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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96829_cuf0 >transcript:BL96829_cuf0-protein ID=transcript:BL96829_cuf0-protein|Name=transcript:BL96829_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
MAVLFYLVAALFAAKEATTQSPDPCDSQQHTVLNEPLRSVGHIYQANQAP
ICDRNLVYGWYRFDSPAGNEIPLTCPPANRCGTHTTVWLNLTSSPSANDG
VVLTNGCAHFVAPGVTDDCCAWRTNVAVKNCSDYLVYAL Run BLAST on NCBI mRNA from alignment at Sc0000029:2066307..2072101+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96829_cuf0 ID=transcript:BL96829_cuf0|Name=transcript:BL96829_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5795bp|location=Sequence derived from alignment at Sc0000029:2066307..2072101+ (Branchiostoma lanceolatum)
GGAAACTGCACATAGAAAATGGCTGTTCTTTTTTACCTGGTGGCTGCGCT
GTTTGCTGCAAAAGGTAAGCCTTGTATGACCCAATGAATGATATTGCCCG
AGAGTACGTAAGTCACGATAATATTATATGGTTGTCAAGATACCTAGAAT
AAGATCCTTCGTAACTTGCAATCCGTATAACCAAAATGTAAACGAGCAAG
GAAAATACTACAGAATATTTTTGATCATCATTTGCATTACCGATTTCTTT
TTCTAGATACGTATGGTTAGTTTTTTACTTAGGTAACTTGGAAAATTTAA
TACACACTCAGTATTGTTCATTAAACCAACTTGCAACTCTAAGCAAATAC
GCCTTTATCCTTCACTACAGAAGCTACAACTCAAAGTCCAGATCCGTGCG
ACTCGCAGCAGCATACAGTACTGAACGAACCCCTCCGAAGTGTTGGTCAC
ATCTACCAGGCCAACCAAGCTCCGATTTGTGACCGTAATCTTGTCTACGG
CTGGTACAGATTCGACAGTCCTGCAGGTAAGCATATGATGAGAATATTAC
ATTCTGAACAATGAAAATAACACGCATGAAGCACACGCGCGCACACGCGC
GCACACACAAACGAGGAAATGCACACACATGAACTTACTTAGGGAATTAT
GTAATATCTATTTAATTTTGCCTTCGGTGATTTGATTCAACATTTGTATC
ATTAGCTTCCATTACACAATTAGAAATAGAACATAACAACGAGTTTAATG
AACTAGATGTTCTACCCAGGCGATGAGATCCCCTAAAATATATTGGAATG
ACATTGTAAGAAGTTCTACTAGGCTTGAGAGTAAAATGATTGTTGACTAA
TTTCTTTCCAGGCAATGAGATCCCCCTGACATGTCCCCCTGCCAACCGAT
GCGGCACACACACCACAGTCTGGCTGAACCTGACGTCCAACCCTTCAGCT
AACGACGGAGTGGTCTTAACGAACGGCTGCGCCCATTTTATTGCACCCGG
TGTGACTGACGACTGCTGTGCCTGGAGAACTAACGTGGCCGTCAAAAACT
GCAGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACACACTGGGACACACCCGGCACCAGTGTGCT
TACGCCTTCTGTGCCGGTGAGTTGAATGGATTGAAATGGTACTGTTTTTA
TATGTGACTACCTGGTGTACGCACTGGGACACACCCGGCACCAGTGTGCT
AACGCCTTCTGTGCCGGTGAGTTCTATCAGCTAAAATGATACTTTTGACT
