAAGAACATTATTGATATCTCGTGTTCAGTCGTAA
AGATTAACATCATTTGGCTAAGGTATGAGGTCGCGGAACTCCAGTTATCA
TGATTTTCCTCCGAATCTAATCAACAAGCTCCACCTTCTCCTGTGCGGGG
AAGCAGCCGGGCCTGTACGCCGATCCCGCCGACTGCTCCATGTACTACGA
GTGTGTGCTGGGCCACCCCGTGTACCACCGGCCCTGCGCCCCGGGCGGCC
TGGTGTTTGACGCCGACAGACAGATCTGCAACTGGCCGTGGAACGTGTCC
GGTCCTTGTAGGGGAAGAACAGTATTGTAGCCCTATCTTGATTTTTTAAA
AGTTGGCAACGAGATGTATTAAAACTAGAATCGCAACTAAAAACTCCAAA
CGCTACTGGAGCAAAATCTTTTGAATTTATGTTCTAATTATTTGTTTTGC
TCTCATTCAATCAATGGAAAGTGAGGGAAACAAAAATTACCCGAGTTTTG
ACACCCGGCGACTCATCTCAGGATGTCTGAAACCTAGGTCCTACGAAGAA
GTGGACAGAAGCTCTAATTATAAAGAGCTCAAATGTTGCGTTGTTATGTT
TATAAATTATTTGTCCTTTATATAAATATATATACTTTCATACCGTGATT
TTACATTTTGGGCCGGGATACGTGTGCAATATGCGTTTGGGGACATTTAG
TTCCATTTCGTCGTTCTTACAGTACTTTTTGTACAAAGACATAATAAAGA
CTGAAAAGTA Coding sequence (CDS) from alignment at Sc0000029:820268..828777- >transcript:BL96835_cuf5 ID=transcript:BL96835_cuf5|Name=transcript:BL96835_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=693bp|location=Sequence derived from alignment at Sc0000029:820268..828777- (Branchiostoma lanceolatum)
GACGAAACTTCAGCAAACCTTGTAGCCCACGATGTCCCCGTCCCCTCCAC
GTTCTCCTGTACGGGGAAGCAGCCGGGCCTGTACGTCGACCCCGCCGACT
GCTCAATGTACTACGAGTGTGTGCTGGGCCACCCCGTGTACCACCGGCCC
TGCGCCCCGGGGGGAACCGTGTACGACCCCGCCAGCCTCAGGTGCATGTG
GCCCCACGAAGTGTCCGGTCCTTGCGGGATGAATGCAAACGTAAGACCTA
CAGTCGTGCAATTTTGTTTCACAGTTACAATGTGTACTTTCTCATTTCTA
GCTCGTTATCATAATCACGATTTGAAAATTTCTCCTAATAGAATTATATC
CCTCATGAATGTATCCACAGCTTGTGACGGACGAAACTTCAGCAAACCTT
GTAGCCCACGATGTCCCCGTCCCCTCTACGTTCTCCTGTACGGGGAAGCA
GCCGGGCATGTACGCCGACCCTGCCGACTGCTCCATGTACTACGAGTGTG
TGCTGGGCCACCCCGTGTACCACCGGCCCTGCGCCCCGGGGGGAACCGTG
TACGACCCCGCCAGCCTCAGGTGCATGTGGCCCCACGAAGTGTCCGGTCC
TTGCGGGACAAGTGCAAACGTAAGACCTTCTTTCGTGCAATTTTGTTTCA
CATTTACAATGTCTACTTTTTCATTTCTAGCTCGTTATCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000029 | genome | Sc0000029:820268..828777 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96835_cuf5 |
| Biotype | protein_coding |
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