GCTTAACAAAGCAAAGTCCAGACACCATTTTAAGGAAACATGGGACCATA
TTGTTCGCAATTGATATCATAATAATCTAAACATTCTTGCATATGCATAT
CACACCTGCAATAGTGAGAATATACAGACATAGGAGAGATTGCGTATGGT
TTAGTCATGAAGAATTTATAACTGTATTTTCATCTTCAGTTGATCATTTT
TCTTGTTTCTTTCTCTGAAGGAACGGAGGTCCGATGTCCAGTGGGATACC
AGTCACCTAACTTAGATTTCACTCCTGACTGCGAAGGTATGTTGAACCTA
GAGTGTCTAAAGTTATTACAGATACGATAAAAGATGCCTTATTTGCGAAT
GTCGACATTCCGAAGTGCGCCGCCATTTTGGTATTCTGACACCTTCTGAT
GACCAAATACGTAAACTAGTCACTAGTATGCAAACTTCTCATATGTTCCG
CCGCCTTTCTTGGCTGCATTCTAATATCATTATCTTCAGTTCCTATCTAA
TGGATATTAGGCCACACCATCTTAATTCTATGGATGACGTCCCTTACCTT
GAATCTTAATTGCCAGGTATCCGATCAAGCGCACAGTCTGTCAAGGTCGC
TCTGAAGAGTTTGTTGGTCTAGATCAGTATGTATGGGACGGTGTACCGGG
CAATCATTTTCAAAGAGACGTAGCTGAGATGATATGCCTTTGTCAATATC
ATTAATGTACAGTAAAGATAGGAGGGATGTCCCTTGTGGCACTCCTGATT
TGACCATGGTAGGTTTCGATATTTCCACATCAACCATTACCTGTTGTTGT
CTATCGAGAAGCCAGTTTGCAATCCATCTCATGTTTGTACCAAGCTTATT
CCATTGAAATCTAATTTGTTAAGTATTGGCATGTGTGGTACGCTAAAACA
GGTTTTGAAAATCTAATATGACTAATTCTATCTGGCATCCTTGATCAAAC
CATGATGTGATATTGTTATGTGCAGATTGACTAAGACTCACAACAGTGAT
TCGCCCGAACTCCATGTTGGGCGGGTAGGAGAATATTGGGCATATCTAGA
TGTTTCATTATTGCCAAGTACATTGGTGTGGTCATAGATCAAAACAAAAC
GCGAACTTGTTCGCACTTGCTTGTAAAAATGGGCCATAATGGGTGCATGA
ATTCCAGACAAAGGTTATGCTTCATGTTATGTTTTGTGTTGTTTTTTGGT
AAATTATTTGATTGTGTTTTTCTATATATGTTTGACCTAGATGACCCGAG
AAGTACGTGATTTATATTGTTATGAAATTGAACTATTGTGTCTTGAATCT
ATTGAATAGATAATCTAAATTGGGGCTTGATAATCCTTTCCTTGACAGCA
CGAAGAAACTCAGATCATTGTATATCATGTTAATATTTCAATACTTCAAC
TATTGAAATAAGAACATGTTTTCATAGTCCTTATTCTCTGTGTTTGATAA
TGGAGATCTGATATATGACACATATGATCGAACTATTTATTCCCTTAGTT
ACATAGTTGTTAGGATAAGTGGTAATGCATCAGAGGTCGAGGGTTGAAAT
TGATATTTATGACCGTGATAAAGATGACCATCATTGCATATAGATGGCGG
AAGGTCAGTTACATTTTGTGTACTAGCTAAGAGTAGATTATGATTGCATG
TATTTTTTAACGAAGAGCCATGTGATAATCAACGAGACATGCTATAATTA
CAATAAATGAGGGATTTTCTATTTTCTATATACGCAAGTTAAATCGAAGA
TAAAGTCACAAGATATATTTTAAAGGGATTGTAGTGTTTAGGTAATGTGT
GGTGCCTGGATATTTTATCCTGCCAGAAATTCTAAACATGTATGACTTCC
TGTGACTTGAACATAACGTGTTGTTCTCGCATTCATTGACAATCATAGCG
TACGTCTGTACAATTCCTATTTTGTATTTGATTTGAATGACCTTAATATC
TCCCCTTCTGTATAACCAGTGGATGTACTAGTGTAGGTTATTGAAAATGT
ATAGTGTACTTCGCAGTCGATATTCGTTTATCCTTAAGTGAATTGTACAA
ATAGCTCATCGTTTGCACTAGTTTTAAGTCGATTTGACTTAAAGTCTGTT
CATCTGTGCTCTTTACTTTATTTACCATTCGTATCATGTGCTCAGTTATT
TCTCACTAGTCTAGAGAAAAAATAGGAAAGACAATACGAAGAATCTGTAC
CGTTTTGCGACTTGCTACACAGTTCGCAACCATTGCATCCGTGCACTAAT
GTTCCCCATGTCTAACCCTTGCAGACATCGACGAATGTGCCACCGGTACG
AGTGGTTGTAGCCAACTTTGTGAAAACACAGAGGGAAGTTACTACTGTAG
ATGTCATGATGGCTATCAGTTGGGCCCAGACAACCACACTTGTACAGGTT
AGGTCATATTTCACAGATAACAGATCGATTGACCGGTCACCGGCTCCATC
TTGTTGCAACAACGTACGCTGTTGAACATATTATGTGCTGTCTATTTGAA
GTTGAGAATTCCGCAAACAAAATCGATTTCATTGTTCTAAAACTTAAACA
TGGTTGTGGAAAAAGGAGGTTAGCATATCTGTGCTAAATGCATCATGCGT
ACATTATAAAACAGTGTTGGCAAACATCACAGAGGGGACATAATTTGGAA
AGAGCTTTCTCCAAAGCACACACGACCCTGCCCGATACACAGCTACTTGC
TTGGTAACAAAGGAATGTTTACGAACAAGTCTGCTCACTGCTGACAGCCA
CAGAGATTAACGAGGGTTAACATATCAACAGGCCTAAATCAATTTGCAAT
CGATCAATCAATGACATAAAATGCGTTGTGGCTTCAACATCATGGGAAAA
GTATGTTTACAACATGTTTCATCAAAGATTTTGAAACAGCTTTACATGAA
ACAGATTGAAACATGTCGAGCCCTCATCATCAGAAGGCTTGTACTTGACA
TAAATAAATTGGAAGGATATCACTGTTTCTGAAAATCATATCCCAAAAGA
GTCTAGTCGGTAACACTTTTTAGATTGAATATATTTGCATATCGTTTATG
AGGAAGGTTGAAAATGTTCGTTGCTTGCAAATGTAATATTACATGTCTTA
TATTTTGGAAAAATCGTACTCAGAGCCGACACCAACACCTCCAAGTCCAG
ATCCGTGCGACTCGCAGCAGCATACAGTACTGAGCGAACCCCTCCGAAGT
GTTGGTAATGTCTACCAGGCCAACCAAGCTCCGATTTGTGACCGTAATCT
TGTCTACGGCTGGTACAGATTCGACAGTCCTGCAGGTACGCATGTGATAT
GAATATTACATATTTATAATGCATGAAACACACTCACTCACACACGCACA
GAAACAAACACAAACACAAAAATAAACACACGCACACATAGCATACGTGG
GGAATTATGTAATATTGCCTTAGTATCAACATCTGTATCAATTATTTTTC
ATATCCATCAGTTTCCATACCAACACAATTAAAAACAAAAACGGCAACTT
GTTTAACATATTGAATGTTCTCCTACCCAGGAAATGACATCCCCCTGACA
TGTCCCCCTGCCAACCGATGCGGCACACACACCACAGTCTGGCTGAACCT
GACCTCCAGCCCTTCAGCTAACGACGGAGTGGTCTTAACGAACGGCTGCG
CCCATTTTGTTGCACCCGGTGTGACTGACGACTGCTGTGCCTGGAGAACT
AACGTGGCCGTCAAAAACTGCAGTGACTACCTGGTGTACGCACTG Coding sequence (CDS) from alignment at Sc0000029:2066307..2072101+ >transcript:BL96829_cuf0 ID=transcript:BL96829_cuf0|Name=transcript:BL96829_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1668bp|location=Sequence derived from alignment at Sc0000029:2066307..2072101+ (Branchiostoma lanceolatum)
ATGGCTGTTCTTTTTTACCTGGTGGCTGCGCTGTTTGCTGCAAAAGAAGC
TACAACTCAAAGTCCAGATCCGTGCGACTCGCAGCAGCATACAGTACTGA
ACGAACCCCTCCGAAGTGTTGGTCACATCTACCAGGCCAACCAAGCTCCG
ATTTGTGACCGTAATCTTGTCTACGGCTGGTACAGATTCGACAGTCCTGC
AGGCAATGAGATCCCCCTGACATGTCCCCCTGCCAACCGATGCGGCACAC
ACACCACAGTCTGGCTGAACCTGACCTCCAGCCCTTCAGCTAACGACGGA
GTGGTCTTAACGAACGGCTGCGCCCATTTTGTTGCACCCGGTGTGACTGA
CGACTGCTGTGCCTGGAGAACTAACGTGGCCGTCAAAAACTGCAGTGACT
ACCTGGTGTACGCACTGATGGCTGTTCTTTTTTACCTGGTGGCTGCGCTG
TTTGCTGCAAAAGAAGCTACAACTCAAAGTCCAGATCCGTGCGACTCGCA
GCAGCATACAGTACTGAACGAACCCCTCCGAAGTGTTGGTCACATCTACC
AGGCCAACCAAGCTCCGATTTGTGACCGTAATCTTGTCTACGGCTGGTAC
AGATTCGACAGTCCTGCAGGCAATGAGATCCCCCTGACATGTCCCCCTGC
CAACCGATGCGGCACACACACCACAGTCTGGCTGAACCTGACCTCCAGCC
CTTCAGCTAACGACGGAGTGGTCTTAACGAACGGCTGCGCCCATTTTGTT
GCACCCGGTGTGACTGACGACTGCTGTGCCTGGAGAACTAACGTGGCCGT
CAAAAACTGCAGTGACTACCTGGTGTACGCACTGATGGCTGTTCTTTTTT
ACCTGGTGGCTGCGCTGTTTGCTGCAAAAGAAGCTACAACTCAAAGTCCA
GATCCGTGCGACTCGCAGCAGCATACAGTACTGAACGAACCCCTCCGAAG
TGTTGGTCACATCTACCAGGCCAACCAAGCTCCGATTTGTGACCGTAATC
TTGTCTACGGCTGGTACAGATTCGACAGTCCTGCAGGCAATGAGATCCCC
CTGACATGTCCCCCTGCCAACCGATGCGGCACACACACCACAGTCTGGCT
GAACCTGACCTCCAGCCCTTCAGCTAACGACGGAGTGGTCTTAACGAACG
GCTGCGCCCATTTTGTTGCACCCGGTGTGACTGACGACTGCTGTGCCTGG
AGAACTAACGTGGCCGTCAAAAACTGCAGTGACTACCTGGTGTACGCACT
GATGGCTGTTCTTTTTTACCTGGTGGCTGCGCTGTTTGCTGCAAAAGAAG
CTACAACTCAAAGTCCAGATCCGTGCGACTCGCAGCAGCATACAGTACTG
AACGAACCCCTCCGAAGTGTTGGTCACATCTACCAGGCCAACCAAGCTCC
GATTTGTGACCGTAATCTTGTCTACGGCTGGTACAGATTCGACAGTCCTG
CAGGCAATGAGATCCCCCTGACATGTCCCCCTGCCAACCGATGCGGCACA
CACACCACAGTCTGGCTGAACCTGACCTCCAGCCCTTCAGCTAACGACGG
AGTGGTCTTAACGAACGGCTGCGCCCATTTTGTTGCACCCGGTGTGACTG
ACGACTGCTGTGCCTGGAGAACTAACGTGGCCGTCAAAAACTGCAGTGAC
TACCTGGTGTACGCACTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000029 | genome | Sc0000029:2066307..2072101 + |
Properties
| Property Name | Value |
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| Transcript id | BL96829_cuf0 |
| Biotype | protein_coding |
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